Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:13:58 (11706): wrapper (7.7.26015): starting
15:13:58 (11706): wrapper: running run_atlas (--nthreads 12)
[2026-01-13 15:13:58] Arguments: --nthreads 12
[2026-01-13 15:13:58] Threads: 12
[2026-01-13 15:13:58] Checking for CVMFS
[2026-01-13 15:13:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 15:13:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 15:13:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 15:13:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 15:13:59] 2.11.2.0 3165 142888 96188 155101 3 1 12257750 20275200 1 130560 0 52077901 99.886 8546457 38776 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 15:13:59] CVMFS is ok
[2026-01-13 15:13:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 15:13:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 15:13:59] Further information can be found at the LHC@home message board.
[2026-01-13 15:13:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 15:13:59] Checking for apptainer binary...
[2026-01-13 15:13:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 15:13:59] Running /usr/bin/apptainer --version
[2026-01-13 15:13:59] apptainer version 1.3.2-1.el7
[2026-01-13 15:13:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 15:14:00] c-115-40.aglt2.org
[2026-01-13 15:14:00] apptainer works
[2026-01-13 15:14:00] Set ATHENA_PROC_NUMBER=12
[2026-01-13 15:14:00] Set ATHENA_CORE_NUMBER=12
[2026-01-13 15:14:00] Starting ATLAS job with PandaID=6969130871
[2026-01-13 15:14:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 16:47:46]  *** The last 200 lines of the pilot log: ***
[2026-01-13 16:47:46]  protocol_id=None
[2026-01-13 16:47:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 16:47:46]  replicas=None
[2026-01-13 16:47:46]  scope=mc23_13p6TeV
[2026-01-13 16:47:46]  status=None
[2026-01-13 16:47:46]  status_code=0
[2026-01-13 16:47:46]  storage_token=
[2026-01-13 16:47:46]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969130871/log.48213070._000074.job.log.tgz.1
[2026-01-13 16:47:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/75/log.48213070._000074.job.log.tgz.1
[2026-01-13 16:47:46]  workdir=None
[2026-01-13 16:47:46] ]
[2026-01-13 16:47:46] 2026-01-13 21:47:08,997 | INFO     | transferring file log.48213070._000074.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969130871/log.48213070._000074.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 16:47:46] 2026-01-13 21:47:08,998 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969130871/log.48213070._000074.job.log.tgz.1 /tmp/boinchome/slots/0/log.48213070._000074.job
[2026-01-13 16:47:46] 2026-01-13 21:47:09,021 | INFO     | adding to output.list: log.48213070._000074.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/06/75/log.48213070._000074.job.log.tg
[2026-01-13 16:47:46] 2026-01-13 21:47:09,022 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 16:47:46] 2026-01-13 21:47:09,023 | INFO     | summary of transferred files:
[2026-01-13 16:47:46] 2026-01-13 21:47:09,023 | INFO     |  -- lfn=log.48213070._000074.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 16:47:46] 2026-01-13 21:47:09,023 | INFO     | stage-out finished correctly
[2026-01-13 16:47:46] 2026-01-13 21:47:09,103 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 16:47:46] 2026-01-13 21:47:09,352 | INFO     | time since job start (5573s) is within the limit (349056.0s)
[2026-01-13 16:47:46] 2026-01-13 21:47:10,384 | INFO     | job 6969130871 has state=finished
[2026-01-13 16:47:46] 2026-01-13 21:47:10,384 | INFO     | preparing for final server update for job 6969130871 in state='finished'
[2026-01-13 16:47:46] 2026-01-13 21:47:10,385 | INFO     | this job has now completed (state=finished)
[2026-01-13 16:47:46] 2026-01-13 21:47:10,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 16:47:46] 2026-01-13 21:47:10,385 | INFO     | log transfer has been attempted: DONE
[2026-01-13 16:47:46] 2026-01-13 21:47:10,385 | INFO     | job 6969130871 has finished - writing final server update
[2026-01-13 16:47:46] 2026-01-13 21:47:10,386 | INFO     | total number of processed events: 400 (read)
[2026-01-13 16:47:46] 2026-01-13 21:47:10,387 | INFO     | executing command: lscpu
[2026-01-13 16:47:46] 2026-01-13 21:47:10,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 16:47:46] 2026-01-13 21:47:11,293 | WARNING  | process 22277 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 16:47:46] 2026-01-13 21:47:11,294 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969130871/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 16:47:46] 2026-01-13 21:47:11,358 | INFO     | time since job start (5575s) is within the limit (349056.0s)
[2026-01-13 16:47:46] 2026-01-13 21:47:11,383 | INFO     | number of running child processes to parent process 22277: 1
[2026-01-13 16:47:46] 2026-01-13 21:47:11,383 | INFO     | maximum number of monitored processes: 6
[2026-01-13 16:47:46] 2026-01-13 21:47:12,473 | INFO     | PID=15812 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 16:47:46] 2026-01-13 21:47:13,474 | INFO     | time since job start (5577s) is within the limit (349056.0s)
[2026-01-13 16:47:46] 2026-01-13 21:47:13,886 | INFO     | monitor loop #416: job 0:6969130871 is in state 'finished'
[2026-01-13 16:47:46] 2026-01-13 21:47:13,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 16:47:46] 2026-01-13 21:47:14,974 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 16:47:46] 2026-01-13 21:47:14,978 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5
[2026-01-13 16:47:46] 2026-01-13 21:47:14,980 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969130871/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 16:47:46] 2026-01-13 21:47:14,981 | INFO     | extracted standard info from prmon json
[2026-01-13 16:47:46] 2026-01-13 21:47:14,981 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 16:47:46] 2026-01-13 21:47:14,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 16:47:46] 2026-01-13 21:47:14,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 16:47:46] 2026-01-13 21:47:14,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 16:47:46] 2026-01-13 21:47:14,984 | INFO     | fitting pss+swap vs Time
[2026-01-13 16:47:46] 2026-01-13 21:47:14,984 | INFO     | sum of square deviations: 183761585.0
[2026-01-13 16:47:46] 2026-01-13 21:47:14,984 | INFO     | sum of deviations: 302695908.0000001
[2026-01-13 16:47:46] 2026-01-13 21:47:14,984 | INFO     | mean x: 1768338121.5
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | mean y: 2802237.285714286
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | intersect: -2910041126.2413096
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | chi2: 0.05976393105811687
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | current memory leak: 1.65 B/s (using 84 data points, chi2=0.06)
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | could have reported an average CPU frequency of 2134 MHz (7 samples)
[2026-01-13 16:47:46] 2026-01-13 21:47:14,985 | INFO     | ..............................
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . Timing measurements:
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . get job = 0 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . initial setup = 2 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . payload setup = 7 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . stage-in = 0 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . payload execution = 5543 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . stage-out = 0 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | . log creation = 0 s
[2026-01-13 16:47:46] 2026-01-13 21:47:14,986 | INFO     | ..............................
[2026-01-13 16:47:46] 2026-01-13 21:47:15,059 | INFO     | 
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | job summary report
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | --------------------------------------------------
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | PanDA job id: 6969130871
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | task id: 48213070
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | errors: (none)
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 16:47:46] 2026-01-13 21:47:15,060 | INFO     | pilot state: finished 
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | transexitcode: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | exeerrorcode: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | exeerrordiag: 
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | exitcode: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | exitmsg: OK
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | cpuconsumptiontime: 61041 s
[2026-01-13 16:47:46] 2026-01-13 21:47:15,061 | INFO     | nevents: 400
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | neventsw: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | pid: 22277
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | pgrp: 22277
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | corecount: 12
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | event service: False
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | sizes: {0: 2283902, 1: 2284157, 6: 2284419, 12: 2284447, 5554: 2311044, 5556: 2320042, 5557: 2320226, 5562: 2320420}
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | --------------------------------------------------
[2026-01-13 16:47:46] 2026-01-13 21:47:15,062 | INFO     | 
[2026-01-13 16:47:46] 2026-01-13 21:47:15,063 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 16:47:46] 2026-01-13 21:47:15,086 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,086 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,087 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | job 6969130871 has completed (purged errors)
[2026-01-13 16:47:46] 2026-01-13 21:47:15,089 | INFO     | overall cleanup function is called
[2026-01-13 16:47:46] 2026-01-13 21:47:16,097 | INFO     | --- collectZombieJob: --- 10, [22277]
[2026-01-13 16:47:46] 2026-01-13 21:47:16,098 | INFO     | zombie collector waiting for pid 22277
[2026-01-13 16:47:46] 2026-01-13 21:47:16,098 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 16:47:46] 2026-01-13 21:47:16,098 | INFO     | collected zombie processes
[2026-01-13 16:47:46] 2026-01-13 21:47:16,098 | INFO     | will attempt to kill all subprocesses of pid=22277
[2026-01-13 16:47:46] 2026-01-13 21:47:16,184 | INFO     | process IDs to be killed: [22277] (in reverse order)
[2026-01-13 16:47:46] 2026-01-13 21:47:16,234 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 16:47:46] 2026-01-13 21:47:16,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 16:47:46] 2026-01-13 21:47:16,239 | INFO     | did not find any defunct processes belonging to 22277
[2026-01-13 16:47:46] 2026-01-13 21:47:16,242 | INFO     | did not find any defunct processes belonging to 22277
[2026-01-13 16:47:46] 2026-01-13 21:47:16,242 | INFO     | ready for new job
[2026-01-13 16:47:46] 2026-01-13 21:47:16,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 16:47:46] 2026-01-13 21:47:16,244 | INFO     | ***************************************
[2026-01-13 16:47:46] 2026-01-13 21:47:16,244 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 16:47:46] 2026-01-13 21:47:16,244 | INFO     | ***************************************
[2026-01-13 16:47:46] 2026-01-13 21:47:16,244 | INFO     | 
[2026-01-13 16:47:46] 2026-01-13 21:47:16,245 | INFO     | architecture information:
[2026-01-13 16:47:46] 2026-01-13 21:47:16,245 | INFO     | executing command: cat /etc/os-release
[2026-01-13 16:47:46] 2026-01-13 21:47:16,260 | INFO     | cat /etc/os-release:
[2026-01-13 16:47:46] NAME="CentOS Linux"
[2026-01-13 16:47:46] VERSION="7 (Core)"
[2026-01-13 16:47:46] ID="centos"
[2026-01-13 16:47:46] ID_LIKE="rhel fedora"
[2026-01-13 16:47:46] VERSION_ID="7"
[2026-01-13 16:47:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 16:47:46] ANSI_COLOR="0;31"
[2026-01-13 16:47:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 16:47:46] HOME_URL="https://www.centos.org/"
[2026-01-13 16:47:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 16:47:46] 
[2026-01-13 16:47:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 16:47:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 16:47:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 16:47:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 16:47:46] 
[2026-01-13 16:47:46] 2026-01-13 21:47:16,261 | INFO     | ***************************************
[2026-01-13 16:47:46] 2026-01-13 21:47:16,764 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 16:47:46] 2026-01-13 21:47:16,783 | INFO     | sufficient remaining disk space (18400411648 B)
[2026-01-13 16:47:46] 2026-01-13 21:47:16,783 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 16:47:46] 2026-01-13 21:47:16,783 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 16:47:46] 2026-01-13 21:47:16,783 | INFO     | update_server=False
[2026-01-13 16:47:46] 2026-01-13 21:47:16,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 16:47:46] 2026-01-13 21:47:16,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:47:46] 2026-01-13 21:47:17,114 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 16:47:46] 2026-01-13 21:47:17,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:47:46] 2026-01-13 21:47:17,395 | INFO     | aborting loop
[2026-01-13 16:47:46] 2026-01-13 21:47:17,503 | INFO     | all data control threads have been joined
[2026-01-13 16:47:46] 2026-01-13 21:47:17,696 | INFO     | all job control threads have been joined
[2026-01-13 16:47:46] 2026-01-13 21:47:17,789 | INFO     | [job] retrieve thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:17,789 | INFO     | [job] queue monitor thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:17,849 | INFO     | all payload control threads have been joined
[2026-01-13 16:47:46] 2026-01-13 21:47:17,877 | INFO     | [payload] failed_post thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,049 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,259 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,400 | INFO     | [job] job monitor thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,509 | INFO     | [data] control thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,577 | INFO     | [data] copytool_in thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,699 | INFO     | [job] control thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:18,854 | INFO     | [payload] control thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,010 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,035 | INFO     | [payload] validate_post thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,119 | INFO     | [data] copytool_out thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,202 | INFO     | [job] validate thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,252 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:19,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 16:47:46] 2026-01-13 21:47:23,691 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 16:47:46] 2026-01-13 21:47:25,382 | INFO     | [monitor] cgroup control has ended
[2026-01-13 16:47:46] 2026-01-13 21:47:26,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077813937984)>', '<ExcThread(monitor, started 140077371995904)>']
[2026-01-13 16:47:46] 2026-01-13 21:47:31,167 | INFO     | all workflow threads have been joined
[2026-01-13 16:47:46] 2026-01-13 21:47:31,167 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 16:47:46] 2026-01-13 21:47:31,167 | INFO     | traces error code: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:31,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 16:47:46] 2026-01-13 21:47:46,674 | INFO     | PID=15812 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | CRITICAL | thread 'MainThread' is not alive
[2026-01-13 16:47:46] 2026-01-13 21:47:46,675 | INFO     | [monitor] control thread has ended
[2026-01-13 16:47:46] 2026-01-13 21:47:46,765 [wrapper] ==== pilot stdout END ====
[2026-01-13 16:47:46] 2026-01-13 21:47:46,769 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 16:47:46] 2026-01-13 21:47:46,773 [wrapper] pilotpid: 15812
[2026-01-13 16:47:46] 2026-01-13 21:47:46,776 [wrapper] Pilot exit status: 0
[2026-01-13 16:47:46] 2026-01-13 21:47:46,792 [wrapper] pandaids: 6969130871
[2026-01-13 16:47:46] 2026-01-13 21:47:46,834 [wrapper] cleanup supervisor_pilot 31948 15813
[2026-01-13 16:47:46] 2026-01-13 21:47:46,838 [wrapper] Test setup, not cleaning
[2026-01-13 16:47:46] 2026-01-13 21:47:46,842 [wrapper] apfmon messages muted
[2026-01-13 16:47:46] 2026-01-13 21:47:46,845 [wrapper] ==== wrapper stdout END ====
[2026-01-13 16:47:46] 2026-01-13 21:47:46,849 [wrapper] ==== wrapper stderr END ====
[2026-01-13 16:47:46]  *** Error codes and diagnostics ***
[2026-01-13 16:47:46]     "exeErrorCode": 0,
[2026-01-13 16:47:46]     "exeErrorDiag": "",
[2026-01-13 16:47:46]     "pilotErrorCode": 0,
[2026-01-13 16:47:46]     "pilotErrorDiag": "",
[2026-01-13 16:47:46]  *** Listing of results directory ***
[2026-01-13 16:47:46] total 594984
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 15:10 pilot3.tar.gz
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 15:11 queuedata.json
[2026-01-13 16:47:46] -rwx------ 1 boincer umatlas     36322 Jan 13 15:12 runpilot2-wrapper.sh
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas       100 Jan 13 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 16:47:46] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 15:13 run_atlas
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas       105 Jan 13 15:13 job.xml
[2026-01-13 16:47:46] -rw-r--r-- 2 boincer umatlas 317920490 Jan 13 15:13 EVNT.48213067._000003.pool.root.1
[2026-01-13 16:47:46] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 15:13 start_atlas.sh
[2026-01-13 16:47:46] drwxrwx--x 2 boincer umatlas      4096 Jan 13 15:13 shared
[2026-01-13 16:47:46] -rw-r--r-- 2 boincer umatlas    592414 Jan 13 15:13 input.tar.gz
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas         0 Jan 13 15:13 boinc_lockfile
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas      2635 Jan 13 15:14 pandaJob.out
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas        57 Jan 13 15:14 setup.sh.local
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas    997226 Jan 13 15:14 agis_schedconf.cvmfs.json
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas   1516246 Jan 13 15:14 agis_ddmendpoints.agis.ALL.json
[2026-01-13 16:47:46] drwx------ 5 boincer umatlas      4096 Jan 13 15:14 pilot3
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas      5954 Jan 13 16:45 init_data.xml
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas 284895366 Jan 13 16:46 HITS.48213070._000074.pool.root.1
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas       529 Jan 13 16:46 boinc_task_state.xml
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas      1047 Jan 13 16:47 memory_monitor_summary.json
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas    460494 Jan 13 16:47 log.48213070._000074.job.log.tgz.1
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas      7841 Jan 13 16:47 heartbeat.json
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 16:47 boinc_mmap_file
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas        27 Jan 13 16:47 wrapper_checkpoint.txt
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas        95 Jan 13 16:47 pilot_heartbeat.json
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas       815 Jan 13 16:47 pilotlog.txt
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas    800172 Jan 13 16:47 log.48213070._000074.job.log.1
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas       357 Jan 13 16:47 output.list
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas       620 Jan 13 16:47 runtime_log
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas   1280000 Jan 13 16:47 result.tar.gz
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas       660 Jan 13 16:47 Ty3LDmHwzz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG2nKDmbc0lFo.diag
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas      9344 Jan 13 16:47 runtime_log.err
[2026-01-13 16:47:46] -rw-r--r-- 1 boincer umatlas     21927 Jan 13 16:47 stderr.txt
[2026-01-13 16:47:46] HITS file was successfully produced:
[2026-01-13 16:47:46] -rw------- 1 boincer umatlas 284895366 Jan 13 16:46 shared/HITS.pool.root.1
[2026-01-13 16:47:46]  *** Contents of shared directory: ***
[2026-01-13 16:47:47] total 590548
[2026-01-13 16:47:47] -rw-r--r-- 2 boincer umatlas 317920490 Jan 13 15:13 ATLAS.root_0
[2026-01-13 16:47:47] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 15:13 start_atlas.sh
[2026-01-13 16:47:47] -rw-r--r-- 2 boincer umatlas    592414 Jan 13 15:13 input.tar.gz
[2026-01-13 16:47:47] -rw------- 1 boincer umatlas 284895366 Jan 13 16:46 HITS.pool.root.1
[2026-01-13 16:47:47] -rw------- 1 boincer umatlas   1280000 Jan 13 16:47 result.tar.gz
16:47:48 (11706): run_atlas exited; CPU time 61003.854661
16:47:48 (11706): called boinc_finish(0)

</stderr_txt>
]]>

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