Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:47:00 (25325): wrapper (7.7.26015): starting
13:47:00 (25325): wrapper: running run_atlas (--nthreads 12)
[2026-01-13 13:47:00] Arguments: --nthreads 12
[2026-01-13 13:47:00] Threads: 12
[2026-01-13 13:47:00] Checking for CVMFS
[2026-01-13 13:47:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 13:47:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 13:47:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 13:47:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 13:47:01] 2.11.2.0 3165 142801 104252 155098 2 1 12133281 20275200 1 130560 0 51984285 99.886 8542181 38776 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 13:47:01] CVMFS is ok
[2026-01-13 13:47:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 13:47:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 13:47:01] Further information can be found at the LHC@home message board.
[2026-01-13 13:47:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 13:47:01] Checking for apptainer binary...
[2026-01-13 13:47:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 13:47:01] Running /usr/bin/apptainer --version
[2026-01-13 13:47:01] apptainer version 1.3.2-1.el7
[2026-01-13 13:47:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 13:47:02] c-115-40.aglt2.org
[2026-01-13 13:47:02] apptainer works
[2026-01-13 13:47:02] Set ATHENA_PROC_NUMBER=12
[2026-01-13 13:47:02] Set ATHENA_CORE_NUMBER=12
[2026-01-13 13:47:02] Starting ATLAS job with PandaID=6969082318
[2026-01-13 13:47:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 14:18:47]  *** The last 200 lines of the pilot log: ***
[2026-01-13 14:18:47]  protocol_id=None
[2026-01-13 14:18:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-13 14:18:47]  replicas=None
[2026-01-13 14:18:47]  scope=mc16_13TeV
[2026-01-13 14:18:47]  status=None
[2026-01-13 14:18:47]  status_code=0
[2026-01-13 14:18:47]  storage_token=
[2026-01-13 14:18:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6969082318/log.47962010._003414.job.log.tgz.1
[2026-01-13 14:18:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/7a/5d/log.47962010._003414.job.log.tgz.1
[2026-01-13 14:18:47]  workdir=None
[2026-01-13 14:18:47] ]
[2026-01-13 14:18:47] 2026-01-13 19:18:09,435 | INFO     | transferring file log.47962010._003414.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6969082318/log.47962010._003414.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-13 14:18:47] 2026-01-13 19:18:09,436 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6969082318/log.47962010._003414.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003414.job
[2026-01-13 14:18:47] 2026-01-13 19:18:09,457 | INFO     | adding to output.list: log.47962010._003414.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/7a/5d/log.47962010._003414.job.log.tgz.
[2026-01-13 14:18:47] 2026-01-13 19:18:09,458 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-13 14:18:47] 2026-01-13 19:18:09,458 | INFO     | summary of transferred files:
[2026-01-13 14:18:47] 2026-01-13 19:18:09,459 | INFO     |  -- lfn=log.47962010._003414.job.log.tgz.1, status_code=0, status=transferred
[2026-01-13 14:18:47] 2026-01-13 19:18:09,459 | INFO     | stage-out finished correctly
[2026-01-13 14:18:47] 2026-01-13 19:18:09,533 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-13 14:18:47] 2026-01-13 19:18:09,604 | INFO     | job 6969082318 has state=finished
[2026-01-13 14:18:47] 2026-01-13 19:18:09,604 | INFO     | preparing for final server update for job 6969082318 in state='finished'
[2026-01-13 14:18:47] 2026-01-13 19:18:09,605 | INFO     | this job has now completed (state=finished)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,605 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,605 | INFO     | log transfer has been attempted: DONE
[2026-01-13 14:18:47] 2026-01-13 19:18:09,605 | INFO     | job 6969082318 has finished - writing final server update
[2026-01-13 14:18:47] 2026-01-13 19:18:09,606 | INFO     | total number of processed events: 50 (read)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,607 | INFO     | executing command: lscpu
[2026-01-13 14:18:47] 2026-01-13 19:18:09,612 | INFO     | time since job start (1851s) is within the limit (349056.0s)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,630 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 14:18:47] 2026-01-13 19:18:09,705 | WARNING  | process 3610 can no longer be monitored (due to stat problems) - aborting
[2026-01-13 14:18:47] 2026-01-13 19:18:09,705 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969082318/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,706 | INFO     | reaping zombies for max 20 seconds
[2026-01-13 14:18:47] 2026-01-13 19:18:09,716 | INFO     | checking for looping job (in state=finished)
[2026-01-13 14:18:47] 2026-01-13 19:18:09,717 | INFO     | using looping job limit: 7200 s
[2026-01-13 14:18:47] 2026-01-13 19:18:09,803 | INFO     | number of running child processes to parent process 3610: 1
[2026-01-13 14:18:47] 2026-01-13 19:18:09,803 | INFO     | maximum number of monitored processes: 18
[2026-01-13 14:18:47] 2026-01-13 19:18:11,617 | INFO     | time since job start (1853s) is within the limit (349056.0s)
[2026-01-13 14:18:47] 2026-01-13 19:18:12,307 | INFO     | monitor loop #145: job 0:6969082318 is in state 'finished'
[2026-01-13 14:18:47] 2026-01-13 19:18:12,307 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 14:18:47] 2026-01-13 19:18:13,622 | INFO     | time since job start (1855s) is within the limit (349056.0s)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,264 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-13 14:18:47] 2026-01-13 19:18:14,268 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2026-01-13 14:18:47] 2026-01-13 19:18:14,270 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6969082318/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,271 | INFO     | extracted standard info from prmon json
[2026-01-13 14:18:47] 2026-01-13 19:18:14,271 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 14:18:47] 2026-01-13 19:18:14,272 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 14:18:47] 2026-01-13 19:18:14,273 | INFO     | fitting pss+swap vs Time
[2026-01-13 14:18:47] 2026-01-13 19:18:14,273 | INFO     | sum of square deviations: 3766507.8260869575
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | sum of deviations: -1749113521.0869565
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | mean x: 1768331044.0869565
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | mean y: 3486352.0434782607
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | intersect: 821191674930.3358
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | chi2: 0.27819880917069534
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | current memory leak: -464.39 B/s (using 23 data points, chi2=0.28)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,274 | INFO     | could have reported an average CPU frequency of 1760 MHz (5 samples)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | ..............................
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . Timing measurements:
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . get job = 0 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . initial setup = 2 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . payload setup = 8 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . stage-in = 0 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . payload execution = 1822 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . stage-out = 0 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | . log creation = 0 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,275 | INFO     | ..............................
[2026-01-13 14:18:47] 2026-01-13 19:18:14,351 | INFO     | 
[2026-01-13 14:18:47] 2026-01-13 19:18:14,351 | INFO     | job summary report
[2026-01-13 14:18:47] 2026-01-13 19:18:14,351 | INFO     | --------------------------------------------------
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | PanDA job id: 6969082318
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | task id: 47962010
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | errors: (none)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | pilot state: finished 
[2026-01-13 14:18:47] 2026-01-13 19:18:14,352 | INFO     | transexitcode: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | exeerrorcode: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | exeerrordiag: 
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | exitcode: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | exitmsg: OK
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | cpuconsumptiontime: 16290 s
[2026-01-13 14:18:47] 2026-01-13 19:18:14,353 | INFO     | nevents: 50
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | neventsw: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | pid: 3610
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | pgrp: 3610
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | corecount: 12
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | event service: False
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | sizes: {0: 2284386, 1: 2284641, 6: 2284903, 12: 2284931, 1834: 2310618, 1835: 2319796, 1840: 2320018}
[2026-01-13 14:18:47] 2026-01-13 19:18:14,354 | INFO     | --------------------------------------------------
[2026-01-13 14:18:47] 2026-01-13 19:18:14,355 | INFO     | 
[2026-01-13 14:18:47] 2026-01-13 19:18:14,355 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 14:18:47] 2026-01-13 19:18:14,378 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,378 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,378 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,378 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 14:18:47] 2026-01-13 19:18:14,381 | INFO     | job 6969082318 has completed (purged errors)
[2026-01-13 14:18:47] 2026-01-13 19:18:14,382 | INFO     | overall cleanup function is called
[2026-01-13 14:18:47] 2026-01-13 19:18:15,396 | INFO     | --- collectZombieJob: --- 10, [3610]
[2026-01-13 14:18:47] 2026-01-13 19:18:15,397 | INFO     | zombie collector waiting for pid 3610
[2026-01-13 14:18:47] 2026-01-13 19:18:15,397 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 14:18:47] 2026-01-13 19:18:15,397 | INFO     | collected zombie processes
[2026-01-13 14:18:47] 2026-01-13 19:18:15,397 | INFO     | will attempt to kill all subprocesses of pid=3610
[2026-01-13 14:18:47] 2026-01-13 19:18:15,482 | INFO     | process IDs to be killed: [3610] (in reverse order)
[2026-01-13 14:18:47] 2026-01-13 19:18:15,535 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 14:18:47] 2026-01-13 19:18:15,535 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 14:18:47] 2026-01-13 19:18:15,539 | INFO     | did not find any defunct processes belonging to 3610
[2026-01-13 14:18:47] 2026-01-13 19:18:15,542 | INFO     | did not find any defunct processes belonging to 3610
[2026-01-13 14:18:47] 2026-01-13 19:18:15,543 | INFO     | ready for new job
[2026-01-13 14:18:47] 2026-01-13 19:18:15,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 14:18:47] 2026-01-13 19:18:15,544 | INFO     | ***************************************
[2026-01-13 14:18:47] 2026-01-13 19:18:15,544 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 14:18:47] 2026-01-13 19:18:15,544 | INFO     | ***************************************
[2026-01-13 14:18:47] 2026-01-13 19:18:15,544 | INFO     | 
[2026-01-13 14:18:47] 2026-01-13 19:18:15,545 | INFO     | architecture information:
[2026-01-13 14:18:47] 2026-01-13 19:18:15,546 | INFO     | executing command: cat /etc/os-release
[2026-01-13 14:18:47] 2026-01-13 19:18:15,560 | INFO     | cat /etc/os-release:
[2026-01-13 14:18:47] NAME="CentOS Linux"
[2026-01-13 14:18:47] VERSION="7 (Core)"
[2026-01-13 14:18:47] ID="centos"
[2026-01-13 14:18:47] ID_LIKE="rhel fedora"
[2026-01-13 14:18:47] VERSION_ID="7"
[2026-01-13 14:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 14:18:47] ANSI_COLOR="0;31"
[2026-01-13 14:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 14:18:47] HOME_URL="https://www.centos.org/"
[2026-01-13 14:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 14:18:47] 
[2026-01-13 14:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 14:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 14:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 14:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 14:18:47] 
[2026-01-13 14:18:47] 2026-01-13 19:18:15,560 | INFO     | ***************************************
[2026-01-13 14:18:47] 2026-01-13 19:18:16,063 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 14:18:47] 2026-01-13 19:18:16,081 | INFO     | sufficient remaining disk space (18493734912 B)
[2026-01-13 14:18:47] 2026-01-13 19:18:16,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 14:18:47] 2026-01-13 19:18:16,082 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 14:18:47] 2026-01-13 19:18:16,082 | INFO     | update_server=False
[2026-01-13 14:18:47] 2026-01-13 19:18:16,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 14:18:47] 2026-01-13 19:18:16,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 14:18:47] 2026-01-13 19:18:16,083 | INFO     | aborting loop
[2026-01-13 14:18:47] 2026-01-13 19:18:16,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 14:18:47] 2026-01-13 19:18:16,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 14:18:47] 2026-01-13 19:18:16,221 | INFO     | all data control threads have been joined
[2026-01-13 14:18:47] 2026-01-13 19:18:16,275 | INFO     | all job control threads have been joined
[2026-01-13 14:18:47] 2026-01-13 19:18:17,078 | INFO     | all payload control threads have been joined
[2026-01-13 14:18:47] 2026-01-13 19:18:17,088 | INFO     | [job] retrieve thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,088 | INFO     | [job] job monitor thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,089 | INFO     | [job] queue monitor thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,139 | INFO     | [data] copytool_in thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,222 | INFO     | [data] control thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,281 | INFO     | [job] control thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 14:18:47] 2026-01-13 19:18:17,600 | INFO     | [payload] validate_post thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:17,655 | INFO     | [job] validate thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:18,067 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:18,083 | INFO     | [payload] control thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:18,167 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:18,403 | INFO     | [payload] failed_post thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:18,532 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:19,549 | INFO     | [data] copytool_out thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:20,089 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:21,271 | INFO     | [monitor] cgroup control has ended
[2026-01-13 14:18:47] 2026-01-13 19:18:27,003 | INFO     | job.realtimelogging is not enabled
[2026-01-13 14:18:47] 2026-01-13 19:18:28,005 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 14:18:47] 2026-01-13 19:18:29,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852466468672)>', '<ExcThread(monitor, started 139851441628928)>']
[2026-01-13 14:18:47] 2026-01-13 19:18:34,967 | INFO     | all workflow threads have been joined
[2026-01-13 14:18:47] 2026-01-13 19:18:34,967 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 14:18:47] 2026-01-13 19:18:34,968 | INFO     | traces error code: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:34,968 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 14:18:47] 2026-01-13 19:18:46,820 | INFO     | PID=29512 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 14:18:47] 2026-01-13 19:18:46,821 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 14:18:47] 2026-01-13 19:18:46,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 14:18:47] 2026-01-13 19:18:46,821 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 14:18:47] 2026-01-13 19:18:46,821 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 14:18:47] 2026-01-13 19:18:46,821 | INFO     | [monitor] control thread has ended
[2026-01-13 14:18:47] 2026-01-13 19:18:46,898 [wrapper] ==== pilot stdout END ====
[2026-01-13 14:18:47] 2026-01-13 19:18:46,901 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 14:18:47] 2026-01-13 19:18:46,905 [wrapper] pilotpid: 29512
[2026-01-13 14:18:47] 2026-01-13 19:18:46,909 [wrapper] Pilot exit status: 0
[2026-01-13 14:18:47] 2026-01-13 19:18:46,928 [wrapper] pandaids: 6969082318
[2026-01-13 14:18:47] 2026-01-13 19:18:46,970 [wrapper] cleanup supervisor_pilot 20329 29513
[2026-01-13 14:18:47] 2026-01-13 19:18:46,974 [wrapper] Test setup, not cleaning
[2026-01-13 14:18:47] 2026-01-13 19:18:46,977 [wrapper] apfmon messages muted
[2026-01-13 14:18:47] 2026-01-13 19:18:46,981 [wrapper] ==== wrapper stdout END ====
[2026-01-13 14:18:47] 2026-01-13 19:18:46,985 [wrapper] ==== wrapper stderr END ====
[2026-01-13 14:18:47]  *** Error codes and diagnostics ***
[2026-01-13 14:18:47]     "exeErrorCode": 0,
[2026-01-13 14:18:47]     "exeErrorDiag": "",
[2026-01-13 14:18:47]     "pilotErrorCode": 0,
[2026-01-13 14:18:47]     "pilotErrorDiag": "",
[2026-01-13 14:18:47]  *** Listing of results directory ***
[2026-01-13 14:18:47] total 432724
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas    579449 Jan 13 13:14 pilot3.tar.gz
[2026-01-13 14:18:47] -rwx------ 1 boincer umatlas     36322 Jan 13 13:46 runpilot2-wrapper.sh
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas      5112 Jan 13 13:46 queuedata.json
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas       100 Jan 13 13:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 14:18:47] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 13:46 run_atlas
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas       105 Jan 13 13:46 job.xml
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas 392017497 Jan 13 13:47 EVNT.47962006._000005.pool.root.1
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 13:47 start_atlas.sh
[2026-01-13 14:18:47] drwxrwx--x 2 boincer umatlas      4096 Jan 13 13:47 shared
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas    592610 Jan 13 13:47 input.tar.gz
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas         0 Jan 13 13:47 boinc_lockfile
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas      2886 Jan 13 13:47 pandaJob.out
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas        57 Jan 13 13:47 setup.sh.local
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas    997234 Jan 13 13:47 agis_schedconf.cvmfs.json
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas   1516246 Jan 13 13:47 agis_ddmendpoints.agis.ALL.json
[2026-01-13 14:18:47] drwx------ 5 boincer umatlas      4096 Jan 13 13:47 pilot3
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas       529 Jan 13 14:10 boinc_task_state.xml
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas      5954 Jan 13 14:12 init_data.xml
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas  43337938 Jan 13 14:17 HITS.47962010._003414.pool.root.1
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas      1048 Jan 13 14:18 memory_monitor_summary.json
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas   1601863 Jan 13 14:18 log.47962010._003414.job.log.tgz.1
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas      8615 Jan 13 14:18 heartbeat.json
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 14:18 boinc_mmap_file
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas        27 Jan 13 14:18 wrapper_checkpoint.txt
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas        95 Jan 13 14:18 pilot_heartbeat.json
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas       745 Jan 13 14:18 pilotlog.txt
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas    312871 Jan 13 14:18 log.47962010._003414.job.log.1
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas       353 Jan 13 14:18 output.list
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas       620 Jan 13 14:18 runtime_log
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas   1935360 Jan 13 14:18 result.tar.gz
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas      9344 Jan 13 14:18 runtime_log.err
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas       659 Jan 13 14:18 b1NODmPayz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm26hKDmCMbeTn.diag
[2026-01-13 14:18:47] -rw-r--r-- 1 boincer umatlas     21793 Jan 13 14:18 stderr.txt
[2026-01-13 14:18:47] HITS file was successfully produced:
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas 43337938 Jan 13 14:17 shared/HITS.pool.root.1
[2026-01-13 14:18:47]  *** Contents of shared directory: ***
[2026-01-13 14:18:47] total 427644
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas 392017497 Jan 13 13:47 ATLAS.root_0
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 13:47 start_atlas.sh
[2026-01-13 14:18:47] -rw-r--r-- 2 boincer umatlas    592610 Jan 13 13:47 input.tar.gz
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas  43337938 Jan 13 14:17 HITS.pool.root.1
[2026-01-13 14:18:47] -rw------- 1 boincer umatlas   1935360 Jan 13 14:18 result.tar.gz
14:18:48 (25325): run_atlas exited; CPU time 16086.195224
14:18:48 (25325): called boinc_finish(0)

</stderr_txt>
]]>

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