Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:23:51 (843649): wrapper (7.7.26015): starting
18:23:51 (843649): wrapper: running run_atlas (--nthreads 11)
[2026-01-13 18:23:51] Arguments: --nthreads 11
[2026-01-13 18:23:51] Threads: 11
[2026-01-13 18:23:51] Checking for CVMFS
[2026-01-13 18:23:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 18:23:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 18:23:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 18:23:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 18:23:52] 2.13.3.0 7236 29294 181312 155107 1 708 22173964 40960000 18913 16776704 0 47987454 99.743 30173911 39123 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 18:23:52] CVMFS is ok
[2026-01-13 18:23:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 18:23:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 18:23:52] Further information can be found at the LHC@home message board.
[2026-01-13 18:23:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 18:23:52] Checking for apptainer binary...
[2026-01-13 18:23:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 18:23:52] Running /usr/bin/apptainer --version
[2026-01-13 18:23:52] apptainer version 1.4.5-2.el9
[2026-01-13 18:23:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 18:23:53] c-212-11.aglt2.org
[2026-01-13 18:23:53] apptainer works
[2026-01-13 18:23:53] Set ATHENA_PROC_NUMBER=11
[2026-01-13 18:23:53] Set ATHENA_CORE_NUMBER=11
[2026-01-13 18:23:53] Starting ATLAS job with PandaID=6969258313
[2026-01-13 18:23:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 19:07:33]  *** The last 200 lines of the pilot log: ***
[2026-01-13 19:07:33]  storage_token=
[2026-01-13 19:07:33]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6969258313/log.48215263._001590.job.log.tgz.1
[2026-01-13 19:07:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/46/log.48215263._001590.job.log.tgz.1
[2026-01-13 19:07:33]  workdir=None
[2026-01-13 19:07:33] ]
[2026-01-13 19:07:33] 2026-01-14 00:06:19,986 | INFO     | transferring file log.48215263._001590.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6969258313/log.48215263._001590.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 19:07:33] 2026-01-14 00:06:19,986 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6969258313/log.48215263._001590.job.log.tgz.1 /tmp/boinchome/slots/2/log.48215263._001590.job
[2026-01-13 19:07:33] 2026-01-14 00:06:20,048 | INFO     | adding to output.list: log.48215263._001590.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/46/log.48215263._001590.job.log.tg
[2026-01-13 19:07:33] 2026-01-14 00:06:20,049 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 19:07:33] 2026-01-14 00:06:20,049 | INFO     | summary of transferred files:
[2026-01-13 19:07:33] 2026-01-14 00:06:20,049 | INFO     |  -- lfn=log.48215263._001590.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 19:07:33] 2026-01-14 00:06:20,050 | INFO     | stage-out finished correctly
[2026-01-13 19:07:33] 2026-01-14 00:06:21,353 | INFO     | monitor loop #180: job 0:6969258313 is in state 'finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:21,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 19:07:33] 2026-01-14 00:06:21,375 | INFO     | time since job start (2519s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:22,758 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 19:07:33] 2026-01-14 00:06:23,381 | INFO     | time since job start (2521s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:23,854 | INFO     | monitor loop #181: job 0:6969258313 is in state 'finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:23,854 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 19:07:33] 2026-01-14 00:06:25,387 | INFO     | time since job start (2523s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:25,461 | INFO     | job 6969258313 has state=finished
[2026-01-13 19:07:33] 2026-01-14 00:06:25,461 | INFO     | preparing for final server update for job 6969258313 in state='finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:25,462 | INFO     | this job has now completed (state=finished)
[2026-01-13 19:07:33] 2026-01-14 00:06:25,462 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 19:07:33] 2026-01-14 00:06:25,462 | INFO     | log transfer has been attempted: DONE
[2026-01-13 19:07:33] 2026-01-14 00:06:25,462 | INFO     | job 6969258313 has finished - writing final server update
[2026-01-13 19:07:33] 2026-01-14 00:06:25,462 | INFO     | total number of processed events: 400 (read)
[2026-01-13 19:07:33] 2026-01-14 00:06:25,470 | INFO     | executing command: lscpu
[2026-01-13 19:07:33] 2026-01-14 00:06:25,534 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 19:07:33] 2026-01-14 00:06:26,357 | INFO     | monitor loop #182: job 0:6969258313 is in state 'finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:26,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 19:07:33] 2026-01-14 00:06:27,393 | INFO     | time since job start (2525s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:28,864 | INFO     | monitor loop #183: job 0:6969258313 is in state 'finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:28,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 19:07:33] 2026-01-14 00:06:29,400 | INFO     | time since job start (2527s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:31,368 | INFO     | monitor loop #184: job 0:6969258313 is in state 'finished'
[2026-01-13 19:07:33] 2026-01-14 00:06:31,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 19:07:33] 2026-01-14 00:06:31,407 | INFO     | time since job start (2529s) is within the limit (349056.0s)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,032 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 19:07:33] 2026-01-14 00:06:33,038 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3230.766781250001
[2026-01-13 19:07:33] 2026-01-14 00:06:33,051 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6969258313/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,052 | INFO     | extracted standard info from prmon json
[2026-01-13 19:07:33] 2026-01-14 00:06:33,052 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 19:07:33] 2026-01-14 00:06:33,052 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 19:07:33] 2026-01-14 00:06:33,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 19:07:33] 2026-01-14 00:06:33,052 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 19:07:33] 2026-01-14 00:06:33,053 | INFO     | fitting pss+swap vs Time
[2026-01-13 19:07:33] 2026-01-14 00:06:33,053 | INFO     | sum of square deviations: 12173499.764705881
[2026-01-13 19:07:33] 2026-01-14 00:06:33,053 | INFO     | sum of deviations: 272450127.1764706
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | mean x: 1768348020.6470587
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | mean y: 2684564.2647058824
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | intersect: -39573990379.64707
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | chi2: 0.000684130533313016
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | current memory leak: 22.38 B/s (using 34 data points, chi2=0.00)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | could have reported an average CPU frequency of 3218 MHz (5 samples)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | ..............................
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | . Timing measurements:
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | . get job = 0 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | . initial setup = 3 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,054 | INFO     | . payload setup = 13 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,055 | INFO     | . stage-in = 0 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,055 | INFO     | . payload execution = 2480 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,055 | INFO     | . stage-out = 0 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,055 | INFO     | . log creation = 0 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,055 | INFO     | ..............................
[2026-01-13 19:07:33] 2026-01-14 00:06:33,117 | INFO     | 
[2026-01-13 19:07:33] 2026-01-14 00:06:33,117 | INFO     | job summary report
[2026-01-13 19:07:33] 2026-01-14 00:06:33,117 | INFO     | --------------------------------------------------
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | PanDA job id: 6969258313
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | task id: 48215263
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | errors: (none)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | pilot state: finished 
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | transexitcode: 0
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | exeerrorcode: 0
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | exeerrordiag: 
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | exitcode: 0
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | exitmsg: OK
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | cpuconsumptiontime: 19308 s
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | nevents: 400
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | neventsw: 0
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | pid: 861243
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | pgrp: 861243
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | corecount: 11
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | event service: False
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | sizes: {0: 2283942, 9: 2284204, 11: 2284232, 2497: 2309390, 2498: 2318388, 2501: 2318444, 2511: 2318798}
[2026-01-13 19:07:33] 2026-01-14 00:06:33,118 | INFO     | --------------------------------------------------
[2026-01-13 19:07:33] 2026-01-14 00:06:33,119 | INFO     | 
[2026-01-13 19:07:33] 2026-01-14 00:06:33,119 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 19:07:33] 2026-01-14 00:06:33,151 | INFO     | job 6969258313 has completed (purged errors)
[2026-01-13 19:07:33] 2026-01-14 00:06:33,152 | INFO     | overall cleanup function is called
[2026-01-13 19:07:33] 2026-01-14 00:06:34,160 | INFO     | --- collectZombieJob: --- 10, [861243]
[2026-01-13 19:07:33] 2026-01-14 00:06:34,160 | INFO     | zombie collector waiting for pid 861243
[2026-01-13 19:07:33] 2026-01-14 00:06:34,160 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 19:07:33] 2026-01-14 00:06:34,160 | INFO     | collected zombie processes
[2026-01-13 19:07:33] 2026-01-14 00:06:34,160 | INFO     | will attempt to kill all subprocesses of pid=861243
[2026-01-13 19:07:33] 2026-01-14 00:06:34,526 | INFO     | process IDs to be killed: [861243] (in reverse order)
[2026-01-13 19:07:33] 2026-01-14 00:06:34,679 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 19:07:33] 2026-01-14 00:06:34,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 19:07:33] 2026-01-14 00:06:34,696 | INFO     | did not find any defunct processes belonging to 861243
[2026-01-13 19:07:33] 2026-01-14 00:06:34,713 | INFO     | did not find any defunct processes belonging to 861243
[2026-01-13 19:07:33] 2026-01-14 00:06:34,713 | INFO     | ready for new job
[2026-01-13 19:07:33] 2026-01-14 00:06:34,713 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 19:07:33] 2026-01-14 00:06:34,714 | INFO     | ***************************************
[2026-01-13 19:07:33] 2026-01-14 00:06:34,715 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 19:07:33] 2026-01-14 00:06:34,715 | INFO     | ***************************************
[2026-01-13 19:07:33] 2026-01-14 00:06:34,715 | INFO     | 
[2026-01-13 19:07:33] 2026-01-14 00:06:34,720 | INFO     | architecture information:
[2026-01-13 19:07:33] 2026-01-14 00:06:34,720 | INFO     | executing command: cat /etc/os-release
[2026-01-13 19:07:33] 2026-01-14 00:06:34,744 | INFO     | cat /etc/os-release:
[2026-01-13 19:07:33] NAME="CentOS Linux"
[2026-01-13 19:07:33] VERSION="7 (Core)"
[2026-01-13 19:07:33] ID="centos"
[2026-01-13 19:07:33] ID_LIKE="rhel fedora"
[2026-01-13 19:07:33] VERSION_ID="7"
[2026-01-13 19:07:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 19:07:33] ANSI_COLOR="0;31"
[2026-01-13 19:07:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 19:07:33] HOME_URL="https://www.centos.org/"
[2026-01-13 19:07:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 19:07:33] 
[2026-01-13 19:07:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 19:07:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 19:07:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 19:07:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 19:07:33] 
[2026-01-13 19:07:33] 2026-01-14 00:06:34,744 | INFO     | ***************************************
[2026-01-13 19:07:33] 2026-01-14 00:06:35,248 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 19:07:33] 2026-01-14 00:06:35,272 | INFO     | sufficient remaining disk space (122319536128 B)
[2026-01-13 19:07:33] 2026-01-14 00:06:35,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 19:07:33] 2026-01-14 00:06:35,274 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 19:07:33] 2026-01-14 00:06:35,274 | INFO     | update_server=False
[2026-01-13 19:07:33] 2026-01-14 00:06:35,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 19:07:33] 2026-01-14 00:06:35,275 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 19:07:33] 2026-01-14 00:06:35,275 | INFO     | aborting loop
[2026-01-13 19:07:33] 2026-01-14 00:06:35,638 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 19:07:33] 2026-01-14 00:06:35,697 | INFO     | all data control threads have been joined
[2026-01-13 19:07:33] 2026-01-14 00:06:35,823 | INFO     | all payload control threads have been joined
[2026-01-13 19:07:33] 2026-01-14 00:06:36,280 | INFO     | [job] retrieve thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,281 | INFO     | [job] job monitor thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,293 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,295 | INFO     | [job] validate thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,531 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,703 | INFO     | [data] control thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:36,803 | INFO     | all job control threads have been joined
[2026-01-13 19:07:33] 2026-01-14 00:06:36,828 | INFO     | [payload] control thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,312 | INFO     | [payload] failed_post thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,408 | INFO     | [payload] validate_post thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,472 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,601 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,644 | INFO     | [data] copytool_out thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,654 | INFO     | [data] copytool_in thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,811 | INFO     | [job] control thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:37,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 19:07:33] 2026-01-14 00:06:38,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 19:07:33] 2026-01-14 00:06:39,134 | INFO     | [job] queue monitor thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:06:41,886 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 19:07:33] 2026-01-14 00:07:04,885 | INFO     | PID=851147 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 19:07:33] 2026-01-14 00:07:04,885 | INFO     | .. there are 19 such processes running
[2026-01-13 19:07:33] 2026-01-14 00:07:04,886 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 19:07:33] 2026-01-14 00:07:04,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 19:07:33] 2026-01-14 00:07:04,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 19:07:33] 2026-01-14 00:07:25,943 | INFO     | [monitor] cgroup control has ended
[2026-01-13 19:07:33] 2026-01-14 00:07:27,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176720795456)>', '<ExcThread(monitor, started 140176349177600)>']
[2026-01-13 19:07:33] 2026-01-14 00:07:28,008 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 19:07:33] 2026-01-14 00:07:28,008 | INFO     | [monitor] control thread has ended
[2026-01-13 19:07:33] 2026-01-14 00:07:32,652 | INFO     | all workflow threads have been joined
[2026-01-13 19:07:33] 2026-01-14 00:07:32,652 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 19:07:33] 2026-01-14 00:07:32,653 | INFO     | traces error code: 0
[2026-01-13 19:07:33] 2026-01-14 00:07:32,653 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 19:07:33] 2026-01-14 00:07:32,797 [wrapper] ==== pilot stdout END ====
[2026-01-13 19:07:33] 2026-01-14 00:07:32,807 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 19:07:33] 2026-01-14 00:07:32,817 [wrapper] pilotpid: 851147
[2026-01-13 19:07:33] 2026-01-14 00:07:32,836 [wrapper] Pilot exit status: 0
[2026-01-13 19:07:33] 2026-01-14 00:07:32,850 [wrapper] pandaids: 6969258313
[2026-01-13 19:07:33] 2026-01-14 00:07:33,025 [wrapper] cleanup supervisor_pilot  965407 851148
[2026-01-13 19:07:33] 2026-01-14 00:07:33,030 [wrapper] Test setup, not cleaning
[2026-01-13 19:07:33] 2026-01-14 00:07:33,036 [wrapper] apfmon messages muted
[2026-01-13 19:07:33] 2026-01-14 00:07:33,044 [wrapper] ==== wrapper stdout END ====
[2026-01-13 19:07:33] 2026-01-14 00:07:33,073 [wrapper] ==== wrapper stderr END ====
[2026-01-13 19:07:33]  *** Error codes and diagnostics ***
[2026-01-13 19:07:33]     "exeErrorCode": 0,
[2026-01-13 19:07:33]     "exeErrorDiag": "",
[2026-01-13 19:07:33]     "pilotErrorCode": 0,
[2026-01-13 19:07:33]     "pilotErrorDiag": "",
[2026-01-13 19:07:33]  *** Listing of results directory ***
[2026-01-13 19:07:33] total 732448
[2026-01-13 19:07:33] -rwx------. 1 boincer umatlas     36322 Jan 13 16:47 runpilot2-wrapper.sh
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 16:50 pilot3.tar.gz
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 16:50 queuedata.json
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas       100 Jan 13 18:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 19:07:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 18:23 run_atlas
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas       105 Jan 13 18:23 job.xml
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas 594250053 Jan 13 18:23 EVNT.32794306._000064.pool.root.1
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas    592385 Jan 13 18:23 input.tar.gz
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 18:23 start_atlas.sh
[2026-01-13 19:07:33] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 18:23 shared
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas         0 Jan 13 18:23 boinc_lockfile
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas      2503 Jan 13 18:23 pandaJob.out
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas        57 Jan 13 18:23 setup.sh.local
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas    997226 Jan 13 18:24 agis_schedconf.cvmfs.json
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas   1516246 Jan 13 18:24 agis_ddmendpoints.agis.ALL.json
[2026-01-13 19:07:33] drwx------. 5 boincer umatlas      4096 Jan 13 18:24 pilot3
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas      6956 Jan 13 19:03 init_data.xml
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas 150388428 Jan 13 19:05 HITS.48215263._001590.pool.root.1
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas       530 Jan 13 19:05 boinc_task_state.xml
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas      1029 Jan 13 19:06 memory_monitor_summary.json
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas    343754 Jan 13 19:06 log.48215263._001590.job.log.tgz.1
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas      7762 Jan 13 19:06 heartbeat.json
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas        95 Jan 13 19:07 pilot_heartbeat.json
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 19:07 boinc_mmap_file
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas        27 Jan 13 19:07 wrapper_checkpoint.txt
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas      4824 Jan 13 19:07 pilotlog.txt
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas    389252 Jan 13 19:07 log.48215263._001590.job.log.1
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas       357 Jan 13 19:07 output.list
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas       620 Jan 13 19:07 runtime_log
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas    747520 Jan 13 19:07 result.tar.gz
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas      9344 Jan 13 19:07 runtime_log.err
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas       653 Jan 13 19:07 GRXKDmZP1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuWoKDmqNbNVn.diag
[2026-01-13 19:07:33] -rw-r--r--. 1 boincer umatlas     22282 Jan 13 19:07 stderr.txt
[2026-01-13 19:07:33] HITS file was successfully produced:
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas 150388428 Jan 13 19:05 shared/HITS.pool.root.1
[2026-01-13 19:07:33]  *** Contents of shared directory: ***
[2026-01-13 19:07:33] total 728524
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas 594250053 Jan 13 18:23 ATLAS.root_0
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas    592385 Jan 13 18:23 input.tar.gz
[2026-01-13 19:07:33] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 18:23 start_atlas.sh
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas 150388428 Jan 13 19:05 HITS.pool.root.1
[2026-01-13 19:07:33] -rw-------. 1 boincer umatlas    747520 Jan 13 19:07 result.tar.gz
19:07:35 (843649): run_atlas exited; CPU time 19352.255673
19:07:35 (843649): called boinc_finish(0)

</stderr_txt>
]]>

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