Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:20:23 (2068296): wrapper (7.7.26015): starting
23:20:23 (2068296): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 23:20:23] Arguments: --nthreads 4
[2026-01-13 23:20:23] Threads: 4
[2026-01-13 23:20:23] Checking for CVMFS
[2026-01-13 23:20:23] No cvmfs_config command found, will try listing directly
[2026-01-13 23:20:23] CVMFS is ok
[2026-01-13 23:20:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 23:20:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 23:20:23] Further information can be found at the LHC@home message board.
[2026-01-13 23:20:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 23:20:23] Checking for apptainer binary...
[2026-01-13 23:20:23] which: no apptainer in ((null))
[2026-01-13 23:20:23] apptainer is not installed, using version from CVMFS
[2026-01-13 23:20:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 23:20:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2026-01-13 23:20:24] apptainer works
[2026-01-13 23:20:24] Set ATHENA_PROC_NUMBER=4
[2026-01-13 23:20:24] Set ATHENA_CORE_NUMBER=4
[2026-01-13 23:20:24] Starting ATLAS job with PandaID=6969257051
[2026-01-13 23:20:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 01:47:53]  *** The last 200 lines of the pilot log: ***
[2026-01-14 01:47:53] 2026-01-14 00:27:43,738 | INFO     | monitor loop #561: job 0:6969257051 is in state 'finished'
[2026-01-14 01:47:53] 2026-01-14 00:27:43,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 01:47:53] 2026-01-14 00:27:44,884 | INFO     | time since job start (7629s) is within the limit (349056.0s)
[2026-01-14 01:47:53] 2026-01-14 00:27:46,241 | INFO     | monitor loop #562: job 0:6969257051 is in state 'finished'
[2026-01-14 01:47:53] 2026-01-14 00:27:46,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 01:47:53] 2026-01-14 00:27:46,889 | INFO     | time since job start (7631s) is within the limit (349056.0s)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,744 | INFO     | monitor loop #563: job 0:6969257051 is in state 'finished'
[2026-01-14 01:47:53] 2026-01-14 00:27:48,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,815 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 01:47:53] 2026-01-14 00:27:48,822 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2634.521325
[2026-01-14 01:47:53] 2026-01-14 00:27:48,830 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6969257051/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,831 | INFO     | extracted standard info from prmon json
[2026-01-14 01:47:53] 2026-01-14 00:27:48,831 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 01:47:53] 2026-01-14 00:27:48,831 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 01:47:53] 2026-01-14 00:27:48,832 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 01:47:53] 2026-01-14 00:27:48,832 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 01:47:53] 2026-01-14 00:27:48,835 | INFO     | fitting pss+swap vs Time
[2026-01-14 01:47:53] 2026-01-14 00:27:48,835 | INFO     | sum of square deviations: 605592750.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,836 | INFO     | sum of deviations: -27248928994.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,836 | INFO     | mean x: 1768346642.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,836 | INFO     | mean y: 2548650.288
[2026-01-14 01:47:53] 2026-01-14 00:27:48,836 | INFO     | intersect: 79570132781.10254
[2026-01-14 01:47:53] 2026-01-14 00:27:48,837 | INFO     | chi2: 1.6421688095408724
[2026-01-14 01:47:53] 2026-01-14 00:27:48,837 | INFO     | sum of square deviations: 535786790.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,838 | INFO     | sum of deviations: -23992031359.499996
[2026-01-14 01:47:53] 2026-01-14 00:27:48,838 | INFO     | mean x: 1768346489.5
[2026-01-14 01:47:53] 2026-01-14 00:27:48,838 | INFO     | mean y: 2555768.441666667
[2026-01-14 01:47:53] 2026-01-14 00:27:48,838 | INFO     | intersect: 79187457715.251
[2026-01-14 01:47:53] 2026-01-14 00:27:48,839 | INFO     | chi2: 1.6426899047345442
[2026-01-14 01:47:53] 2026-01-14 00:27:48,839 | INFO     | current chi2=1.6426899047345442 (change=-0.031732133179263024 %)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,839 | INFO     | right removable region: 119
[2026-01-14 01:47:53] 2026-01-14 00:27:48,839 | INFO     | sum of square deviations: 535786790.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,840 | INFO     | sum of deviations: -43602634568.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,840 | INFO     | mean x: 1768346794.5
[2026-01-14 01:47:53] 2026-01-14 00:27:48,840 | INFO     | mean y: 2583580.066666667
[2026-01-14 01:47:53] 2026-01-14 00:27:48,840 | INFO     | intersect: 143911654332.0307
[2026-01-14 01:47:53] 2026-01-14 00:27:48,840 | INFO     | chi2: 0.21906733319498423
[2026-01-14 01:47:53] 2026-01-14 00:27:48,841 | INFO     | current chi2=0.21906733319498423 (change=86.65987735717424 %)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,841 | INFO     | sum of square deviations: 471562330.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,842 | INFO     | sum of deviations: -40558751526.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,842 | INFO     | mean x: 1768346947.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,842 | INFO     | mean y: 2576334.808695652
[2026-01-14 01:47:53] 2026-01-14 00:27:48,842 | INFO     | intersect: 152096880464.51663
[2026-01-14 01:47:53] 2026-01-14 00:27:48,842 | INFO     | chi2: 0.20837267542148633
[2026-01-14 01:47:53] 2026-01-14 00:27:48,843 | INFO     | current chi2=0.20837267542148633 (change=4.881904397849659 %)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,843 | INFO     | left removable region: 20
[2026-01-14 01:47:53] 2026-01-14 00:27:48,843 | INFO     | sum of square deviations: 300842850.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,843 | INFO     | sum of deviations: -30097017591.000004
[2026-01-14 01:47:53] 2026-01-14 00:27:48,844 | INFO     | mean x: 1768347069.0
[2026-01-14 01:47:53] 2026-01-14 00:27:48,844 | INFO     | mean y: 2568091.3131313133
[2026-01-14 01:47:53] 2026-01-14 00:27:48,844 | INFO     | intersect: 176912116856.34543
[2026-01-14 01:47:53] 2026-01-14 00:27:48,844 | INFO     | chi2: 0.18583175339816654
[2026-01-14 01:47:53] 2026-01-14 00:27:48,844 | INFO     | current memory leak: -100.04 B/s (using 99 data points, chi2=0.19)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | could have reported an average CPU frequency of 2614 MHz (8 samples)
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | ..............................
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | . Timing measurements:
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | . get job = 0 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | . initial setup = 1 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,845 | INFO     | . payload setup = 5 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,846 | INFO     | . stage-in = 0 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,846 | INFO     | . payload execution = 7600 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,846 | INFO     | . stage-out = 0 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,846 | INFO     | . log creation = 0 s
[2026-01-14 01:47:53] 2026-01-14 00:27:48,846 | INFO     | ..............................
[2026-01-14 01:47:53] 2026-01-14 00:27:48,899 | INFO     | time since job start (7633s) is within the limit (349056.0s)
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | 
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | job summary report
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | --------------------------------------------------
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | PanDA job id: 6969257051
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | task id: 48215263
[2026-01-14 01:47:53] 2026-01-14 00:27:49,372 | INFO     | errors: (none)
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | pilot state: finished 
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | transexitcode: 0
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | exeerrorcode: 0
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | exeerrordiag: 
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | exitcode: 0
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | exitmsg: OK
[2026-01-14 01:47:53] 2026-01-14 00:27:49,373 | INFO     | cpuconsumptiontime: 29143 s
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | nevents: 400
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | neventsw: 0
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | pid: 2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | pgrp: 2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | corecount: 4
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | event service: False
[2026-01-14 01:47:53] 2026-01-14 00:27:49,374 | INFO     | sizes: {0: 2283110, 1: 2283977, 5: 2284239, 12: 2284295, 7610: 2311958, 7611: 2321162, 7619: 2321300}
[2026-01-14 01:47:53] 2026-01-14 00:27:49,375 | INFO     | --------------------------------------------------
[2026-01-14 01:47:53] 2026-01-14 00:27:49,375 | INFO     | 
[2026-01-14 01:47:53] 2026-01-14 00:27:49,375 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2026-01-14 01:47:53] 2026-01-14 00:27:49,393 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,393 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | job 6969257051 has completed (purged errors)
[2026-01-14 01:47:53] 2026-01-14 00:27:49,396 | INFO     | overall cleanup function is called
[2026-01-14 01:47:53] 2026-01-14 00:27:50,404 | INFO     | --- collectZombieJob: --- 10, [2079351]
[2026-01-14 01:47:53] 2026-01-14 00:27:50,404 | INFO     | zombie collector waiting for pid 2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:50,404 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 01:47:53] 2026-01-14 00:27:50,405 | INFO     | collected zombie processes
[2026-01-14 01:47:53] 2026-01-14 00:27:50,405 | INFO     | will attempt to kill all subprocesses of pid=2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:50,698 | INFO     | process IDs to be killed: [2079351] (in reverse order)
[2026-01-14 01:47:53] 2026-01-14 00:27:50,774 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 01:47:53] 2026-01-14 00:27:50,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 01:47:53] 2026-01-14 00:27:50,782 | INFO     | did not find any defunct processes belonging to 2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:50,790 | INFO     | did not find any defunct processes belonging to 2079351
[2026-01-14 01:47:53] 2026-01-14 00:27:50,790 | INFO     | ready for new job
[2026-01-14 01:47:53] 2026-01-14 00:27:50,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 01:47:53] 2026-01-14 00:27:50,792 | INFO     | ***************************************
[2026-01-14 01:47:53] 2026-01-14 00:27:50,792 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 01:47:53] 2026-01-14 00:27:50,792 | INFO     | ***************************************
[2026-01-14 01:47:53] 2026-01-14 00:27:50,792 | INFO     | 
[2026-01-14 01:47:53] 2026-01-14 00:27:50,795 | INFO     | architecture information:
[2026-01-14 01:47:53] 2026-01-14 00:27:50,795 | INFO     | executing command: cat /etc/os-release
[2026-01-14 01:47:53] 2026-01-14 00:27:50,807 | INFO     | cat /etc/os-release:
[2026-01-14 01:47:53] NAME="CentOS Linux"
[2026-01-14 01:47:53] VERSION="7 (Core)"
[2026-01-14 01:47:53] ID="centos"
[2026-01-14 01:47:53] ID_LIKE="rhel fedora"
[2026-01-14 01:47:53] VERSION_ID="7"
[2026-01-14 01:47:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 01:47:53] ANSI_COLOR="0;31"
[2026-01-14 01:47:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 01:47:53] HOME_URL="https://www.centos.org/"
[2026-01-14 01:47:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 01:47:53] 
[2026-01-14 01:47:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 01:47:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 01:47:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 01:47:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 01:47:53] 
[2026-01-14 01:47:53] 2026-01-14 00:27:50,807 | INFO     | ***************************************
[2026-01-14 01:47:53] 2026-01-14 00:27:51,310 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2026-01-14 01:47:53] 2026-01-14 00:27:51,324 | INFO     | sufficient remaining disk space (1672654880768 B)
[2026-01-14 01:47:53] 2026-01-14 00:27:51,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 01:47:53] 2026-01-14 00:27:51,324 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 01:47:53] 2026-01-14 00:27:51,325 | INFO     | update_server=False
[2026-01-14 01:47:53] 2026-01-14 00:27:51,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 01:47:53] 2026-01-14 00:27:51,362 | INFO     | all data control threads have been joined
[2026-01-14 01:47:53] 2026-01-14 00:27:51,373 | INFO     | all job control threads have been joined
[2026-01-14 01:47:53] 2026-01-14 00:27:51,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 01:47:53] 2026-01-14 00:27:51,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 01:47:53] 2026-01-14 00:27:51,879 | INFO     | all payload control threads have been joined
[2026-01-14 01:47:53] 2026-01-14 00:27:52,252 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 01:47:53] 2026-01-14 00:27:52,252 | INFO     | aborting loop
[2026-01-14 01:47:53] 2026-01-14 00:27:52,330 | INFO     | [job] retrieve thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,368 | INFO     | [data] control thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,378 | INFO     | [job] control thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,443 | INFO     | [payload] failed_post thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,529 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,884 | INFO     | [payload] control thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:52,900 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,257 | INFO     | [job] job monitor thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,296 | INFO     | [data] copytool_in thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,388 | INFO     | [data] copytool_out thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,755 | INFO     | [job] validate thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,806 | INFO     | [payload] validate_post thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,818 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:53,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 01:47:53] 2026-01-14 00:27:54,975 | INFO     | [job] queue monitor thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:27:55,499 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 01:47:53] 2026-01-14 00:28:22,388 | INFO     | PID=2072275 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 01:47:53] 2026-01-14 00:28:22,389 | INFO     | .. there are 2 such processes running
[2026-01-14 01:47:53] 2026-01-14 00:28:22,390 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 01:47:53] 2026-01-14 00:28:22,390 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 01:47:53] 2026-01-14 00:28:22,390 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 01:47:53] 2026-01-14 00:28:46,323 | INFO     | [monitor] cgroup control has ended
[2026-01-14 01:47:53] 2026-01-14 00:28:48,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23210287687488)>', '<ExcThread(monitor, started 23210049369856)>']
[2026-01-14 01:47:53] 2026-01-14 00:28:48,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 01:47:53] 2026-01-14 00:28:48,517 | INFO     | [monitor] control thread has ended
[2026-01-14 01:47:53] 2026-01-14 00:28:53,140 | INFO     | all workflow threads have been joined
[2026-01-14 01:47:53] 2026-01-14 00:28:53,140 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 01:47:53] 2026-01-14 00:28:53,141 | INFO     | traces error code: 0
[2026-01-14 01:47:53] 2026-01-14 00:28:53,141 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 01:47:53] 2026-01-14 00:28:53,263 [wrapper] ==== pilot stdout END ====
[2026-01-14 01:47:53] 2026-01-14 00:28:53,265 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 01:47:53] 2026-01-14 00:28:53,268 [wrapper] pilotpid: 2072275
[2026-01-14 01:47:53] 2026-01-14 00:28:53,270 [wrapper] Pilot exit status: 0
[2026-01-14 01:47:53] 2026-01-14 00:28:53,279 [wrapper] pandaids: 6969257051
[2026-01-14 01:47:53] 2026-01-14 00:28:53,330 [wrapper] cleanup supervisor_pilot 2155260 2072276
[2026-01-14 01:47:53] 2026-01-14 00:28:53,333 [wrapper] Test setup, not cleaning
[2026-01-14 01:47:53] 2026-01-14 00:28:53,335 [wrapper] apfmon messages muted
[2026-01-14 01:47:53] 2026-01-14 00:28:53,338 [wrapper] ==== wrapper stdout END ====
[2026-01-14 01:47:53] 2026-01-14 00:28:53,340 [wrapper] ==== wrapper stderr END ====
[2026-01-14 01:47:53]  *** Error codes and diagnostics ***
[2026-01-14 01:47:53]     "exeErrorCode": 0,
[2026-01-14 01:47:53]     "exeErrorDiag": "",
[2026-01-14 01:47:53]     "pilotErrorCode": 0,
[2026-01-14 01:47:53]     "pilotErrorDiag": "",
[2026-01-14 01:47:53]  *** Listing of results directory ***
[2026-01-14 01:47:53] total 744836
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc    579449 Jan 13 22:45 pilot3.tar.gz
[2026-01-14 01:47:53] -rwx------ 1 boinc boinc     36322 Jan 13 22:46 runpilot2-wrapper.sh
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc      5112 Jan 13 22:47 queuedata.json
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc       100 Jan 13 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 01:47:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 23:20 run_atlas
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc       105 Jan 13 23:20 job.xml
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc      6426 Jan 13 23:20 init_data.xml
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc 599448609 Jan 13 23:20 EVNT.32794306._000040.pool.root.1
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc     15847 Jan 13 23:20 start_atlas.sh
[2026-01-14 01:47:53] drwxrwx--x 2 boinc boinc      4096 Jan 13 23:20 shared
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc    592391 Jan 13 23:20 input.tar.gz
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc         0 Jan 13 23:20 boinc_lockfile
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc      2501 Jan 13 23:20 pandaJob.out
[2026-01-14 01:47:53] -rw------- 1 boinc boinc    997226 Jan 13 23:20 agis_schedconf.cvmfs.json
[2026-01-14 01:47:53] -rw------- 1 boinc boinc   1516246 Jan 13 23:20 agis_ddmendpoints.agis.ALL.json
[2026-01-14 01:47:53] drwx------ 5 boinc boinc      4096 Jan 13 23:20 pilot3
[2026-01-14 01:47:53] -rw------- 1 boinc boinc 156486822 Jan 14 01:27 HITS.48215263._000998.pool.root.1
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc       528 Jan 14 01:27 boinc_task_state.xml
[2026-01-14 01:47:53] -rw------- 1 boinc boinc      1029 Jan 14 01:27 memory_monitor_summary.json
[2026-01-14 01:47:53] -rw------- 1 boinc boinc    324035 Jan 14 01:27 log.48215263._000998.job.log.tgz.1
[2026-01-14 01:47:53] -rw------- 1 boinc boinc      7823 Jan 14 01:27 heartbeat.json
[2026-01-14 01:47:53] -rw------- 1 boinc boinc        95 Jan 14 01:28 pilot_heartbeat.json
[2026-01-14 01:47:53] -rw------- 1 boinc boinc      4834 Jan 14 01:28 pilotlog.txt
[2026-01-14 01:47:53] -rw------- 1 boinc boinc   1104490 Jan 14 01:28 log.48215263._000998.job.log.1
[2026-01-14 01:47:53] -rw------- 1 boinc boinc       357 Jan 14 01:28 output.list
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc       620 Jan 14 01:28 runtime_log
[2026-01-14 01:47:53] -rw------- 1 boinc boinc   1443840 Jan 14 01:28 result.tar.gz
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc      9205 Jan 14 01:28 runtime_log.err
[2026-01-14 01:47:53] -rw------- 1 boinc boinc       662 Jan 14 01:28 ElBMDmBP1z8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWJiKDmfyQhsm.diag
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc        25 Jan 14 01:47 wrapper_checkpoint.txt
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc      8192 Jan 14 01:47 boinc_mmap_file
[2026-01-14 01:47:53] -rw-r--r-- 1 boinc boinc     21092 Jan 14 01:47 stderr.txt
[2026-01-14 01:47:53] HITS file was successfully produced:
[2026-01-14 01:47:53] -rw------- 1 boinc boinc 156486822 Jan 14 01:27 shared/HITS.pool.root.1
[2026-01-14 01:47:53]  *** Contents of shared directory: ***
[2026-01-14 01:47:53] total 740236
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc 599448609 Jan 13 23:20 ATLAS.root_0
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc     15847 Jan 13 23:20 start_atlas.sh
[2026-01-14 01:47:53] -rw-r--r-- 2 boinc boinc    592391 Jan 13 23:20 input.tar.gz
[2026-01-14 01:47:53] -rw------- 1 boinc boinc 156486822 Jan 14 01:27 HITS.pool.root.1
[2026-01-14 01:47:53] -rw------- 1 boinc boinc   1443840 Jan 14 01:28 result.tar.gz
01:47:55 (2068296): run_atlas exited; CPU time 29429.190506
01:47:55 (2068296): called boinc_finish(0)

</stderr_txt>
]]>

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