Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:49:25 (27835): wrapper (7.7.26015): starting
17:49:25 (27835): wrapper: running run_atlas (--nthreads 12)
[2026-01-13 17:49:25] Arguments: --nthreads 12
[2026-01-13 17:49:25] Threads: 12
[2026-01-13 17:49:25] Checking for CVMFS
[2026-01-13 17:49:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 17:49:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 17:49:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 17:49:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 17:49:26] 2.11.2.0 2925 357423 97508 155107 3 57 11047827 20275201 1 130560 1 148259938 99.954 20831297 16081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 17:49:26] CVMFS is ok
[2026-01-13 17:49:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 17:49:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 17:49:26] Further information can be found at the LHC@home message board.
[2026-01-13 17:49:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 17:49:26] Checking for apptainer binary...
[2026-01-13 17:49:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 17:49:26] Running /usr/bin/apptainer --version
[2026-01-13 17:49:26] apptainer version 1.3.2-1.el7
[2026-01-13 17:49:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 17:49:27] c-205-10.aglt2.org
[2026-01-13 17:49:27] apptainer works
[2026-01-13 17:49:27] Set ATHENA_PROC_NUMBER=12
[2026-01-13 17:49:27] Set ATHENA_CORE_NUMBER=12
[2026-01-13 17:49:27] Starting ATLAS job with PandaID=6969258467
[2026-01-13 17:49:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 18:37:03]  *** The last 200 lines of the pilot log: ***
[2026-01-13 18:37:03]  scope=mc23_13p6TeV
[2026-01-13 18:37:03]  status=None
[2026-01-13 18:37:03]  status_code=0
[2026-01-13 18:37:03]  storage_token=
[2026-01-13 18:37:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969258467/log.48215263._001744.job.log.tgz.1
[2026-01-13 18:37:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/a2/log.48215263._001744.job.log.tgz.1
[2026-01-13 18:37:03]  workdir=None
[2026-01-13 18:37:03] ]
[2026-01-13 18:37:03] 2026-01-13 23:36:24,202 | INFO     | transferring file log.48215263._001744.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969258467/log.48215263._001744.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 18:37:03] 2026-01-13 23:36:24,202 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969258467/log.48215263._001744.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._001744.job
[2026-01-13 18:37:03] 2026-01-13 23:36:24,226 | INFO     | adding to output.list: log.48215263._001744.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6c/a2/log.48215263._001744.job.log.tg
[2026-01-13 18:37:03] 2026-01-13 23:36:24,227 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 18:37:03] 2026-01-13 23:36:24,227 | INFO     | summary of transferred files:
[2026-01-13 18:37:03] 2026-01-13 23:36:24,228 | INFO     |  -- lfn=log.48215263._001744.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 18:37:03] 2026-01-13 23:36:24,228 | INFO     | stage-out finished correctly
[2026-01-13 18:37:03] 2026-01-13 23:36:24,825 | WARNING  | process 6217 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 18:37:03] 2026-01-13 23:36:24,825 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969258467/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 18:37:03] 2026-01-13 23:36:24,913 | INFO     | number of running child processes to parent process 6217: 1
[2026-01-13 18:37:03] 2026-01-13 23:36:24,913 | INFO     | maximum number of monitored processes: 6
[2026-01-13 18:37:03] 2026-01-13 23:36:25,300 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 18:37:03] 2026-01-13 23:36:25,378 | INFO     | job 6969258467 has state=finished
[2026-01-13 18:37:03] 2026-01-13 23:36:25,379 | INFO     | preparing for final server update for job 6969258467 in state='finished'
[2026-01-13 18:37:03] 2026-01-13 23:36:25,379 | INFO     | this job has now completed (state=finished)
[2026-01-13 18:37:03] 2026-01-13 23:36:25,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 18:37:03] 2026-01-13 23:36:25,379 | INFO     | log transfer has been attempted: DONE
[2026-01-13 18:37:03] 2026-01-13 23:36:25,380 | INFO     | job 6969258467 has finished - writing final server update
[2026-01-13 18:37:03] 2026-01-13 23:36:25,380 | INFO     | total number of processed events: 400 (read)
[2026-01-13 18:37:03] 2026-01-13 23:36:25,381 | INFO     | executing command: lscpu
[2026-01-13 18:37:03] 2026-01-13 23:36:25,408 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 18:37:03] 2026-01-13 23:36:25,940 | INFO     | time since job start (2803s) is within the limit (349056.0s)
[2026-01-13 18:37:03] 2026-01-13 23:36:27,416 | INFO     | monitor loop #212: job 0:6969258467 is in state 'finished'
[2026-01-13 18:37:03] 2026-01-13 23:36:27,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:37:03] 2026-01-13 23:36:27,946 | INFO     | time since job start (2805s) is within the limit (349056.0s)
[2026-01-13 18:37:03] 2026-01-13 23:36:29,919 | INFO     | monitor loop #213: job 0:6969258467 is in state 'finished'
[2026-01-13 18:37:03] 2026-01-13 23:36:29,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:37:03] 2026-01-13 23:36:29,948 | INFO     | time since job start (2807s) is within the limit (349056.0s)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,310 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 18:37:03] 2026-01-13 23:36:30,314 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-13 18:37:03] 2026-01-13 23:36:30,317 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969258467/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,317 | INFO     | extracted standard info from prmon json
[2026-01-13 18:37:03] 2026-01-13 23:36:30,318 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 18:37:03] 2026-01-13 23:36:30,318 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 18:37:03] 2026-01-13 23:36:30,318 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 18:37:03] 2026-01-13 23:36:30,318 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 18:37:03] 2026-01-13 23:36:30,319 | INFO     | fitting pss+swap vs Time
[2026-01-13 18:37:03] 2026-01-13 23:36:30,319 | INFO     | sum of square deviations: 18381740.0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | sum of deviations: -2238607768.0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | mean x: 1768346075.0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | mean y: 2920808.230769231
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | intersect: 215359751010.77475
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | chi2: 0.03698128396206672
[2026-01-13 18:37:03] 2026-01-13 23:36:30,320 | INFO     | current memory leak: -121.78 B/s (using 39 data points, chi2=0.04)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | could have reported an average CPU frequency of 1928 MHz (5 samples)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | ..............................
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . Timing measurements:
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . get job = 0 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . initial setup = 2 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . payload setup = 6 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . stage-in = 0 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . payload execution = 2773 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,321 | INFO     | . stage-out = 0 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,322 | INFO     | . log creation = 0 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,322 | INFO     | ..............................
[2026-01-13 18:37:03] 2026-01-13 23:36:30,401 | INFO     | 
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | job summary report
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | --------------------------------------------------
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | PanDA job id: 6969258467
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | task id: 48215263
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | errors: (none)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | pilot state: finished 
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | transexitcode: 0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | exeerrorcode: 0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | exeerrordiag: 
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | exitcode: 0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,403 | INFO     | exitmsg: OK
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | cpuconsumptiontime: 29421 s
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | nevents: 400
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | neventsw: 0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | pid: 6217
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | pgrp: 6217
[2026-01-13 18:37:03] 2026-01-13 23:36:30,404 | INFO     | corecount: 12
[2026-01-13 18:37:03] 2026-01-13 23:36:30,405 | INFO     | event service: False
[2026-01-13 18:37:03] 2026-01-13 23:36:30,405 | INFO     | sizes: {0: 2283771, 1: 2283970, 5: 2284232, 11: 2284288, 2784: 2309525, 2785: 2318523, 2786: 2318707, 2791: 2318933}
[2026-01-13 18:37:03] 2026-01-13 23:36:30,405 | INFO     | --------------------------------------------------
[2026-01-13 18:37:03] 2026-01-13 23:36:30,405 | INFO     | 
[2026-01-13 18:37:03] 2026-01-13 23:36:30,405 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 18:37:03] 2026-01-13 23:36:30,428 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,430 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,431 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,432 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 18:37:03] 2026-01-13 23:36:30,432 | INFO     | job 6969258467 has completed (purged errors)
[2026-01-13 18:37:03] 2026-01-13 23:36:30,432 | INFO     | overall cleanup function is called
[2026-01-13 18:37:03] 2026-01-13 23:36:31,069 | INFO     | PID=31516 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 18:37:03] 2026-01-13 23:36:31,440 | INFO     | --- collectZombieJob: --- 10, [6217]
[2026-01-13 18:37:03] 2026-01-13 23:36:31,440 | INFO     | zombie collector waiting for pid 6217
[2026-01-13 18:37:03] 2026-01-13 23:36:31,440 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 18:37:03] 2026-01-13 23:36:31,441 | INFO     | collected zombie processes
[2026-01-13 18:37:03] 2026-01-13 23:36:31,441 | INFO     | will attempt to kill all subprocesses of pid=6217
[2026-01-13 18:37:03] 2026-01-13 23:36:31,531 | INFO     | process IDs to be killed: [6217] (in reverse order)
[2026-01-13 18:37:03] 2026-01-13 23:36:31,585 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 18:37:03] 2026-01-13 23:36:31,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 18:37:03] 2026-01-13 23:36:31,589 | INFO     | did not find any defunct processes belonging to 6217
[2026-01-13 18:37:03] 2026-01-13 23:36:31,592 | INFO     | did not find any defunct processes belonging to 6217
[2026-01-13 18:37:03] 2026-01-13 23:36:31,592 | INFO     | ready for new job
[2026-01-13 18:37:03] 2026-01-13 23:36:31,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 18:37:03] 2026-01-13 23:36:31,594 | INFO     | ***************************************
[2026-01-13 18:37:03] 2026-01-13 23:36:31,594 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 18:37:03] 2026-01-13 23:36:31,594 | INFO     | ***************************************
[2026-01-13 18:37:03] 2026-01-13 23:36:31,594 | INFO     | 
[2026-01-13 18:37:03] 2026-01-13 23:36:31,595 | INFO     | architecture information:
[2026-01-13 18:37:03] 2026-01-13 23:36:31,595 | INFO     | executing command: cat /etc/os-release
[2026-01-13 18:37:03] 2026-01-13 23:36:31,610 | INFO     | cat /etc/os-release:
[2026-01-13 18:37:03] NAME="CentOS Linux"
[2026-01-13 18:37:03] VERSION="7 (Core)"
[2026-01-13 18:37:03] ID="centos"
[2026-01-13 18:37:03] ID_LIKE="rhel fedora"
[2026-01-13 18:37:03] VERSION_ID="7"
[2026-01-13 18:37:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 18:37:03] ANSI_COLOR="0;31"
[2026-01-13 18:37:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 18:37:03] HOME_URL="https://www.centos.org/"
[2026-01-13 18:37:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 18:37:03] 
[2026-01-13 18:37:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 18:37:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 18:37:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 18:37:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 18:37:03] 
[2026-01-13 18:37:03] 2026-01-13 23:36:31,610 | INFO     | ***************************************
[2026-01-13 18:37:03] 2026-01-13 23:36:32,113 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 18:37:03] 2026-01-13 23:36:32,132 | INFO     | sufficient remaining disk space (28639756288 B)
[2026-01-13 18:37:03] 2026-01-13 23:36:32,132 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 18:37:03] 2026-01-13 23:36:32,133 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 18:37:03] 2026-01-13 23:36:32,133 | INFO     | update_server=False
[2026-01-13 18:37:03] 2026-01-13 23:36:32,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 18:37:03] 2026-01-13 23:36:32,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 18:37:03] 2026-01-13 23:36:32,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:37:03] 2026-01-13 23:36:32,176 | INFO     | all data control threads have been joined
[2026-01-13 18:37:03] 2026-01-13 23:36:32,321 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 18:37:03] 2026-01-13 23:36:32,422 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 18:37:03] 2026-01-13 23:36:32,422 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 18:37:03] 2026-01-13 23:36:32,422 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:37:03] 2026-01-13 23:36:32,423 | INFO     | will abort loop
[2026-01-13 18:37:03] 2026-01-13 23:36:32,945 | INFO     | all payload control threads have been joined
[2026-01-13 18:37:03] 2026-01-13 23:36:33,139 | INFO     | [job] retrieve thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,139 | INFO     | [job] queue monitor thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,182 | INFO     | [data] control thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,223 | INFO     | [payload] failed_post thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,390 | INFO     | all job control threads have been joined
[2026-01-13 18:37:03] 2026-01-13 23:36:33,428 | INFO     | [job] job monitor thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,848 | INFO     | [payload] validate_post thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,864 | INFO     | [job] validate thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,928 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:33,946 | INFO     | [payload] control thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,107 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,111 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,327 | INFO     | [data] copytool_out thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,396 | INFO     | [job] control thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,481 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:34,514 | INFO     | [data] copytool_in thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:36,140 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 18:37:03] 2026-01-13 23:36:46,808 | INFO     | [monitor] cgroup control has ended
[2026-01-13 18:37:03] 2026-01-13 23:36:48,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637298521920)>', '<ExcThread(monitor, started 140636850202368)>']
[2026-01-13 18:37:03] 2026-01-13 23:36:53,271 | INFO     | all workflow threads have been joined
[2026-01-13 18:37:03] 2026-01-13 23:36:53,271 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 18:37:03] 2026-01-13 23:36:53,271 | INFO     | traces error code: 0
[2026-01-13 18:37:03] 2026-01-13 23:36:53,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 18:37:03] 2026-01-13 23:37:03,271 | INFO     | PID=31516 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 18:37:03] 2026-01-13 23:37:03,272 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 18:37:03] 2026-01-13 23:37:03,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 18:37:03] 2026-01-13 23:37:03,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 18:37:03] 2026-01-13 23:37:03,272 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 18:37:03] 2026-01-13 23:37:03,272 | INFO     | [monitor] control thread has ended
[2026-01-13 18:37:03] 2026-01-13 23:37:03,370 [wrapper] ==== pilot stdout END ====
[2026-01-13 18:37:03] 2026-01-13 23:37:03,374 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 18:37:03] 2026-01-13 23:37:03,378 [wrapper] pilotpid: 31516
[2026-01-13 18:37:03] 2026-01-13 23:37:03,382 [wrapper] Pilot exit status: 0
[2026-01-13 18:37:03] 2026-01-13 23:37:03,398 [wrapper] pandaids: 6969258467
[2026-01-13 18:37:03] 2026-01-13 23:37:03,443 [wrapper] cleanup supervisor_pilot 24317 31517
[2026-01-13 18:37:03] 2026-01-13 23:37:03,447 [wrapper] Test setup, not cleaning
[2026-01-13 18:37:03] 2026-01-13 23:37:03,451 [wrapper] apfmon messages muted
[2026-01-13 18:37:03] 2026-01-13 23:37:03,456 [wrapper] ==== wrapper stdout END ====
[2026-01-13 18:37:03] 2026-01-13 23:37:03,460 [wrapper] ==== wrapper stderr END ====
[2026-01-13 18:37:03]  *** Error codes and diagnostics ***
[2026-01-13 18:37:03]     "exeErrorCode": 0,
[2026-01-13 18:37:03]     "exeErrorDiag": "",
[2026-01-13 18:37:03]     "pilotErrorCode": 0,
[2026-01-13 18:37:03]     "pilotErrorDiag": "",
[2026-01-13 18:37:03]  *** Listing of results directory ***
[2026-01-13 18:37:03] total 732212
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas    597923 Jan  7 08:01 pilot3.tar.gz
[2026-01-13 18:37:03] -rwx------ 1 boincer umatlas     36322 Jan 13 16:47 runpilot2-wrapper.sh
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 16:50 queuedata.json
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas       100 Jan 13 17:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 18:37:03] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 17:49 run_atlas
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas       105 Jan 13 17:49 job.xml
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas 593406943 Jan 13 17:49 EVNT.32794306._000070.pool.root.1
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 17:49 start_atlas.sh
[2026-01-13 18:37:03] drwxrwx--x 2 boincer umatlas      4096 Jan 13 17:49 shared
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas    610534 Jan 13 17:49 input.tar.gz
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas         0 Jan 13 17:49 boinc_lockfile
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas      2503 Jan 13 17:49 pandaJob.out
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas        57 Jan 13 17:49 setup.sh.local
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas    997226 Jan 13 17:49 agis_schedconf.cvmfs.json
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas   1516246 Jan 13 17:49 agis_ddmendpoints.agis.ALL.json
[2026-01-13 18:37:03] drwx------ 7 boincer umatlas      4096 Jan 13 17:49 pilot3
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas      5953 Jan 13 18:29 init_data.xml
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas 150819859 Jan 13 18:35 HITS.48215263._001744.pool.root.1
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas       531 Jan 13 18:36 boinc_task_state.xml
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas        95 Jan 13 18:36 pilot_heartbeat.json
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas      1042 Jan 13 18:36 memory_monitor_summary.json
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas    368080 Jan 13 18:36 log.48215263._001744.job.log.tgz.1
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas      7842 Jan 13 18:36 heartbeat.json
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 18:36 boinc_mmap_file
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas        27 Jan 13 18:36 wrapper_checkpoint.txt
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas       745 Jan 13 18:37 pilotlog.txt
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas    431107 Jan 13 18:37 log.48215263._001744.job.log.1
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas       357 Jan 13 18:37 output.list
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas       620 Jan 13 18:37 runtime_log
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas    819200 Jan 13 18:37 result.tar.gz
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas      9344 Jan 13 18:37 runtime_log.err
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas       659 Jan 13 18:37 K06LDmjP1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJOiKDmwxQfxn.diag
[2026-01-13 18:37:03] -rw-r--r-- 1 boincer umatlas     22085 Jan 13 18:37 stderr.txt
[2026-01-13 18:37:03] HITS file was successfully produced:
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas 150819859 Jan 13 18:35 shared/HITS.pool.root.1
[2026-01-13 18:37:03]  *** Contents of shared directory: ***
[2026-01-13 18:37:03] total 728212
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas 593406943 Jan 13 17:49 ATLAS.root_0
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 17:49 start_atlas.sh
[2026-01-13 18:37:03] -rw-r--r-- 2 boincer umatlas    610534 Jan 13 17:49 input.tar.gz
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas 150819859 Jan 13 18:35 HITS.pool.root.1
[2026-01-13 18:37:03] -rw------- 1 boincer umatlas    819200 Jan 13 18:37 result.tar.gz
18:37:05 (27835): run_atlas exited; CPU time 29348.136139
18:37:05 (27835): called boinc_finish(0)

</stderr_txt>
]]>

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