Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:56:49 (13343): wrapper (7.7.26015): starting
01:56:49 (13343): wrapper: running run_atlas (--nthreads 2)
[2026-01-14 01:56:49] Arguments: --nthreads 2
[2026-01-14 01:56:49] Threads: 2
[2026-01-14 01:56:49] Checking for CVMFS
[2026-01-14 01:56:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 01:56:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 01:56:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 01:56:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 01:56:50] 2.9.2.0 4158477 160 51072 155112 3 57 27186810 36864001 0 130560 0 131706 99.984 8315 22718 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 01:56:50] CVMFS is ok
[2026-01-14 01:56:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 01:56:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 01:56:50] Further information can be found at the LHC@home message board.
[2026-01-14 01:56:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 01:56:50] Checking for apptainer binary...
[2026-01-14 01:56:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 01:56:50] Running /usr/bin/apptainer --version
[2026-01-14 01:56:50] apptainer version 1.4.1-1.1
[2026-01-14 01:56:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 01:56:50] magicA244
[2026-01-14 01:56:50] apptainer works
[2026-01-14 01:56:50] Set ATHENA_PROC_NUMBER=2
[2026-01-14 01:56:50] Set ATHENA_CORE_NUMBER=2
[2026-01-14 01:56:50] Starting ATLAS job with PandaID=6969265834
[2026-01-14 01:56:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 03:17:16]  *** The last 200 lines of the pilot log: ***
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | job 6969265834 has completed (purged errors)
[2026-01-14 03:17:16] 2026-01-14 02:16:40,791 | INFO     | overall cleanup function is called
[2026-01-14 03:17:16] 2026-01-14 02:16:41,798 | INFO     | --- collectZombieJob: --- 10, [23471]
[2026-01-14 03:17:16] 2026-01-14 02:16:41,798 | INFO     | zombie collector waiting for pid 23471
[2026-01-14 03:17:16] 2026-01-14 02:16:41,798 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 03:17:16] 2026-01-14 02:16:41,798 | INFO     | collected zombie processes
[2026-01-14 03:17:16] 2026-01-14 02:16:41,798 | INFO     | will attempt to kill all subprocesses of pid=23471
[2026-01-14 03:17:16] 2026-01-14 02:16:41,835 | INFO     | process IDs to be killed: [23471] (in reverse order)
[2026-01-14 03:17:16] 2026-01-14 02:16:41,855 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 03:17:16] 2026-01-14 02:16:41,856 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 03:17:16] 2026-01-14 02:16:41,856 | INFO     | did not find any defunct processes belonging to 23471
[2026-01-14 03:17:16] 2026-01-14 02:16:41,857 | INFO     | did not find any defunct processes belonging to 23471
[2026-01-14 03:17:16] 2026-01-14 02:16:41,857 | INFO     | ready for new job
[2026-01-14 03:17:16] 2026-01-14 02:16:41,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | ***************************************
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | ***************************************
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | 
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | architecture information:
[2026-01-14 03:17:16] 2026-01-14 02:16:41,858 | INFO     | executing command: cat /etc/os-release
[2026-01-14 03:17:16] 2026-01-14 02:16:41,866 | INFO     | cat /etc/os-release:
[2026-01-14 03:17:16] NAME="CentOS Linux"
[2026-01-14 03:17:16] VERSION="7 (Core)"
[2026-01-14 03:17:16] ID="centos"
[2026-01-14 03:17:16] ID_LIKE="rhel fedora"
[2026-01-14 03:17:16] VERSION_ID="7"
[2026-01-14 03:17:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 03:17:16] ANSI_COLOR="0;31"
[2026-01-14 03:17:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 03:17:16] HOME_URL="https://www.centos.org/"
[2026-01-14 03:17:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 03:17:16] 
[2026-01-14 03:17:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 03:17:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 03:17:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 03:17:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 03:17:16] 
[2026-01-14 03:17:16] 2026-01-14 02:16:41,866 | INFO     | ***************************************
[2026-01-14 03:17:16] 2026-01-14 02:16:42,370 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 03:17:16] 2026-01-14 02:16:42,399 | INFO     | sufficient remaining disk space (496656973824 B)
[2026-01-14 03:17:16] 2026-01-14 02:16:42,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 03:17:16] 2026-01-14 02:16:42,400 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 03:17:16] 2026-01-14 02:16:42,400 | INFO     | update_server=False
[2026-01-14 03:17:16] 2026-01-14 02:16:42,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 03:17:16] 2026-01-14 02:16:42,401 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:17:16] 2026-01-14 02:16:42,576 | INFO     | all payload control threads have been joined
[2026-01-14 03:17:16] 2026-01-14 02:16:42,576 | INFO     | all job control threads have been joined
[2026-01-14 03:17:16] 2026-01-14 02:16:42,643 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 03:17:16] 2026-01-14 02:16:42,644 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 03:17:16] 2026-01-14 02:16:42,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 03:17:16] 2026-01-14 02:16:42,644 | INFO     | will abort loop
[2026-01-14 03:17:16] 2026-01-14 02:16:43,301 | INFO     | all data control threads have been joined
[2026-01-14 03:17:16] 2026-01-14 02:16:43,407 | INFO     | [job] retrieve thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:43,407 | INFO     | [job] queue monitor thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:43,491 | INFO     | [payload] failed_post thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:43,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 03:17:16] 2026-01-14 02:16:43,582 | INFO     | [job] control thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:43,582 | INFO     | [payload] control thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:43,650 | INFO     | [job] job monitor thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,034 | INFO     | [payload] validate_post thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,164 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,307 | INFO     | [data] control thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,357 | INFO     | [data] copytool_in thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,692 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,693 | INFO     | [job] validate thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:44,817 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:45,518 | INFO     | [data] copytool_out thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:45,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 03:17:16] 2026-01-14 02:16:49,538 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:16:53,091 | INFO     | job.realtimelogging is not enabled
[2026-01-14 03:17:16] 2026-01-14 02:16:54,097 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 03:17:16] 2026-01-14 02:17:10,019 | INFO     | [monitor] cgroup control has ended
[2026-01-14 03:17:16] 2026-01-14 02:17:11,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694179219264)>', '<ExcThread(monitor, started 139693316359936)>']
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | INFO     | PID=17049 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 03:17:16] 2026-01-14 02:17:13,243 | INFO     | [monitor] control thread has ended
[2026-01-14 03:17:16] 2026-01-14 02:17:16,180 | INFO     | all workflow threads have been joined
[2026-01-14 03:17:16] 2026-01-14 02:17:16,181 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 03:17:16] 2026-01-14 02:17:16,181 | INFO     | traces error code: 0
[2026-01-14 03:17:16] 2026-01-14 02:17:16,181 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 03:17:16] 2026-01-14 02:17:16,227 [wrapper] ==== pilot stdout END ====
[2026-01-14 03:17:16] 2026-01-14 02:17:16,230 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 03:17:16] 2026-01-14 02:17:16,232 [wrapper] pilotpid: 17049
[2026-01-14 03:17:16] 2026-01-14 02:17:16,234 [wrapper] Pilot exit status: 0
[2026-01-14 03:17:16] 2026-01-14 02:17:16,240 [wrapper] pandaids: 6969265834
[2026-01-14 03:17:16] 2026-01-14 02:17:16,252 [wrapper] cleanup supervisor_pilot   35039 17050
[2026-01-14 03:17:16] 2026-01-14 02:17:16,254 [wrapper] Test setup, not cleaning
[2026-01-14 03:17:16] 2026-01-14 02:17:16,257 [wrapper] apfmon messages muted
[2026-01-14 03:17:16] 2026-01-14 02:17:16,259 [wrapper] ==== wrapper stdout END ====
[2026-01-14 03:17:16] 2026-01-14 02:17:16,261 [wrapper] ==== wrapper stderr END ====
[2026-01-14 03:17:16]  *** Error codes and diagnostics ***
[2026-01-14 03:17:16]     "exeErrorCode": 0,
[2026-01-14 03:17:16]     "exeErrorDiag": "",
[2026-01-14 03:17:16]     "pilotErrorCode": 0,
[2026-01-14 03:17:16]     "pilotErrorDiag": "",
[2026-01-14 03:17:16]  *** Listing of results directory ***
[2026-01-14 03:17:16] total 729792
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 03:17:16] -rwx------ 1 boinc boinc     36322 Jan 13 22:58 runpilot2-wrapper.sh
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:07 queuedata.json
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc       100 Jan 14 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 03:17:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 01:56 run_atlas
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc       105 Jan 14 01:56 job.xml
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc 593581615 Jan 14 01:56 EVNT.32794306._000195.pool.root.1
[2026-01-14 03:17:16] drwxrwx--x 2 boinc boinc      4096 Jan 14 01:56 shared
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc    592395 Jan 14 01:56 input.tar.gz
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc     15847 Jan 14 01:56 start_atlas.sh
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc         0 Jan 14 01:56 boinc_setup_complete
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc      6209 Jan 14 01:56 init_data.xml
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc         0 Jan 14 01:56 boinc_lockfile
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc      2505 Jan 14 01:56 pandaJob.out
[2026-01-14 03:17:16] -rw------- 1 boinc boinc    997218 Jan 14 01:57 agis_schedconf.cvmfs.json
[2026-01-14 03:17:16] -rw------- 1 boinc boinc   1516246 Jan 14 01:57 agis_ddmendpoints.agis.ALL.json
[2026-01-14 03:17:16] drwx------ 5 boinc boinc      4096 Jan 14 01:57 pilot3
[2026-01-14 03:17:16] -rw------- 1 boinc boinc 147941069 Jan 14 03:16 HITS.48215263._004858.pool.root.1
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc       530 Jan 14 03:16 boinc_task_state.xml
[2026-01-14 03:17:16] -rw------- 1 boinc boinc      1021 Jan 14 03:16 memory_monitor_summary.json
[2026-01-14 03:17:16] -rw------- 1 boinc boinc        95 Jan 14 03:16 pilot_heartbeat.json
[2026-01-14 03:17:16] -rw------- 1 boinc boinc    230181 Jan 14 03:16 log.48215263._004858.job.log.tgz.1
[2026-01-14 03:17:16] -rw------- 1 boinc boinc      7741 Jan 14 03:16 heartbeat.json
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc      8192 Jan 14 03:17 boinc_mmap_file
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc        26 Jan 14 03:17 wrapper_checkpoint.txt
[2026-01-14 03:17:16] -rw------- 1 boinc boinc      5008 Jan 14 03:17 pilotlog.txt
[2026-01-14 03:17:16] -rw------- 1 boinc boinc    702859 Jan 14 03:17 log.48215263._004858.job.log.1
[2026-01-14 03:17:16] -rw------- 1 boinc boinc       357 Jan 14 03:17 output.list
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc       620 Jan 14 03:17 runtime_log
[2026-01-14 03:17:16] -rw------- 1 boinc boinc    952320 Jan 14 03:17 result.tar.gz
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc      8912 Jan 14 03:17 runtime_log.err
[2026-01-14 03:17:16] -rw------- 1 boinc boinc       659 Jan 14 03:17 WFWMDmQa1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtaiKDmo66r8m.diag
[2026-01-14 03:17:16] -rw-r--r-- 1 boinc boinc     12852 Jan 14 03:17 stderr.txt
[2026-01-14 03:17:16] HITS file was successfully produced:
[2026-01-14 03:17:16] -rw------- 1 boinc boinc 147941069 Jan 14 03:16 shared/HITS.pool.root.1
[2026-01-14 03:17:16]  *** Contents of shared directory: ***
[2026-01-14 03:17:16] total 725684
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc 593581615 Jan 14 01:56 ATLAS.root_0
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc    592395 Jan 14 01:56 input.tar.gz
[2026-01-14 03:17:16] -rw-r--r-- 2 boinc boinc     15847 Jan 14 01:56 start_atlas.sh
[2026-01-14 03:17:16] -rw------- 1 boinc boinc 147941069 Jan 14 03:16 HITS.pool.root.1
[2026-01-14 03:17:16] -rw------- 1 boinc boinc    952320 Jan 14 03:17 result.tar.gz
03:17:18 (13343): run_atlas exited; CPU time 9137.891092
03:17:18 (13343): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN