Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:30:12 (1186684): wrapper (7.7.26015): starting
02:30:12 (1186684): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 02:30:12] Arguments: --nthreads 4
[2026-01-14 02:30:12] Threads: 4
[2026-01-14 02:30:12] Checking for CVMFS
[2026-01-14 02:30:12] No cvmfs_config command found, will try listing directly
[2026-01-14 02:30:12] CVMFS is ok
[2026-01-14 02:30:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 02:30:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 02:30:12] Further information can be found at the LHC@home message board.
[2026-01-14 02:30:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 02:30:12] Checking for apptainer binary...
[2026-01-14 02:30:12] which: no apptainer in ((null))
[2026-01-14 02:30:12] apptainer is not installed, using version from CVMFS
[2026-01-14 02:30:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 02:30:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-01-14 02:30:12] apptainer works
[2026-01-14 02:30:12] Set ATHENA_PROC_NUMBER=4
[2026-01-14 02:30:12] Set ATHENA_CORE_NUMBER=4
[2026-01-14 02:30:12] Starting ATLAS job with PandaID=6969259589
[2026-01-14 02:30:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 04:04:39]  *** The last 200 lines of the pilot log: ***
[2026-01-14 04:04:39]  surl=/scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6969259589/log.48215263._002163.job.log.tgz.1
[2026-01-14 04:04:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/f2/log.48215263._002163.job.log.tgz.1
[2026-01-14 04:04:39]  workdir=None
[2026-01-14 04:04:39] ]
[2026-01-14 04:04:39] 2026-01-14 03:03:30,520 | INFO     | transferring file log.48215263._002163.job.log.tgz.1 from /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6969259589/log.48215263._002163.job.log.tgz.1 to /scratch/
[2026-01-14 04:04:39] 2026-01-14 03:03:30,520 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6969259589/log.48215263._002163.job.log.tgz.1 /scratch/boinc/var/slot116/slots/0/
[2026-01-14 04:04:39] 2026-01-14 03:03:30,551 | INFO     | adding to output.list: log.48215263._002163.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/f2/log.48215263._002163.job.log.tg
[2026-01-14 04:04:39] 2026-01-14 03:03:30,552 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 04:04:39] 2026-01-14 03:03:30,553 | INFO     | summary of transferred files:
[2026-01-14 04:04:39] 2026-01-14 03:03:30,553 | INFO     |  -- lfn=log.48215263._002163.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 04:04:39] 2026-01-14 03:03:30,553 | INFO     | stage-out finished correctly
[2026-01-14 04:04:39] 2026-01-14 03:03:31,397 | INFO     | time since job start (5586s) is within the limit (349056.0s)
[2026-01-14 04:04:39] 2026-01-14 03:03:31,520 | WARNING  | process 1198082 can no longer be monitored (due to stat problems) - aborting
[2026-01-14 04:04:39] 2026-01-14 03:03:31,520 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6969259589/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 04:04:39] 2026-01-14 03:03:32,168 | INFO     | number of running child processes to parent process 1198082: 1
[2026-01-14 04:04:39] 2026-01-14 03:03:32,168 | INFO     | maximum number of monitored processes: 6
[2026-01-14 04:04:39] 2026-01-14 03:03:32,764 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 04:04:39] 2026-01-14 03:03:32,859 | INFO     | job 6969259589 has state=finished
[2026-01-14 04:04:39] 2026-01-14 03:03:32,859 | INFO     | preparing for final server update for job 6969259589 in state='finished'
[2026-01-14 04:04:39] 2026-01-14 03:03:32,860 | INFO     | this job has now completed (state=finished)
[2026-01-14 04:04:39] 2026-01-14 03:03:32,860 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 04:04:39] 2026-01-14 03:03:32,863 | INFO     | log transfer has been attempted: DONE
[2026-01-14 04:04:39] 2026-01-14 03:03:32,863 | INFO     | job 6969259589 has finished - writing final server update
[2026-01-14 04:04:39] 2026-01-14 03:03:32,864 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1494669/.job.ad'
[2026-01-14 04:04:39] 2026-01-14 03:03:32,864 | INFO     | total number of processed events: 400 (read)
[2026-01-14 04:04:39] 2026-01-14 03:03:32,866 | INFO     | executing command: lscpu
[2026-01-14 04:04:39] 2026-01-14 03:03:32,967 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 04:04:39] 2026-01-14 03:03:33,427 | INFO     | PID=1190691 has CPU usage=20.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-14 04:04:39] 2026-01-14 03:03:33,428 | INFO     | .. there are 9 such processes running
[2026-01-14 04:04:39] 2026-01-14 03:03:34,428 | INFO     | time since job start (5589s) is within the limit (349056.0s)
[2026-01-14 04:04:39] 2026-01-14 03:03:34,671 | INFO     | monitor loop #388: job 0:6969259589 is in state 'finished'
[2026-01-14 04:04:39] 2026-01-14 03:03:34,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 04:04:39] 2026-01-14 03:03:36,434 | INFO     | time since job start (5591s) is within the limit (349056.0s)
[2026-01-14 04:04:39] 2026-01-14 03:03:37,175 | INFO     | monitor loop #389: job 0:6969259589 is in state 'finished'
[2026-01-14 04:04:39] 2026-01-14 03:03:37,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 04:04:39] 2026-01-14 03:03:38,438 | INFO     | time since job start (5593s) is within the limit (349056.0s)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,136 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 04:04:39] 2026-01-14 03:03:39,158 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2731.052226562501
[2026-01-14 04:04:39] 2026-01-14 03:03:39,183 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6969259589/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,184 | INFO     | extracted standard info from prmon json
[2026-01-14 04:04:39] 2026-01-14 03:03:39,184 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 04:04:39] 2026-01-14 03:03:39,184 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 04:04:39] 2026-01-14 03:03:39,184 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 04:04:39] 2026-01-14 03:03:39,184 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 04:04:39] 2026-01-14 03:03:39,187 | INFO     | fitting pss+swap vs Time
[2026-01-14 04:04:39] 2026-01-14 03:03:39,187 | INFO     | sum of square deviations: 183761585.0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,187 | INFO     | sum of deviations: -9837122971.0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,187 | INFO     | mean x: 1768357094.5
[2026-01-14 04:04:39] 2026-01-14 03:03:39,187 | INFO     | mean y: 2434019.5476190476
[2026-01-14 04:04:39] 2026-01-14 03:03:39,188 | INFO     | intersect: 94666104858.24205
[2026-01-14 04:04:39] 2026-01-14 03:03:39,188 | INFO     | chi2: 0.021407057305261143
[2026-01-14 04:04:39] 2026-01-14 03:03:39,188 | INFO     | current memory leak: -53.53 B/s (using 84 data points, chi2=0.02)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,188 | INFO     | could have reported an average CPU frequency of 2726 MHz (7 samples)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,188 | INFO     | ..............................
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . Timing measurements:
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . get job = 0 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . initial setup = 1 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . payload setup = 8 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . stage-in = 0 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . payload execution = 5554 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . stage-out = 0 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | . log creation = 0 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,189 | INFO     | ..............................
[2026-01-14 04:04:39] 2026-01-14 03:03:39,286 | INFO     | 
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | job summary report
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | --------------------------------------------------
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | PanDA job id: 6969259589
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | task id: 48215263
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | errors: (none)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | pilot state: finished 
[2026-01-14 04:04:39] 2026-01-14 03:03:39,287 | INFO     | transexitcode: 0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | exeerrorcode: 0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | exeerrordiag: 
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | exitcode: 0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | exitmsg: OK
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | cpuconsumptiontime: 21056 s
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | nevents: 400
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | neventsw: 0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,288 | INFO     | pid: 1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | pgrp: 1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | corecount: 4
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | event service: False
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | sizes: {0: 2283783, 1: 2283982, 7: 2284244, 11: 2284272, 5567: 2311069, 5568: 2320091, 5570: 2320275, 5576: 2320469}
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | --------------------------------------------------
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | 
[2026-01-14 04:04:39] 2026-01-14 03:03:39,289 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2026-01-14 04:04:39] 2026-01-14 03:03:39,319 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,320 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,321 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 04:04:39] 2026-01-14 03:03:39,322 | INFO     | job 6969259589 has completed (purged errors)
[2026-01-14 04:04:39] 2026-01-14 03:03:39,322 | INFO     | overall cleanup function is called
[2026-01-14 04:04:39] 2026-01-14 03:03:40,330 | INFO     | --- collectZombieJob: --- 10, [1198082]
[2026-01-14 04:04:39] 2026-01-14 03:03:40,330 | INFO     | zombie collector waiting for pid 1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:40,331 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 04:04:39] 2026-01-14 03:03:40,331 | INFO     | collected zombie processes
[2026-01-14 04:04:39] 2026-01-14 03:03:40,331 | INFO     | will attempt to kill all subprocesses of pid=1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:41,072 | INFO     | process IDs to be killed: [1198082] (in reverse order)
[2026-01-14 04:04:39] 2026-01-14 03:03:41,301 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 04:04:39] 2026-01-14 03:03:41,301 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 04:04:39] 2026-01-14 03:03:41,330 | INFO     | did not find any defunct processes belonging to 1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:41,358 | INFO     | did not find any defunct processes belonging to 1198082
[2026-01-14 04:04:39] 2026-01-14 03:03:41,359 | INFO     | ready for new job
[2026-01-14 04:04:39] 2026-01-14 03:03:41,359 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 04:04:39] 2026-01-14 03:03:41,361 | INFO     | ***************************************
[2026-01-14 04:04:39] 2026-01-14 03:03:41,361 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 04:04:39] 2026-01-14 03:03:41,361 | INFO     | ***************************************
[2026-01-14 04:04:39] 2026-01-14 03:03:41,361 | INFO     | 
[2026-01-14 04:04:39] 2026-01-14 03:03:41,369 | INFO     | architecture information:
[2026-01-14 04:04:39] 2026-01-14 03:03:41,370 | INFO     | executing command: cat /etc/os-release
[2026-01-14 04:04:39] 2026-01-14 03:03:41,394 | INFO     | cat /etc/os-release:
[2026-01-14 04:04:39] NAME="CentOS Linux"
[2026-01-14 04:04:39] VERSION="7 (Core)"
[2026-01-14 04:04:39] ID="centos"
[2026-01-14 04:04:39] ID_LIKE="rhel fedora"
[2026-01-14 04:04:39] VERSION_ID="7"
[2026-01-14 04:04:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 04:04:39] ANSI_COLOR="0;31"
[2026-01-14 04:04:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 04:04:39] HOME_URL="https://www.centos.org/"
[2026-01-14 04:04:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 04:04:39] 
[2026-01-14 04:04:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 04:04:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 04:04:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 04:04:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 04:04:39] 
[2026-01-14 04:04:39] 2026-01-14 03:03:41,395 | INFO     | ***************************************
[2026-01-14 04:04:39] 2026-01-14 03:03:41,897 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2026-01-14 04:04:39] 2026-01-14 03:03:41,924 | INFO     | sufficient remaining disk space (3322305052672 B)
[2026-01-14 04:04:39] 2026-01-14 03:03:41,925 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 04:04:39] 2026-01-14 03:03:41,925 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 04:04:39] 2026-01-14 03:03:41,925 | INFO     | update_server=False
[2026-01-14 04:04:39] 2026-01-14 03:03:41,925 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 04:04:39] 2026-01-14 03:03:41,926 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 04:04:39] 2026-01-14 03:03:42,186 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 04:04:39] 2026-01-14 03:03:42,186 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 04:04:39] 2026-01-14 03:03:42,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:04:39] 2026-01-14 03:03:42,186 | INFO     | will abort loop
[2026-01-14 04:04:39] 2026-01-14 03:03:42,195 | INFO     | all payload control threads have been joined
[2026-01-14 04:04:39] 2026-01-14 03:03:42,266 | INFO     | all data control threads have been joined
[2026-01-14 04:04:39] 2026-01-14 03:03:42,931 | INFO     | [job] retrieve thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,192 | INFO     | [job] job monitor thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,200 | INFO     | [payload] control thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,271 | INFO     | [data] control thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,367 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 04:04:39] 2026-01-14 03:03:43,461 | INFO     | all job control threads have been joined
[2026-01-14 04:04:39] 2026-01-14 03:03:43,465 | INFO     | [job] validate thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,546 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,600 | INFO     | [payload] validate_post thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,931 | INFO     | [data] copytool_out thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:43,961 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:44,002 | INFO     | [payload] failed_post thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:44,199 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:44,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 04:04:39] 2026-01-14 03:03:44,331 | INFO     | [data] copytool_in thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:44,466 | INFO     | [job] control thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:45,300 | INFO     | [job] queue monitor thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:03:47,373 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 04:04:39] 2026-01-14 03:04:12,440 | INFO     | PID=1190691 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 04:04:39] 2026-01-14 03:04:12,440 | INFO     | .. there are 9 such processes running
[2026-01-14 04:04:39] 2026-01-14 03:04:12,441 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 04:04:39] 2026-01-14 03:04:12,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 04:04:39] 2026-01-14 03:04:12,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 04:04:39] 2026-01-14 03:04:33,654 | INFO     | [monitor] cgroup control has ended
[2026-01-14 04:04:39] 2026-01-14 03:04:34,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22958021388096)>', '<ExcThread(monitor, started 22957785057024)>']
[2026-01-14 04:04:39] 2026-01-14 03:04:34,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 04:04:39] 2026-01-14 03:04:34,531 | INFO     | [monitor] control thread has ended
[2026-01-14 04:04:39] 2026-01-14 03:04:39,358 | INFO     | all workflow threads have been joined
[2026-01-14 04:04:39] 2026-01-14 03:04:39,358 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 04:04:39] 2026-01-14 03:04:39,359 | INFO     | traces error code: 0
[2026-01-14 04:04:39] 2026-01-14 03:04:39,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 04:04:39] 2026-01-14 03:04:39,507 [wrapper] ==== pilot stdout END ====
[2026-01-14 04:04:39] 2026-01-14 03:04:39,510 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 04:04:39] 2026-01-14 03:04:39,514 [wrapper] pilotpid: 1190691
[2026-01-14 04:04:39] 2026-01-14 03:04:39,518 [wrapper] Pilot exit status: 0
[2026-01-14 04:04:39] 2026-01-14 03:04:39,532 [wrapper] pandaids: 6969259589
[2026-01-14 04:04:39] 2026-01-14 03:04:39,696 [wrapper] cleanup supervisor_pilot 1391207 1190692
[2026-01-14 04:04:39] 2026-01-14 03:04:39,700 [wrapper] Test setup, not cleaning
[2026-01-14 04:04:39] 2026-01-14 03:04:39,705 [wrapper] apfmon messages muted
[2026-01-14 04:04:39] 2026-01-14 03:04:39,708 [wrapper] ==== wrapper stdout END ====
[2026-01-14 04:04:39] 2026-01-14 03:04:39,711 [wrapper] ==== wrapper stderr END ====
[2026-01-14 04:04:39]  *** Error codes and diagnostics ***
[2026-01-14 04:04:39]     "exeErrorCode": 0,
[2026-01-14 04:04:39]     "exeErrorDiag": "",
[2026-01-14 04:04:39]     "pilotErrorCode": 0,
[2026-01-14 04:04:39]     "pilotErrorDiag": "",
[2026-01-14 04:04:39]  *** Listing of results directory ***
[2026-01-14 04:04:39] total 727936
[2026-01-14 04:04:39] -rwx------ 1 boinc boinc     36322 Jan 13 22:48 runpilot2-wrapper.sh
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:50 pilot3.tar.gz
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc      5112 Jan 13 22:52 queuedata.json
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc       100 Jan 14 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 04:04:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 00:00 run_atlas
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc       105 Jan 14 00:00 job.xml
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc 592953859 Jan 14 02:30 EVNT.32794306._000087.pool.root.1
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc      6692 Jan 14 02:30 init_data.xml
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:30 start_atlas.sh
[2026-01-14 04:04:39] drwxrwx--x 2 boinc boinc      4096 Jan 14 02:30 shared
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc    592388 Jan 14 02:30 input.tar.gz
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc         0 Jan 14 02:30 boinc_lockfile
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc      2503 Jan 14 02:30 pandaJob.out
[2026-01-14 04:04:39] -rw------- 1 boinc boinc    997226 Jan 14 02:30 agis_schedconf.cvmfs.json
[2026-01-14 04:04:39] -rw------- 1 boinc boinc   1516246 Jan 14 02:30 agis_ddmendpoints.agis.ALL.json
[2026-01-14 04:04:39] drwx------ 5 boinc boinc      4096 Jan 14 02:30 pilot3
[2026-01-14 04:04:39] -rw------- 1 boinc boinc 146357827 Jan 14 04:02 HITS.48215263._002163.pool.root.1
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc       529 Jan 14 04:03 boinc_task_state.xml
[2026-01-14 04:04:39] -rw------- 1 boinc boinc      1026 Jan 14 04:03 memory_monitor_summary.json
[2026-01-14 04:04:39] -rw------- 1 boinc boinc    278452 Jan 14 04:03 log.48215263._002163.job.log.tgz.1
[2026-01-14 04:04:39] -rw------- 1 boinc boinc      7792 Jan 14 04:03 heartbeat.json
[2026-01-14 04:04:39] -rw------- 1 boinc boinc        95 Jan 14 04:04 pilot_heartbeat.json
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc      8192 Jan 14 04:04 boinc_mmap_file
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc        26 Jan 14 04:04 wrapper_checkpoint.txt
[2026-01-14 04:04:39] -rw------- 1 boinc boinc      5021 Jan 14 04:04 pilotlog.txt
[2026-01-14 04:04:39] -rw------- 1 boinc boinc    808400 Jan 14 04:04 log.48215263._002163.job.log.1
[2026-01-14 04:04:39] -rw------- 1 boinc boinc       357 Jan 14 04:04 output.list
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc       620 Jan 14 04:04 runtime_log
[2026-01-14 04:04:39] -rw------- 1 boinc boinc   1105920 Jan 14 04:04 result.tar.gz
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc      9222 Jan 14 04:04 runtime_log.err
[2026-01-14 04:04:39] -rw------- 1 boinc boinc       661 Jan 14 04:04 VZhLDmJQ1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLQiKDmlrteXo.diag
[2026-01-14 04:04:39] -rw-r--r-- 1 boinc boinc     22294 Jan 14 04:04 stderr.txt
[2026-01-14 04:04:39] HITS file was successfully produced:
[2026-01-14 04:04:39] -rw------- 1 boinc boinc 146357827 Jan 14 04:02 shared/HITS.pool.root.1
[2026-01-14 04:04:39]  *** Contents of shared directory: ***
[2026-01-14 04:04:39] total 723672
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc 592953859 Jan 14 02:30 ATLAS.root_0
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc     15847 Jan 14 02:30 start_atlas.sh
[2026-01-14 04:04:39] -rw-r--r-- 2 boinc boinc    592388 Jan 14 02:30 input.tar.gz
[2026-01-14 04:04:39] -rw------- 1 boinc boinc 146357827 Jan 14 04:02 HITS.pool.root.1
[2026-01-14 04:04:39] -rw------- 1 boinc boinc   1105920 Jan 14 04:04 result.tar.gz
04:04:41 (1186684): run_atlas exited; CPU time 21314.201112
04:04:41 (1186684): called boinc_finish(0)

</stderr_txt>
]]>

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