Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:09:27 (2983320): wrapper (7.7.26015): starting
03:09:27 (2983320): wrapper: running run_atlas (--nthreads 3)
[2026-01-14 03:09:27] Arguments: --nthreads 3
[2026-01-14 03:09:27] Threads: 3
[2026-01-14 03:09:27] Checking for CVMFS
[2026-01-14 03:09:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 03:09:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 03:09:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 03:09:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 03:09:27] 2.9.2.0 2866369 328 64436 155113 3 188 23577736 36864001 0 130560 0 312433 99.987 16598 21036 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 03:09:27] CVMFS is ok
[2026-01-14 03:09:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 03:09:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 03:09:27] Further information can be found at the LHC@home message board.
[2026-01-14 03:09:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 03:09:27] Checking for apptainer binary...
[2026-01-14 03:09:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 03:09:27] Running /usr/bin/apptainer --version
[2026-01-14 03:09:27] apptainer version 1.4.1-1.1
[2026-01-14 03:09:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 03:09:27] magicA161a
[2026-01-14 03:09:27] apptainer works
[2026-01-14 03:09:36] Set ATHENA_PROC_NUMBER=3
[2026-01-14 03:09:36] Set ATHENA_CORE_NUMBER=3
[2026-01-14 03:09:36] Starting ATLAS job with PandaID=6969266430
[2026-01-14 03:09:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 04:01:52]  *** The last 200 lines of the pilot log: ***
[2026-01-14 04:01:52] 2026-01-14 03:01:14,887 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | job 6969266430 has completed (purged errors)
[2026-01-14 04:01:52] 2026-01-14 03:01:14,888 | INFO     | overall cleanup function is called
[2026-01-14 04:01:52] 2026-01-14 03:01:15,894 | INFO     | --- collectZombieJob: --- 10, [2993479]
[2026-01-14 04:01:52] 2026-01-14 03:01:15,895 | INFO     | zombie collector waiting for pid 2993479
[2026-01-14 04:01:52] 2026-01-14 03:01:15,895 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 04:01:52] 2026-01-14 03:01:15,895 | INFO     | collected zombie processes
[2026-01-14 04:01:52] 2026-01-14 03:01:15,895 | INFO     | will attempt to kill all subprocesses of pid=2993479
[2026-01-14 04:01:52] 2026-01-14 03:01:15,938 | INFO     | process IDs to be killed: [2993479] (in reverse order)
[2026-01-14 04:01:52] 2026-01-14 03:01:15,962 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 04:01:52] 2026-01-14 03:01:15,962 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 04:01:52] 2026-01-14 03:01:15,963 | INFO     | did not find any defunct processes belonging to 2993479
[2026-01-14 04:01:52] 2026-01-14 03:01:15,964 | INFO     | did not find any defunct processes belonging to 2993479
[2026-01-14 04:01:52] 2026-01-14 03:01:15,964 | INFO     | ready for new job
[2026-01-14 04:01:52] 2026-01-14 03:01:15,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 04:01:52] 2026-01-14 03:01:15,965 | INFO     | ***************************************
[2026-01-14 04:01:52] 2026-01-14 03:01:15,965 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 04:01:52] 2026-01-14 03:01:15,965 | INFO     | ***************************************
[2026-01-14 04:01:52] 2026-01-14 03:01:15,965 | INFO     | 
[2026-01-14 04:01:52] 2026-01-14 03:01:15,966 | INFO     | architecture information:
[2026-01-14 04:01:52] 2026-01-14 03:01:15,966 | INFO     | executing command: cat /etc/os-release
[2026-01-14 04:01:52] 2026-01-14 03:01:15,974 | INFO     | cat /etc/os-release:
[2026-01-14 04:01:52] NAME="CentOS Linux"
[2026-01-14 04:01:52] VERSION="7 (Core)"
[2026-01-14 04:01:52] ID="centos"
[2026-01-14 04:01:52] ID_LIKE="rhel fedora"
[2026-01-14 04:01:52] VERSION_ID="7"
[2026-01-14 04:01:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 04:01:52] ANSI_COLOR="0;31"
[2026-01-14 04:01:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 04:01:52] HOME_URL="https://www.centos.org/"
[2026-01-14 04:01:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 04:01:52] 
[2026-01-14 04:01:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 04:01:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 04:01:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 04:01:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 04:01:52] 
[2026-01-14 04:01:52] 2026-01-14 03:01:15,974 | INFO     | ***************************************
[2026-01-14 04:01:52] 2026-01-14 03:01:16,478 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | INFO     | sufficient remaining disk space (381092364288 B)
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | INFO     | update_server=False
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 04:01:52] 2026-01-14 03:01:16,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:01:52] 2026-01-14 03:01:16,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:01:52] 2026-01-14 03:01:16,576 | INFO     | aborting loop
[2026-01-14 04:01:52] 2026-01-14 03:01:17,362 | INFO     | all data control threads have been joined
[2026-01-14 04:01:52] 2026-01-14 03:01:17,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 04:01:52] 2026-01-14 03:01:17,492 | INFO     | all payload control threads have been joined
[2026-01-14 04:01:52] 2026-01-14 03:01:17,492 | INFO     | [job] queue monitor thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:17,494 | INFO     | [job] retrieve thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:17,582 | INFO     | [job] job monitor thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:17,873 | INFO     | all job control threads have been joined
[2026-01-14 04:01:52] 2026-01-14 03:01:18,106 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,265 | INFO     | [data] copytool_in thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,368 | INFO     | [data] control thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,371 | INFO     | [payload] validate_post thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,445 | INFO     | [payload] failed_post thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,498 | INFO     | [payload] control thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,766 | INFO     | [job] validate thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,872 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,879 | INFO     | [job] control thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,895 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:18,941 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:19,467 | INFO     | [data] copytool_out thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:19,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 04:01:52] 2026-01-14 03:01:23,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 04:01:52] 2026-01-14 03:01:46,186 | INFO     | [monitor] cgroup control has ended
[2026-01-14 04:01:52] 2026-01-14 03:01:46,833 | INFO     | PID=2987038 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 04:01:52] 2026-01-14 03:01:46,833 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 04:01:52] 2026-01-14 03:01:46,833 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 04:01:52] 2026-01-14 03:01:46,833 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 04:01:52] 2026-01-14 03:01:47,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282147813184)>', '<ExcThread(monitor, started 140281651377920)>']
[2026-01-14 04:01:52] 2026-01-14 03:01:47,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 04:01:52] 2026-01-14 03:01:47,839 | INFO     | [monitor] control thread has ended
[2026-01-14 04:01:52] 2026-01-14 03:01:52,222 | INFO     | all workflow threads have been joined
[2026-01-14 04:01:52] 2026-01-14 03:01:52,222 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 04:01:52] 2026-01-14 03:01:52,222 | INFO     | traces error code: 0
[2026-01-14 04:01:52] 2026-01-14 03:01:52,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 04:01:52] 2026-01-14 03:01:52,272 [wrapper] ==== pilot stdout END ====
[2026-01-14 04:01:52] 2026-01-14 03:01:52,274 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 04:01:52] 2026-01-14 03:01:52,277 [wrapper] pilotpid: 2987038
[2026-01-14 04:01:52] 2026-01-14 03:01:52,279 [wrapper] Pilot exit status: 0
[2026-01-14 04:01:52] 2026-01-14 03:01:52,287 [wrapper] pandaids: 6969266430
[2026-01-14 04:01:52] 2026-01-14 03:01:52,303 [wrapper] cleanup supervisor_pilot 3002750 2987039
[2026-01-14 04:01:52] 2026-01-14 03:01:52,305 [wrapper] Test setup, not cleaning
[2026-01-14 04:01:52] 2026-01-14 03:01:52,307 [wrapper] apfmon messages muted
[2026-01-14 04:01:52] 2026-01-14 03:01:52,310 [wrapper] ==== wrapper stdout END ====
[2026-01-14 04:01:52] 2026-01-14 03:01:52,312 [wrapper] ==== wrapper stderr END ====
[2026-01-14 04:01:52]  *** Error codes and diagnostics ***
[2026-01-14 04:01:52]     "exeErrorCode": 0,
[2026-01-14 04:01:52]     "exeErrorDiag": "",
[2026-01-14 04:01:52]     "pilotErrorCode": 0,
[2026-01-14 04:01:52]     "pilotErrorDiag": "",
[2026-01-14 04:01:52]  *** Listing of results directory ***
[2026-01-14 04:01:52] total 728284
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 04:01:52] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:07 queuedata.json
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc       100 Jan 14 03:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 04:01:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 03:09 run_atlas
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc       105 Jan 14 03:09 job.xml
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc 595769355 Jan 14 03:09 EVNT.32794306._000206.pool.root.1
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc    592390 Jan 14 03:09 input.tar.gz
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc     15847 Jan 14 03:09 start_atlas.sh
[2026-01-14 04:01:52] drwxrwx--x 2 boinc boinc      4096 Jan 14 03:09 shared
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc         0 Jan 14 03:09 boinc_setup_complete
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc      6448 Jan 14 03:09 init_data.xml
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc         0 Jan 14 03:09 boinc_lockfile
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc      2505 Jan 14 03:09 pandaJob.out
[2026-01-14 04:01:52] -rw------- 1 boinc boinc    997226 Jan 14 03:09 agis_schedconf.cvmfs.json
[2026-01-14 04:01:52] -rw------- 1 boinc boinc   1516246 Jan 14 03:09 agis_ddmendpoints.agis.ALL.json
[2026-01-14 04:01:52] drwx------ 5 boinc boinc      4096 Jan 14 03:09 pilot3
[2026-01-14 04:01:52] -rw------- 1 boinc boinc 144684790 Jan 14 04:00 HITS.48215263._005136.pool.root.1
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc       529 Jan 14 04:00 boinc_task_state.xml
[2026-01-14 04:01:52] -rw------- 1 boinc boinc        95 Jan 14 04:00 pilot_heartbeat.json
[2026-01-14 04:01:52] -rw------- 1 boinc boinc      1018 Jan 14 04:00 memory_monitor_summary.json
[2026-01-14 04:01:52] -rw------- 1 boinc boinc    225435 Jan 14 04:01 log.48215263._005136.job.log.tgz.1
[2026-01-14 04:01:52] -rw------- 1 boinc boinc      7743 Jan 14 04:01 heartbeat.json
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc        26 Jan 14 04:01 wrapper_checkpoint.txt
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc      8192 Jan 14 04:01 boinc_mmap_file
[2026-01-14 04:01:52] -rw------- 1 boinc boinc      4752 Jan 14 04:01 pilotlog.txt
[2026-01-14 04:01:52] -rw------- 1 boinc boinc    474232 Jan 14 04:01 log.48215263._005136.job.log.1
[2026-01-14 04:01:52] -rw------- 1 boinc boinc       357 Jan 14 04:01 output.list
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc       620 Jan 14 04:01 runtime_log
[2026-01-14 04:01:52] -rw------- 1 boinc boinc    716800 Jan 14 04:01 result.tar.gz
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc      8917 Jan 14 04:01 runtime_log.err
[2026-01-14 04:01:52] -rw------- 1 boinc boinc       660 Jan 14 04:01 c1GNDmca1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfdiKDmeU8EXn.diag
[2026-01-14 04:01:52] -rw-r--r-- 1 boinc boinc     11832 Jan 14 04:01 stderr.txt
[2026-01-14 04:01:52] HITS file was successfully produced:
[2026-01-14 04:01:52] -rw------- 1 boinc boinc 144684790 Jan 14 04:00 shared/HITS.pool.root.1
[2026-01-14 04:01:52]  *** Contents of shared directory: ***
[2026-01-14 04:01:52] total 724408
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc 595769355 Jan 14 03:09 ATLAS.root_0
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc    592390 Jan 14 03:09 input.tar.gz
[2026-01-14 04:01:52] -rw-r--r-- 2 boinc boinc     15847 Jan 14 03:09 start_atlas.sh
[2026-01-14 04:01:52] -rw------- 1 boinc boinc 144684790 Jan 14 04:00 HITS.pool.root.1
[2026-01-14 04:01:52] -rw------- 1 boinc boinc    716800 Jan 14 04:01 result.tar.gz
04:01:54 (2983320): run_atlas exited; CPU time 8629.419762
04:01:54 (2983320): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN