Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:22:29 (472244): wrapper (7.7.26015): starting
01:22:29 (472244): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 01:22:29] Arguments: --nthreads 4
[2026-01-14 01:22:29] Threads: 4
[2026-01-14 01:22:29] Checking for CVMFS
[2026-01-14 01:22:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 01:22:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 01:22:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 01:22:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 01:22:29] 2.9.2.0 426885 97 55956 155112 2 56 18690899 36864001 0 130560 0 120297 99.982 8306 26967 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 01:22:29] CVMFS is ok
[2026-01-14 01:22:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 01:22:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 01:22:29] Further information can be found at the LHC@home message board.
[2026-01-14 01:22:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 01:22:29] Checking for apptainer binary...
[2026-01-14 01:22:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 01:22:29] Running /usr/bin/apptainer --version
[2026-01-14 01:22:29] apptainer version 1.4.1-1.1
[2026-01-14 01:22:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 01:22:29] iaxoA393
[2026-01-14 01:22:29] apptainer works
[2026-01-14 01:22:29] Set ATHENA_PROC_NUMBER=4
[2026-01-14 01:22:29] Set ATHENA_CORE_NUMBER=4
[2026-01-14 01:22:29] Starting ATLAS job with PandaID=6969262488
[2026-01-14 01:22:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 02:09:46]  *** The last 200 lines of the pilot log: ***
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | job 6969262488 has completed (purged errors)
[2026-01-14 02:09:46] 2026-01-14 01:09:11,766 | INFO     | overall cleanup function is called
[2026-01-14 02:09:46] 2026-01-14 01:09:12,772 | INFO     | --- collectZombieJob: --- 10, [482597]
[2026-01-14 02:09:46] 2026-01-14 01:09:12,772 | INFO     | zombie collector waiting for pid 482597
[2026-01-14 02:09:46] 2026-01-14 01:09:12,772 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 02:09:46] 2026-01-14 01:09:12,772 | INFO     | collected zombie processes
[2026-01-14 02:09:46] 2026-01-14 01:09:12,772 | INFO     | will attempt to kill all subprocesses of pid=482597
[2026-01-14 02:09:46] 2026-01-14 01:09:12,816 | INFO     | process IDs to be killed: [482597] (in reverse order)
[2026-01-14 02:09:46] 2026-01-14 01:09:12,846 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 02:09:46] 2026-01-14 01:09:12,846 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 02:09:46] 2026-01-14 01:09:12,848 | INFO     | did not find any defunct processes belonging to 482597
[2026-01-14 02:09:46] 2026-01-14 01:09:12,850 | INFO     | did not find any defunct processes belonging to 482597
[2026-01-14 02:09:46] 2026-01-14 01:09:12,850 | INFO     | ready for new job
[2026-01-14 02:09:46] 2026-01-14 01:09:12,850 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 02:09:46] 2026-01-14 01:09:12,850 | INFO     | ***************************************
[2026-01-14 02:09:46] 2026-01-14 01:09:12,851 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 02:09:46] 2026-01-14 01:09:12,851 | INFO     | ***************************************
[2026-01-14 02:09:46] 2026-01-14 01:09:12,851 | INFO     | 
[2026-01-14 02:09:46] 2026-01-14 01:09:12,851 | INFO     | architecture information:
[2026-01-14 02:09:46] 2026-01-14 01:09:12,851 | INFO     | executing command: cat /etc/os-release
[2026-01-14 02:09:46] 2026-01-14 01:09:12,864 | INFO     | cat /etc/os-release:
[2026-01-14 02:09:46] NAME="CentOS Linux"
[2026-01-14 02:09:46] VERSION="7 (Core)"
[2026-01-14 02:09:46] ID="centos"
[2026-01-14 02:09:46] ID_LIKE="rhel fedora"
[2026-01-14 02:09:46] VERSION_ID="7"
[2026-01-14 02:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 02:09:46] ANSI_COLOR="0;31"
[2026-01-14 02:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 02:09:46] HOME_URL="https://www.centos.org/"
[2026-01-14 02:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 02:09:46] 
[2026-01-14 02:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 02:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 02:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 02:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 02:09:46] 
[2026-01-14 02:09:46] 2026-01-14 01:09:12,864 | INFO     | ***************************************
[2026-01-14 02:09:46] 2026-01-14 01:09:13,367 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 02:09:46] 2026-01-14 01:09:13,382 | INFO     | sufficient remaining disk space (341260107776 B)
[2026-01-14 02:09:46] 2026-01-14 01:09:13,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 02:09:46] 2026-01-14 01:09:13,382 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 02:09:46] 2026-01-14 01:09:13,382 | INFO     | update_server=False
[2026-01-14 02:09:46] 2026-01-14 01:09:13,382 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 02:09:46] 2026-01-14 01:09:13,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 02:09:46] 2026-01-14 01:09:13,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 02:09:46] 2026-01-14 01:09:13,383 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 02:09:46] 2026-01-14 01:09:13,383 | INFO     | aborting loop
[2026-01-14 02:09:46] 2026-01-14 01:09:13,409 | INFO     | all job control threads have been joined
[2026-01-14 02:09:46] 2026-01-14 01:09:13,712 | INFO     | all payload control threads have been joined
[2026-01-14 02:09:46] 2026-01-14 01:09:13,862 | INFO     | all data control threads have been joined
[2026-01-14 02:09:46] 2026-01-14 01:09:14,388 | INFO     | [job] retrieve thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,388 | INFO     | [job] queue monitor thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,388 | INFO     | [job] job monitor thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,415 | INFO     | [job] control thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,603 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,718 | INFO     | [payload] control thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 02:09:46] 2026-01-14 01:09:14,868 | INFO     | [data] control thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:14,885 | INFO     | [job] validate thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:15,018 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:15,074 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:15,338 | INFO     | [data] copytool_in thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:15,411 | INFO     | [payload] failed_post thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:15,942 | INFO     | [payload] validate_post thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:16,736 | INFO     | [data] copytool_out thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:17,390 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:23,868 | INFO     | job.realtimelogging is not enabled
[2026-01-14 02:09:46] 2026-01-14 01:09:24,871 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 02:09:46] 2026-01-14 01:09:40,583 | INFO     | [monitor] cgroup control has ended
[2026-01-14 02:09:46] 2026-01-14 01:09:41,761 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620999485248)>', '<ExcThread(monitor, started 140619762620160)>']
[2026-01-14 02:09:46] 2026-01-14 01:09:43,348 | INFO     | PID=476033 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 02:09:46] 2026-01-14 01:09:43,348 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 02:09:46] 2026-01-14 01:09:43,349 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 02:09:46] 2026-01-14 01:09:43,349 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 02:09:46] 2026-01-14 01:09:43,349 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 02:09:46] 2026-01-14 01:09:43,349 | INFO     | [monitor] control thread has ended
[2026-01-14 02:09:46] 2026-01-14 01:09:46,787 | INFO     | all workflow threads have been joined
[2026-01-14 02:09:46] 2026-01-14 01:09:46,787 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 02:09:46] 2026-01-14 01:09:46,787 | INFO     | traces error code: 0
[2026-01-14 02:09:46] 2026-01-14 01:09:46,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 02:09:46] 2026-01-14 01:09:46,850 [wrapper] ==== pilot stdout END ====
[2026-01-14 02:09:46] 2026-01-14 01:09:46,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 02:09:46] 2026-01-14 01:09:46,857 [wrapper] pilotpid: 476033
[2026-01-14 02:09:46] 2026-01-14 01:09:46,861 [wrapper] Pilot exit status: 0
[2026-01-14 02:09:46] 2026-01-14 01:09:46,872 [wrapper] pandaids: 6969262488
[2026-01-14 02:09:46] 2026-01-14 01:09:46,893 [wrapper] cleanup supervisor_pilot  492167 476034
[2026-01-14 02:09:46] 2026-01-14 01:09:46,896 [wrapper] Test setup, not cleaning
[2026-01-14 02:09:46] 2026-01-14 01:09:46,900 [wrapper] apfmon messages muted
[2026-01-14 02:09:46] 2026-01-14 01:09:46,904 [wrapper] ==== wrapper stdout END ====
[2026-01-14 02:09:46] 2026-01-14 01:09:46,907 [wrapper] ==== wrapper stderr END ====
[2026-01-14 02:09:46]  *** Error codes and diagnostics ***
[2026-01-14 02:09:46]     "exeErrorCode": 0,
[2026-01-14 02:09:46]     "exeErrorDiag": "",
[2026-01-14 02:09:46]     "pilotErrorCode": 0,
[2026-01-14 02:09:46]     "pilotErrorDiag": "",
[2026-01-14 02:09:46]  *** Listing of results directory ***
[2026-01-14 02:09:46] total 733584
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 02:09:46] -rwx------ 1 boinc boinc     36322 Jan 13 22:56 runpilot2-wrapper.sh
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc      5112 Jan 13 23:04 queuedata.json
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc       100 Jan 14 01:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 02:09:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 01:22 run_atlas
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc       105 Jan 14 01:22 job.xml
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc 594480984 Jan 14 01:22 EVNT.32794306._000127.pool.root.1
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc    592391 Jan 14 01:22 input.tar.gz
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc     15847 Jan 14 01:22 start_atlas.sh
[2026-01-14 02:09:46] drwxrwx--x 2 boinc boinc      4096 Jan 14 01:22 shared
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc         0 Jan 14 01:22 boinc_setup_complete
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc      6371 Jan 14 01:22 init_data.xml
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc         0 Jan 14 01:22 boinc_lockfile
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc      2504 Jan 14 01:22 pandaJob.out
[2026-01-14 02:09:46] -rw------- 1 boinc boinc    997218 Jan 14 01:22 agis_schedconf.cvmfs.json
[2026-01-14 02:09:46] -rw------- 1 boinc boinc   1516246 Jan 14 01:22 agis_ddmendpoints.agis.ALL.json
[2026-01-14 02:09:46] drwx------ 5 boinc boinc      4096 Jan 14 01:22 pilot3
[2026-01-14 02:09:46] -rw------- 1 boinc boinc 151443536 Jan 14 02:08 HITS.48215263._003172.pool.root.1
[2026-01-14 02:09:46] -rw------- 1 boinc boinc        95 Jan 14 02:08 pilot_heartbeat.json
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc       530 Jan 14 02:08 boinc_task_state.xml
[2026-01-14 02:09:46] -rw------- 1 boinc boinc      1020 Jan 14 02:09 memory_monitor_summary.json
[2026-01-14 02:09:46] -rw------- 1 boinc boinc    248133 Jan 14 02:09 log.48215263._003172.job.log.tgz.1
[2026-01-14 02:09:46] -rw------- 1 boinc boinc      7751 Jan 14 02:09 heartbeat.json
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc        27 Jan 14 02:09 wrapper_checkpoint.txt
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc      8192 Jan 14 02:09 boinc_mmap_file
[2026-01-14 02:09:46] -rw------- 1 boinc boinc      4823 Jan 14 02:09 pilotlog.txt
[2026-01-14 02:09:46] -rw------- 1 boinc boinc    433252 Jan 14 02:09 log.48215263._003172.job.log.1
[2026-01-14 02:09:46] -rw------- 1 boinc boinc       357 Jan 14 02:09 output.list
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc       620 Jan 14 02:09 runtime_log
[2026-01-14 02:09:46] -rw------- 1 boinc boinc    696320 Jan 14 02:09 result.tar.gz
[2026-01-14 02:09:46] -rw------- 1 boinc boinc       659 Jan 14 02:09 veGKDmiY1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMViKDmjG2Qrm.diag
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc      8907 Jan 14 02:09 runtime_log.err
[2026-01-14 02:09:46] -rw-r--r-- 1 boinc boinc     11806 Jan 14 02:09 stderr.txt
[2026-01-14 02:09:46] HITS file was successfully produced:
[2026-01-14 02:09:46] -rw------- 1 boinc boinc 151443536 Jan 14 02:08 shared/HITS.pool.root.1
[2026-01-14 02:09:46]  *** Contents of shared directory: ***
[2026-01-14 02:09:46] total 729728
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc 594480984 Jan 14 01:22 ATLAS.root_0
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc    592391 Jan 14 01:22 input.tar.gz
[2026-01-14 02:09:46] -rw-r--r-- 2 boinc boinc     15847 Jan 14 01:22 start_atlas.sh
[2026-01-14 02:09:46] -rw------- 1 boinc boinc 151443536 Jan 14 02:08 HITS.pool.root.1
[2026-01-14 02:09:46] -rw------- 1 boinc boinc    696320 Jan 14 02:09 result.tar.gz
02:09:47 (472244): run_atlas exited; CPU time 10200.679713
02:09:47 (472244): called boinc_finish(0)

</stderr_txt>
]]>

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