Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:55:02 (19381): wrapper (7.7.26015): starting
18:55:02 (19381): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 18:55:02] Arguments: --nthreads 8
[2026-01-13 18:55:02] Threads: 8
[2026-01-13 18:55:02] Checking for CVMFS
[2026-01-13 18:55:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 18:55:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 18:55:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 18:55:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 18:55:03] 2.11.2.0 2873 130206 89068 155111 2 57 15926766 20275201 1 130560 0 32442348 99.824 8040189 34406 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 18:55:03] CVMFS is ok
[2026-01-13 18:55:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 18:55:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 18:55:03] Further information can be found at the LHC@home message board.
[2026-01-13 18:55:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 18:55:03] Checking for apptainer binary...
[2026-01-13 18:55:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 18:55:03] Running /usr/bin/apptainer --version
[2026-01-13 18:55:03] apptainer version 1.3.2-1.el7
[2026-01-13 18:55:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 18:55:04] c-115-13.aglt2.org
[2026-01-13 18:55:04] apptainer works
[2026-01-13 18:55:04] Set ATHENA_PROC_NUMBER=8
[2026-01-13 18:55:04] Set ATHENA_CORE_NUMBER=8
[2026-01-13 18:55:04] Starting ATLAS job with PandaID=6969264798
[2026-01-13 18:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 20:10:41]  *** The last 200 lines of the pilot log: ***
[2026-01-13 20:10:41]  replicas=None
[2026-01-13 20:10:41]  scope=mc23_13p6TeV
[2026-01-13 20:10:41]  status=None
[2026-01-13 20:10:41]  status_code=0
[2026-01-13 20:10:41]  storage_token=
[2026-01-13 20:10:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969264798/log.48215263._004545.job.log.tgz.1
[2026-01-13 20:10:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/f6/log.48215263._004545.job.log.tgz.1
[2026-01-13 20:10:41]  workdir=None
[2026-01-13 20:10:41] ]
[2026-01-13 20:10:41] 2026-01-14 01:10:00,647 | INFO     | transferring file log.48215263._004545.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969264798/log.48215263._004545.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 20:10:41] 2026-01-14 01:10:00,647 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969264798/log.48215263._004545.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._004545.job
[2026-01-13 20:10:41] 2026-01-14 01:10:00,672 | INFO     | adding to output.list: log.48215263._004545.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6b/f6/log.48215263._004545.job.log.tg
[2026-01-13 20:10:41] 2026-01-14 01:10:00,673 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 20:10:41] 2026-01-14 01:10:00,673 | INFO     | summary of transferred files:
[2026-01-13 20:10:41] 2026-01-14 01:10:00,673 | INFO     |  -- lfn=log.48215263._004545.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 20:10:41] 2026-01-14 01:10:00,673 | INFO     | stage-out finished correctly
[2026-01-13 20:10:41] 2026-01-14 01:10:02,079 | INFO     | time since job start (4481s) is within the limit (349056.0s)
[2026-01-13 20:10:41] 2026-01-14 01:10:02,300 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 20:10:41] 2026-01-14 01:10:03,195 | INFO     | PID=23059 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 20:10:41] 2026-01-14 01:10:04,195 | INFO     | time since job start (4483s) is within the limit (349056.0s)
[2026-01-13 20:10:41] 2026-01-14 01:10:04,411 | INFO     | job 6969264798 has state=finished
[2026-01-13 20:10:41] 2026-01-14 01:10:04,411 | INFO     | preparing for final server update for job 6969264798 in state='finished'
[2026-01-13 20:10:41] 2026-01-14 01:10:04,412 | INFO     | this job has now completed (state=finished)
[2026-01-13 20:10:41] 2026-01-14 01:10:04,412 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 20:10:41] 2026-01-14 01:10:04,412 | INFO     | log transfer has been attempted: DONE
[2026-01-13 20:10:41] 2026-01-14 01:10:04,412 | INFO     | job 6969264798 has finished - writing final server update
[2026-01-13 20:10:41] 2026-01-14 01:10:04,413 | INFO     | total number of processed events: 400 (read)
[2026-01-13 20:10:41] 2026-01-14 01:10:04,414 | INFO     | executing command: lscpu
[2026-01-13 20:10:41] 2026-01-14 01:10:04,440 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 20:10:41] 2026-01-14 01:10:05,144 | WARNING  | process 30354 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 20:10:41] 2026-01-14 01:10:05,145 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969264798/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 20:10:41] 2026-01-14 01:10:05,234 | INFO     | number of running child processes to parent process 30354: 1
[2026-01-13 20:10:41] 2026-01-14 01:10:05,234 | INFO     | maximum number of monitored processes: 6
[2026-01-13 20:10:41] 2026-01-14 01:10:06,201 | INFO     | time since job start (4485s) is within the limit (349056.0s)
[2026-01-13 20:10:41] 2026-01-14 01:10:07,736 | INFO     | monitor loop #334: job 0:6969264798 is in state 'finished'
[2026-01-13 20:10:41] 2026-01-14 01:10:07,737 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 20:10:41] 2026-01-14 01:10:08,203 | INFO     | time since job start (4487s) is within the limit (349056.0s)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,724 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 20:10:41] 2026-01-14 01:10:09,727 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1812.25
[2026-01-13 20:10:41] 2026-01-14 01:10:09,729 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969264798/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,730 | INFO     | extracted standard info from prmon json
[2026-01-13 20:10:41] 2026-01-14 01:10:09,730 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 20:10:41] 2026-01-14 01:10:09,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 20:10:41] 2026-01-14 01:10:09,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 20:10:41] 2026-01-14 01:10:09,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 20:10:41] 2026-01-14 01:10:09,734 | INFO     | fitting pss+swap vs Time
[2026-01-13 20:10:41] 2026-01-14 01:10:09,734 | INFO     | sum of square deviations: 89127252.5
[2026-01-13 20:10:41] 2026-01-14 01:10:09,734 | INFO     | sum of deviations: -4057905653.5000005
[2026-01-13 20:10:41] 2026-01-14 01:10:09,734 | INFO     | mean x: 1768350839.5
[2026-01-13 20:10:41] 2026-01-14 01:10:09,734 | INFO     | mean y: 2592725.8333333335
[2026-01-13 20:10:41] 2026-01-14 01:10:09,735 | INFO     | intersect: 80514452653.05954
[2026-01-13 20:10:41] 2026-01-14 01:10:09,735 | INFO     | chi2: 0.07251092568455994
[2026-01-13 20:10:41] 2026-01-14 01:10:09,735 | INFO     | current memory leak: -45.53 B/s (using 66 data points, chi2=0.07)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,735 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,735 | INFO     | ..............................
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . Timing measurements:
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . get job = 0 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . initial setup = 2 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . payload setup = 8 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . stage-in = 0 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . payload execution = 4448 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . stage-out = 0 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,736 | INFO     | . log creation = 0 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,737 | INFO     | ..............................
[2026-01-13 20:10:41] 2026-01-14 01:10:09,823 | INFO     | 
[2026-01-13 20:10:41] 2026-01-14 01:10:09,823 | INFO     | job summary report
[2026-01-13 20:10:41] 2026-01-14 01:10:09,823 | INFO     | --------------------------------------------------
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | PanDA job id: 6969264798
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | task id: 48215263
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | errors: (none)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | pilot state: finished 
[2026-01-13 20:10:41] 2026-01-14 01:10:09,824 | INFO     | transexitcode: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | exeerrorcode: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | exeerrordiag: 
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | exitcode: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | exitmsg: OK
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | cpuconsumptiontime: 32250 s
[2026-01-13 20:10:41] 2026-01-14 01:10:09,825 | INFO     | nevents: 400
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | neventsw: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | pid: 30354
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | pgrp: 30354
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | corecount: 8
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | event service: False
[2026-01-13 20:10:41] 2026-01-14 01:10:09,826 | INFO     | sizes: {0: 2283945, 1: 2283973, 6: 2284235, 11: 2284263, 4460: 2310363, 4462: 2319361, 4463: 2319545, 4471: 2319739}
[2026-01-13 20:10:41] 2026-01-14 01:10:09,827 | INFO     | --------------------------------------------------
[2026-01-13 20:10:41] 2026-01-14 01:10:09,827 | INFO     | 
[2026-01-13 20:10:41] 2026-01-14 01:10:09,827 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 20:10:41] 2026-01-14 01:10:09,854 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,855 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,855 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,855 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,855 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,855 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,856 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,857 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 20:10:41] 2026-01-14 01:10:09,858 | INFO     | job 6969264798 has completed (purged errors)
[2026-01-13 20:10:41] 2026-01-14 01:10:09,858 | INFO     | overall cleanup function is called
[2026-01-13 20:10:41] 2026-01-14 01:10:10,863 | INFO     | --- collectZombieJob: --- 10, [30354]
[2026-01-13 20:10:41] 2026-01-14 01:10:10,863 | INFO     | zombie collector waiting for pid 30354
[2026-01-13 20:10:41] 2026-01-14 01:10:10,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 20:10:41] 2026-01-14 01:10:10,863 | INFO     | collected zombie processes
[2026-01-13 20:10:41] 2026-01-14 01:10:10,863 | INFO     | will attempt to kill all subprocesses of pid=30354
[2026-01-13 20:10:41] 2026-01-14 01:10:10,950 | INFO     | process IDs to be killed: [30354] (in reverse order)
[2026-01-13 20:10:41] 2026-01-14 01:10:11,007 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 20:10:41] 2026-01-14 01:10:11,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 20:10:41] 2026-01-14 01:10:11,013 | INFO     | did not find any defunct processes belonging to 30354
[2026-01-13 20:10:41] 2026-01-14 01:10:11,016 | INFO     | did not find any defunct processes belonging to 30354
[2026-01-13 20:10:41] 2026-01-14 01:10:11,016 | INFO     | ready for new job
[2026-01-13 20:10:41] 2026-01-14 01:10:11,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 20:10:41] 2026-01-14 01:10:11,018 | INFO     | ***************************************
[2026-01-13 20:10:41] 2026-01-14 01:10:11,018 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 20:10:41] 2026-01-14 01:10:11,018 | INFO     | ***************************************
[2026-01-13 20:10:41] 2026-01-14 01:10:11,018 | INFO     | 
[2026-01-13 20:10:41] 2026-01-14 01:10:11,019 | INFO     | architecture information:
[2026-01-13 20:10:41] 2026-01-14 01:10:11,019 | INFO     | executing command: cat /etc/os-release
[2026-01-13 20:10:41] 2026-01-14 01:10:11,038 | INFO     | cat /etc/os-release:
[2026-01-13 20:10:41] NAME="CentOS Linux"
[2026-01-13 20:10:41] VERSION="7 (Core)"
[2026-01-13 20:10:41] ID="centos"
[2026-01-13 20:10:41] ID_LIKE="rhel fedora"
[2026-01-13 20:10:41] VERSION_ID="7"
[2026-01-13 20:10:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 20:10:41] ANSI_COLOR="0;31"
[2026-01-13 20:10:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 20:10:41] HOME_URL="https://www.centos.org/"
[2026-01-13 20:10:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 20:10:41] 
[2026-01-13 20:10:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 20:10:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 20:10:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 20:10:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 20:10:41] 
[2026-01-13 20:10:41] 2026-01-14 01:10:11,038 | INFO     | ***************************************
[2026-01-13 20:10:41] 2026-01-14 01:10:11,540 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 20:10:41] 2026-01-14 01:10:11,560 | INFO     | sufficient remaining disk space (17848860672 B)
[2026-01-13 20:10:41] 2026-01-14 01:10:11,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 20:10:41] 2026-01-14 01:10:11,560 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 20:10:41] 2026-01-14 01:10:11,560 | INFO     | update_server=False
[2026-01-13 20:10:41] 2026-01-14 01:10:11,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 20:10:41] 2026-01-14 01:10:11,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 20:10:41] 2026-01-14 01:10:11,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 20:10:41] 2026-01-14 01:10:11,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 20:10:41] 2026-01-14 01:10:11,562 | INFO     | aborting loop
[2026-01-13 20:10:41] 2026-01-14 01:10:12,369 | INFO     | all job control threads have been joined
[2026-01-13 20:10:41] 2026-01-14 01:10:12,566 | INFO     | [job] retrieve thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:12,567 | INFO     | [job] queue monitor thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:12,568 | INFO     | [job] job monitor thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:12,637 | INFO     | all data control threads have been joined
[2026-01-13 20:10:41] 2026-01-14 01:10:12,795 | INFO     | [job] validate thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:12,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 20:10:41] 2026-01-14 01:10:12,938 | INFO     | all payload control threads have been joined
[2026-01-13 20:10:41] 2026-01-14 01:10:12,981 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,309 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,342 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,375 | INFO     | [job] control thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,565 | INFO     | [data] copytool_out thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,594 | INFO     | [payload] failed_post thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,642 | INFO     | [data] control thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,726 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,944 | INFO     | [payload] control thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:13,985 | INFO     | [payload] validate_post thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:14,063 | INFO     | [data] copytool_in thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:16,900 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 20:10:41] 2026-01-14 01:10:18,699 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-13 20:10:41] 2026-01-14 01:10:28,234 | INFO     | [monitor] cgroup control has ended
[2026-01-13 20:10:41] 2026-01-14 01:10:29,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139704661456704)>', '<ExcThread(monitor, started 139704003454720)>']
[2026-01-13 20:10:41] 2026-01-14 01:10:34,192 | INFO     | all workflow threads have been joined
[2026-01-13 20:10:41] 2026-01-14 01:10:34,192 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 20:10:41] 2026-01-14 01:10:34,193 | INFO     | traces error code: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:34,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 20:10:41] 2026-01-14 01:10:41,322 | INFO     | PID=23059 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 20:10:41] 2026-01-14 01:10:41,323 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 20:10:41] 2026-01-14 01:10:41,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 20:10:41] 2026-01-14 01:10:41,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 20:10:41] 2026-01-14 01:10:41,323 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 20:10:41] 2026-01-14 01:10:41,324 | CRITICAL | thread 'MainThread' is not alive
[2026-01-13 20:10:41] 2026-01-14 01:10:41,324 | INFO     | [monitor] control thread has ended
[2026-01-13 20:10:41] 2026-01-14 01:10:41,417 [wrapper] ==== pilot stdout END ====
[2026-01-13 20:10:41] 2026-01-14 01:10:41,421 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 20:10:41] 2026-01-14 01:10:41,426 [wrapper] pilotpid: 23059
[2026-01-13 20:10:41] 2026-01-14 01:10:41,430 [wrapper] Pilot exit status: 0
[2026-01-13 20:10:41] 2026-01-14 01:10:41,448 [wrapper] pandaids: 6969264798
[2026-01-13 20:10:41] 2026-01-14 01:10:41,493 [wrapper] cleanup supervisor_pilot  4879 23060
[2026-01-13 20:10:41] 2026-01-14 01:10:41,498 [wrapper] Test setup, not cleaning
[2026-01-13 20:10:41] 2026-01-14 01:10:41,502 [wrapper] apfmon messages muted
[2026-01-13 20:10:41] 2026-01-14 01:10:41,507 [wrapper] ==== wrapper stdout END ====
[2026-01-13 20:10:41] 2026-01-14 01:10:41,510 [wrapper] ==== wrapper stderr END ====
[2026-01-13 20:10:41]  *** Error codes and diagnostics ***
[2026-01-13 20:10:41]     "exeErrorCode": 0,
[2026-01-13 20:10:41]     "exeErrorDiag": "",
[2026-01-13 20:10:41]     "pilotErrorCode": 0,
[2026-01-13 20:10:41]     "pilotErrorDiag": "",
[2026-01-13 20:10:41]  *** Listing of results directory ***
[2026-01-13 20:10:41] total 739652
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 16:50 pilot3.tar.gz
[2026-01-13 20:10:41] -rwx------ 1 boincer umatlas     36322 Jan 13 16:58 runpilot2-wrapper.sh
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 17:04 queuedata.json
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas       100 Jan 13 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 20:10:41] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 18:54 run_atlas
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas       105 Jan 13 18:54 job.xml
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas 599272876 Jan 13 18:55 EVNT.32794306._000182.pool.root.1
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 18:55 start_atlas.sh
[2026-01-13 20:10:41] drwxrwx--x 2 boincer umatlas      4096 Jan 13 18:55 shared
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas    592398 Jan 13 18:55 input.tar.gz
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas         0 Jan 13 18:55 boinc_lockfile
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas      2505 Jan 13 18:55 pandaJob.out
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas        57 Jan 13 18:55 setup.sh.local
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas    997218 Jan 13 18:55 agis_schedconf.cvmfs.json
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas   1516246 Jan 13 18:55 agis_ddmendpoints.agis.ALL.json
[2026-01-13 20:10:41] drwx------ 5 boincer umatlas      4096 Jan 13 18:55 pilot3
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas      5909 Jan 13 20:04 init_data.xml
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas 152238310 Jan 13 20:09 HITS.48215263._004545.pool.root.1
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas       530 Jan 13 20:09 boinc_task_state.xml
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas      1044 Jan 13 20:09 memory_monitor_summary.json
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas    332273 Jan 13 20:10 log.48215263._004545.job.log.tgz.1
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas      7838 Jan 13 20:10 heartbeat.json
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas        27 Jan 13 20:10 wrapper_checkpoint.txt
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 20:10 boinc_mmap_file
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas        95 Jan 13 20:10 pilot_heartbeat.json
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas       815 Jan 13 20:10 pilotlog.txt
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas    651415 Jan 13 20:10 log.48215263._004545.job.log.1
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas       357 Jan 13 20:10 output.list
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas       620 Jan 13 20:10 runtime_log
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas   1003520 Jan 13 20:10 result.tar.gz
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas      9342 Jan 13 20:10 runtime_log.err
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas       658 Jan 13 20:10 3X9MDmEa1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKZiKDmkC7mDo.diag
[2026-01-13 20:10:41] -rw-r--r-- 1 boincer umatlas     21953 Jan 13 20:10 stderr.txt
[2026-01-13 20:10:41] HITS file was successfully produced:
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas 152238310 Jan 13 20:09 shared/HITS.pool.root.1
[2026-01-13 20:10:41]  *** Contents of shared directory: ***
[2026-01-13 20:10:41] total 735484
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas 599272876 Jan 13 18:55 ATLAS.root_0
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 18:55 start_atlas.sh
[2026-01-13 20:10:41] -rw-r--r-- 2 boincer umatlas    592398 Jan 13 18:55 input.tar.gz
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas 152238310 Jan 13 20:09 HITS.pool.root.1
[2026-01-13 20:10:41] -rw------- 1 boincer umatlas   1003520 Jan 13 20:10 result.tar.gz
20:10:42 (19381): run_atlas exited; CPU time 32224.818367
20:10:42 (19381): called boinc_finish(0)

</stderr_txt>
]]>

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