Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:05:30 (2541706): wrapper (7.7.26015): starting
17:05:30 (2541706): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 17:05:30] Arguments: --nthreads 8
[2026-01-13 17:05:30] Threads: 8
[2026-01-13 17:05:30] Checking for CVMFS
[2026-01-13 17:05:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 17:05:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 17:05:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 17:05:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 17:05:32] 2.13.3.0 9438 99725 239744 155105 3 227 34073652 40960001 55118 16776704 0 1262473698 99.735 896480501 48131 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-13 17:05:32] CVMFS is ok
[2026-01-13 17:05:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 17:05:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 17:05:32] Further information can be found at the LHC@home message board.
[2026-01-13 17:05:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 17:05:32] Checking for apptainer binary...
[2026-01-13 17:05:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 17:05:32] Running /usr/bin/apptainer --version
[2026-01-13 17:05:32] apptainer version 1.4.5-2.el9
[2026-01-13 17:05:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 17:05:33] c8-7-3.aglt2.org
[2026-01-13 17:05:33] apptainer works
[2026-01-13 17:05:33] Set ATHENA_PROC_NUMBER=8
[2026-01-13 17:05:33] Set ATHENA_CORE_NUMBER=8
[2026-01-13 17:05:33] Starting ATLAS job with PandaID=6969253667
[2026-01-13 17:05:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 18:49:17]  *** The last 200 lines of the pilot log: ***
[2026-01-13 18:49:17] 2026-01-13 23:47:59,305 | INFO     | monitor loop #387: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:47:59,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:00,338 | INFO     | job 6969253667 has state=finished
[2026-01-13 18:49:17] 2026-01-13 23:48:00,338 | INFO     | preparing for final server update for job 6969253667 in state='finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:00,338 | INFO     | this job has now completed (state=finished)
[2026-01-13 18:49:17] 2026-01-13 23:48:00,338 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 18:49:17] 2026-01-13 23:48:00,339 | INFO     | log transfer has been attempted: DONE
[2026-01-13 18:49:17] 2026-01-13 23:48:00,339 | INFO     | job 6969253667 has finished - writing final server update
[2026-01-13 18:49:17] 2026-01-13 23:48:00,339 | INFO     | total number of processed events: 400 (read)
[2026-01-13 18:49:17] 2026-01-13 23:48:00,339 | INFO     | executing command: lscpu
[2026-01-13 18:49:17] 2026-01-13 23:48:01,021 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 18:49:17] 2026-01-13 23:48:01,947 | INFO     | monitor loop #388: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:01,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:03,324 | INFO     | PID=2562142 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-13 18:49:17] 2026-01-13 23:48:03,324 | INFO     | .. there are 60 such processes running
[2026-01-13 18:49:17] 2026-01-13 23:48:04,326 | INFO     | time since job start (6065s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:04,460 | INFO     | monitor loop #389: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:04,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:06,345 | INFO     | time since job start (6067s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:06,969 | INFO     | monitor loop #390: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:06,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:08,352 | INFO     | time since job start (6069s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:09,474 | INFO     | monitor loop #391: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:09,474 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:10,359 | INFO     | time since job start (6071s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:11,996 | INFO     | monitor loop #392: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:11,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:12,370 | INFO     | time since job start (6073s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:14,377 | INFO     | time since job start (6075s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:14,506 | INFO     | monitor loop #393: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:14,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:16,383 | INFO     | time since job start (6077s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:17,011 | INFO     | monitor loop #394: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:17,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:18,390 | INFO     | time since job start (6079s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:19,516 | INFO     | monitor loop #395: job 0:6969253667 is in state 'finished'
[2026-01-13 18:49:17] 2026-01-13 23:48:19,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 18:49:17] 2026-01-13 23:48:20,397 | INFO     | time since job start (6081s) is within the limit (349056.0s)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,313 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-13 18:49:17] 2026-01-13 23:48:21,334 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1287578124998
[2026-01-13 18:49:17] 2026-01-13 23:48:21,402 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6969253667/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,403 | INFO     | extracted standard info from prmon json
[2026-01-13 18:49:17] 2026-01-13 23:48:21,403 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 18:49:17] 2026-01-13 23:48:21,403 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 18:49:17] 2026-01-13 23:48:21,403 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 18:49:17] 2026-01-13 23:48:21,403 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 18:49:17] 2026-01-13 23:48:21,404 | INFO     | fitting pss+swap vs Time
[2026-01-13 18:49:17] 2026-01-13 23:48:21,404 | INFO     | sum of square deviations: 226012907.59999987
[2026-01-13 18:49:17] 2026-01-13 23:48:21,405 | INFO     | sum of deviations: 10269669657.399994
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | mean x: 1768345201.6
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | mean y: 2538349.4
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | intersect: -80348275475.89148
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | chi2: 0.462928379793148
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | current memory leak: 45.44 B/s (using 90 data points, chi2=0.46)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | ..............................
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | . Timing measurements:
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | . get job = 0 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,410 | INFO     | . initial setup = 5 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | . payload setup = 53 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | . stage-in = 0 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | . payload execution = 5923 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | . stage-out = 4 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | . log creation = 0 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,411 | INFO     | ..............................
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | 
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | job summary report
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | --------------------------------------------------
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | PanDA job id: 6969253667
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | task id: 48215263
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | errors: (none)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,560 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | pilot state: finished 
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | transexitcode: 0
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | exeerrorcode: 0
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | exeerrordiag: 
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | exitcode: 0
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | exitmsg: OK
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | cpuconsumptiontime: 15296 s
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | nevents: 400
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | neventsw: 0
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | pid: 2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | pgrp: 2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | corecount: 8
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | event service: False
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | sizes: {0: 2283761, 1: 2283960, 12: 2283960, 23: 2283988, 32: 2284278, 34: 2284306, 5981: 2311096, 5983: 2311095, 5989: 2320205, 6013: 2320343}
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | --------------------------------------------------
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | 
[2026-01-13 18:49:17] 2026-01-13 23:48:21,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | job 6969253667 has completed (purged errors)
[2026-01-13 18:49:17] 2026-01-13 23:48:21,665 | INFO     | overall cleanup function is called
[2026-01-13 18:49:17] 2026-01-13 23:48:22,675 | INFO     | --- collectZombieJob: --- 10, [2583787]
[2026-01-13 18:49:17] 2026-01-13 23:48:22,675 | INFO     | zombie collector waiting for pid 2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:22,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 18:49:17] 2026-01-13 23:48:22,675 | INFO     | collected zombie processes
[2026-01-13 18:49:17] 2026-01-13 23:48:22,675 | INFO     | will attempt to kill all subprocesses of pid=2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:24,311 | INFO     | process IDs to be killed: [2583787] (in reverse order)
[2026-01-13 18:49:17] 2026-01-13 23:48:24,550 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 18:49:17] 2026-01-13 23:48:24,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 18:49:17] 2026-01-13 23:48:24,659 | INFO     | did not find any defunct processes belonging to 2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:24,739 | INFO     | did not find any defunct processes belonging to 2583787
[2026-01-13 18:49:17] 2026-01-13 23:48:24,739 | INFO     | ready for new job
[2026-01-13 18:49:17] 2026-01-13 23:48:24,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 18:49:17] 2026-01-13 23:48:24,741 | INFO     | ***************************************
[2026-01-13 18:49:17] 2026-01-13 23:48:24,741 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 18:49:17] 2026-01-13 23:48:24,741 | INFO     | ***************************************
[2026-01-13 18:49:17] 2026-01-13 23:48:24,741 | INFO     | 
[2026-01-13 18:49:17] 2026-01-13 23:48:24,749 | INFO     | architecture information:
[2026-01-13 18:49:17] 2026-01-13 23:48:24,759 | INFO     | executing command: cat /etc/os-release
[2026-01-13 18:49:17] 2026-01-13 23:48:24,844 | INFO     | cat /etc/os-release:
[2026-01-13 18:49:17] NAME="CentOS Linux"
[2026-01-13 18:49:17] VERSION="7 (Core)"
[2026-01-13 18:49:17] ID="centos"
[2026-01-13 18:49:17] ID_LIKE="rhel fedora"
[2026-01-13 18:49:17] VERSION_ID="7"
[2026-01-13 18:49:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 18:49:17] ANSI_COLOR="0;31"
[2026-01-13 18:49:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 18:49:17] HOME_URL="https://www.centos.org/"
[2026-01-13 18:49:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 18:49:17] 
[2026-01-13 18:49:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 18:49:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 18:49:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 18:49:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 18:49:17] 
[2026-01-13 18:49:17] 2026-01-13 23:48:24,844 | INFO     | ***************************************
[2026-01-13 18:49:17] 2026-01-13 23:48:25,355 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2026-01-13 18:49:17] 2026-01-13 23:48:25,384 | INFO     | sufficient remaining disk space (166736166912 B)
[2026-01-13 18:49:17] 2026-01-13 23:48:25,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 18:49:17] 2026-01-13 23:48:25,385 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 18:49:17] 2026-01-13 23:48:25,385 | INFO     | update_server=False
[2026-01-13 18:49:17] 2026-01-13 23:48:25,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 18:49:17] 2026-01-13 23:48:25,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:49:17] 2026-01-13 23:48:25,572 | INFO     | aborting loop
[2026-01-13 18:49:17] 2026-01-13 23:48:25,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 18:49:17] 2026-01-13 23:48:25,883 | INFO     | all data control threads have been joined
[2026-01-13 18:49:17] 2026-01-13 23:48:25,998 | INFO     | all payload control threads have been joined
[2026-01-13 18:49:17] 2026-01-13 23:48:26,391 | INFO     | [job] retrieve thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,574 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,574 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,580 | INFO     | [job] job monitor thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,618 | INFO     | all job control threads have been joined
[2026-01-13 18:49:17] 2026-01-13 23:48:26,619 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:49:17] 2026-01-13 23:48:26,633 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,701 | INFO     | [data] copytool_in thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,701 | INFO     | [job] validate thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,880 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 18:49:17] 2026-01-13 23:48:26,885 | INFO     | [payload] validate_post thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,889 | INFO     | [data] control thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:26,911 | INFO     | [payload] failed_post thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:27,004 | INFO     | [payload] control thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:27,574 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:27,625 | INFO     | [job] queue monitor thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:27,627 | INFO     | [job] control thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:27,674 | INFO     | [data] copytool_out thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:30,889 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 18:49:17] 2026-01-13 23:48:54,707 | INFO     | PID=2562142 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 18:49:17] 2026-01-13 23:48:54,710 | INFO     | .. there are 59 such processes running
[2026-01-13 18:49:17] 2026-01-13 23:48:54,710 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 18:49:17] 2026-01-13 23:48:54,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 18:49:17] 2026-01-13 23:48:54,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 18:49:17] 2026-01-13 23:49:09,452 | INFO     | [monitor] cgroup control has ended
[2026-01-13 18:49:17] 2026-01-13 23:49:10,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562503608128)>', '<ExcThread(monitor, started 140561780561664)>']
[2026-01-13 18:49:17] 2026-01-13 23:49:10,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 18:49:17] 2026-01-13 23:49:10,818 | INFO     | [monitor] control thread has ended
[2026-01-13 18:49:17] 2026-01-13 23:49:15,200 | INFO     | all workflow threads have been joined
[2026-01-13 18:49:17] 2026-01-13 23:49:15,200 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 18:49:17] 2026-01-13 23:49:15,200 | INFO     | traces error code: 0
[2026-01-13 18:49:17] 2026-01-13 23:49:15,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 18:49:17] 2026-01-13 23:49:16,162 [wrapper] ==== pilot stdout END ====
[2026-01-13 18:49:17] 2026-01-13 23:49:16,208 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 18:49:17] 2026-01-13 23:49:16,245 [wrapper] pilotpid: 2562142
[2026-01-13 18:49:17] 2026-01-13 23:49:16,276 [wrapper] Pilot exit status: 0
[2026-01-13 18:49:17] 2026-01-13 23:49:16,355 [wrapper] pandaids: 6969253667
[2026-01-13 18:49:17] 2026-01-13 23:49:16,636 [wrapper] cleanup supervisor_pilot 3497820 2562143
[2026-01-13 18:49:17] 2026-01-13 23:49:16,641 [wrapper] Test setup, not cleaning
[2026-01-13 18:49:17] 2026-01-13 23:49:16,668 [wrapper] apfmon messages muted
[2026-01-13 18:49:17] 2026-01-13 23:49:16,702 [wrapper] ==== wrapper stdout END ====
[2026-01-13 18:49:17] 2026-01-13 23:49:16,723 [wrapper] ==== wrapper stderr END ====
[2026-01-13 18:49:17]  *** Error codes and diagnostics ***
[2026-01-13 18:49:17]     "exeErrorCode": 0,
[2026-01-13 18:49:17]     "exeErrorDiag": "",
[2026-01-13 18:49:17]     "pilotErrorCode": 0,
[2026-01-13 18:49:17]     "pilotErrorDiag": "",
[2026-01-13 18:49:17]  *** Listing of results directory ***
[2026-01-13 18:49:17] total 736284
[2026-01-13 18:49:17] -rwx------. 1 boincer umatlas     36322 Jan 13 16:45 runpilot2-wrapper.sh
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 16:45 pilot3.tar.gz
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 16:47 queuedata.json
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas       100 Jan 13 17:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 18:49:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 17:05 run_atlas
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas       105 Jan 13 17:05 job.xml
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas 594012439 Jan 13 17:05 EVNT.32794306._000002.pool.root.1
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 17:05 start_atlas.sh
[2026-01-13 18:49:17] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 17:05 shared
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas    592383 Jan 13 17:05 input.tar.gz
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas         0 Jan 13 17:05 boinc_lockfile
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas      2498 Jan 13 17:05 pandaJob.out
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas        57 Jan 13 17:05 setup.sh.local
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas    997234 Jan 13 17:06 agis_schedconf.cvmfs.json
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas   1516246 Jan 13 17:06 agis_ddmendpoints.agis.ALL.json
[2026-01-13 18:49:17] drwx------. 5 boincer umatlas      4096 Jan 13 17:06 pilot3
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas      7172 Jan 13 18:37 init_data.xml
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas 153741078 Jan 13 18:46 HITS.48215263._000039.pool.root.1
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas       530 Jan 13 18:47 boinc_task_state.xml
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas      1036 Jan 13 18:47 memory_monitor_summary.json
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas    343314 Jan 13 18:47 log.48215263._000039.job.log.tgz.1
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas        95 Jan 13 18:48 pilot_heartbeat.json
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas      7765 Jan 13 18:48 heartbeat.json
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 18:49 boinc_mmap_file
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas        27 Jan 13 18:49 wrapper_checkpoint.txt
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas      4825 Jan 13 18:49 pilotlog.txt
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas    791048 Jan 13 18:49 log.48215263._000039.job.log.1
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas       357 Jan 13 18:49 output.list
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas       620 Jan 13 18:49 runtime_log
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas   1157120 Jan 13 18:49 result.tar.gz
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas      9332 Jan 13 18:49 runtime_log.err
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas       651 Jan 13 18:49 PpCODm1N1z8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnMoKDmOYBrtm.diag
[2026-01-13 18:49:17] -rw-r--r--. 1 boincer umatlas     22379 Jan 13 18:49 stderr.txt
[2026-01-13 18:49:17] HITS file was successfully produced:
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas 153741078 Jan 13 18:46 shared/HITS.pool.root.1
[2026-01-13 18:49:17]  *** Contents of shared directory: ***
[2026-01-13 18:49:17] total 731968
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas 594012439 Jan 13 17:05 ATLAS.root_0
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 17:05 start_atlas.sh
[2026-01-13 18:49:17] -rw-r--r--. 2 boincer umatlas    592383 Jan 13 17:05 input.tar.gz
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas 153741078 Jan 13 18:46 HITS.pool.root.1
[2026-01-13 18:49:17] -rw-------. 1 boincer umatlas   1157120 Jan 13 18:49 result.tar.gz
18:49:39 (2541706): run_atlas exited; CPU time 15508.771210
18:49:39 (2541706): called boinc_finish(0)

</stderr_txt>
]]>

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