Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:55:10 (539914): wrapper (7.7.26015): starting
11:55:10 (539914): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 11:55:10] Arguments: --nthreads 8
[2026-01-13 11:55:10] Threads: 8
[2026-01-13 11:55:10] Checking for CVMFS
[2026-01-13 11:55:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 11:55:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 11:55:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 11:55:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 11:55:12] 2.13.3.0 11959 99438 424564 155095 1 740 24908360 32935936 33285 16776704 0 377863507 99.474 501334315 33921 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-13 11:55:12] CVMFS is ok
[2026-01-13 11:55:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 11:55:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 11:55:12] Further information can be found at the LHC@home message board.
[2026-01-13 11:55:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 11:55:12] Checking for apptainer binary...
[2026-01-13 11:55:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 11:55:12] Running /usr/bin/apptainer --version
[2026-01-13 11:55:12] apptainer version 1.4.5-2.el9
[2026-01-13 11:55:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 11:55:13] c6-12-27-3.aglt2.org
[2026-01-13 11:55:13] apptainer works
[2026-01-13 11:55:13] Set ATHENA_PROC_NUMBER=8
[2026-01-13 11:55:13] Set ATHENA_CORE_NUMBER=8
[2026-01-13 11:55:13] Starting ATLAS job with PandaID=6968661678
[2026-01-13 11:55:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 00:58:20]  *** The last 200 lines of the pilot log: ***
[2026-01-14 00:58:20] 2026-01-14 05:57:41,508 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2738.544281249999
[2026-01-14 00:58:20] 2026-01-14 05:57:41,561 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6968661678/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 00:58:20] 2026-01-14 05:57:41,562 | INFO     | extracted standard info from prmon json
[2026-01-14 00:58:20] 2026-01-14 05:57:41,562 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 00:58:20] 2026-01-14 05:57:41,562 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 00:58:20] 2026-01-14 05:57:41,562 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 00:58:20] 2026-01-14 05:57:41,562 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 00:58:20] 2026-01-14 05:57:41,650 | INFO     | fitting pss+swap vs Time
[2026-01-14 00:58:20] 2026-01-14 05:57:41,665 | INFO     | sum of square deviations: 139370451547.36804
[2026-01-14 00:58:20] 2026-01-14 05:57:41,723 | INFO     | sum of deviations: 362042435841.07227
[2026-01-14 00:58:20] 2026-01-14 05:57:41,724 | INFO     | mean x: 1768346868.9712794
[2026-01-14 00:58:20] 2026-01-14 05:57:41,724 | INFO     | mean y: 2578706.139686684
[2026-01-14 00:58:20] 2026-01-14 05:57:41,724 | INFO     | intersect: -4591053593.578479
[2026-01-14 00:58:20] 2026-01-14 05:57:41,725 | INFO     | chi2: 5.325315016088585
[2026-01-14 00:58:20] 2026-01-14 05:57:41,738 | INFO     | sum of square deviations: 136659050431.585
[2026-01-14 00:58:20] 2026-01-14 05:57:41,775 | INFO     | sum of deviations: 521480642173.34534
[2026-01-14 00:58:20] 2026-01-14 05:57:41,775 | INFO     | mean x: 1768346716.4704337
[2026-01-14 00:58:20] 2026-01-14 05:57:41,775 | INFO     | mean y: 2587650.4375821287
[2026-01-14 00:58:20] 2026-01-14 05:57:41,775 | INFO     | intersect: -6745290213.325158
[2026-01-14 00:58:20] 2026-01-14 05:57:41,776 | INFO     | chi2: 2.9642758614920504
[2026-01-14 00:58:20] 2026-01-14 05:57:41,776 | INFO     | current chi2=2.9642758614920504 (change=44.336140631370675 %)
[2026-01-14 00:58:20] 2026-01-14 05:57:41,777 | INFO     | sum of square deviations: 133983137200.41652
[2026-01-14 00:58:20] 2026-01-14 05:57:41,848 | INFO     | sum of deviations: 520915593845.94476
[2026-01-14 00:58:20] 2026-01-14 05:57:41,849 | INFO     | mean x: 1768346563.9722223
[2026-01-14 00:58:20] 2026-01-14 05:57:41,849 | INFO     | mean y: 2587618.2354497355
[2026-01-14 00:58:20] 2026-01-14 05:57:41,849 | INFO     | intersect: -6872600705.793154
[2026-01-14 00:58:20] 2026-01-14 05:57:41,850 | INFO     | chi2: 2.9612485283048358
[2026-01-14 00:58:20] 2026-01-14 05:57:41,850 | INFO     | current chi2=2.9612485283048358 (change=0.10212724215521587 %)
[2026-01-14 00:58:20] 2026-01-14 05:57:41,850 | INFO     | right removable region: 755
[2026-01-14 00:58:20] 2026-01-14 05:57:41,851 | INFO     | sum of square deviations: 136658969673.75002
[2026-01-14 00:58:20] 2026-01-14 05:57:41,911 | INFO     | sum of deviations: 174603998024.7229
[2026-01-14 00:58:20] 2026-01-14 05:57:41,924 | INFO     | mean x: 1768347021.4743757
[2026-01-14 00:58:20] 2026-01-14 05:57:41,924 | INFO     | mean y: 2589231.6268068333
[2026-01-14 00:58:20] 2026-01-14 05:57:41,924 | INFO     | intersect: -2256760890.6641006
[2026-01-14 00:58:20] 2026-01-14 05:57:41,925 | INFO     | chi2: 3.0265768997090836
[2026-01-14 00:58:20] 2026-01-14 05:57:41,925 | INFO     | current chi2=3.0265768997090836 (change=43.16623729177832 %)
[2026-01-14 00:58:20] 2026-01-14 05:57:41,926 | INFO     | sum of square deviations: 133982883812.6183
[2026-01-14 00:58:20] 2026-01-14 05:57:41,986 | INFO     | sum of deviations: 123913929229.8901
[2026-01-14 00:58:20] 2026-01-14 05:57:41,986 | INFO     | mean x: 1768347173.9775133
[2026-01-14 00:58:20] 2026-01-14 05:57:41,986 | INFO     | mean y: 2592120.228835979
[2026-01-14 00:58:20] 2026-01-14 05:57:41,986 | INFO     | intersect: -1632861904.4552414
[2026-01-14 00:58:20] 2026-01-14 05:57:41,999 | INFO     | chi2: 2.9028014349750606
[2026-01-14 00:58:20] 2026-01-14 05:57:41,999 | INFO     | current chi2=2.9028014349750606 (change=4.089619026231264 %)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,000 | INFO     | left removable region: 20
[2026-01-14 00:58:20] 2026-01-14 05:57:42,001 | INFO     | sum of square deviations: 123124991161.53789
[2026-01-14 00:58:20] 2026-01-14 05:57:42,083 | INFO     | sum of deviations: 217787318127.49655
[2026-01-14 00:58:20] 2026-01-14 05:57:42,083 | INFO     | mean x: 1768347143.4829931
[2026-01-14 00:58:20] 2026-01-14 05:57:42,083 | INFO     | mean y: 2605310.719727891
[2026-01-14 00:58:20] 2026-01-14 05:57:42,083 | INFO     | intersect: -3125302177.958219
[2026-01-14 00:58:20] 2026-01-14 05:57:42,084 | INFO     | chi2: 0.40318977157805386
[2026-01-14 00:58:20] 2026-01-14 05:57:42,085 | INFO     | current memory leak: 1.77 B/s (using 735 data points, chi2=0.40)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,085 | INFO     | could have reported an average CPU frequency of 2708 MHz (29 samples)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | ..............................
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . Timing measurements:
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . get job = 0 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . initial setup = 5 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . payload setup = 49 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . stage-in = 0 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . payload execution = 46702 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,094 | INFO     | . stage-out = 7 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,095 | INFO     | . log creation = 0 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,095 | INFO     | ..............................
[2026-01-14 00:58:20] 2026-01-14 05:57:42,524 | INFO     | 
[2026-01-14 00:58:20] 2026-01-14 05:57:42,524 | INFO     | job summary report
[2026-01-14 00:58:20] 2026-01-14 05:57:42,524 | INFO     | --------------------------------------------------
[2026-01-14 00:58:20] 2026-01-14 05:57:42,524 | INFO     | PanDA job id: 6968661678
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | task id: 48188528
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | errors: (none)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | pilot state: finished 
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | transexitcode: 0
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | exeerrorcode: 0
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | exeerrordiag: 
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | exitcode: 0
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | exitmsg: OK
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | cpuconsumptiontime: 63173 s
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | nevents: 400
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | neventsw: 0
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | pid: 575473
[2026-01-14 00:58:20] 2026-01-14 05:57:42,525 | INFO     | pgrp: 575473
[2026-01-14 00:58:20] 2026-01-14 05:57:42,526 | INFO     | corecount: 8
[2026-01-14 00:58:20] 2026-01-14 05:57:42,530 | INFO     | event service: False
[2026-01-14 00:58:20] 2026-01-14 05:57:42,530 | INFO     | sizes: {0: 2283967, 1: 2284166, 12: 2284166, 23: 2284194, 30: 2284484, 34: 2284512, 46756: 2329864, 46757: 2329863, 46767: 2338917, 46768: 2338973, 46804: 2339167}
[2026-01-14 00:58:20] 2026-01-14 05:57:42,530 | INFO     | --------------------------------------------------
[2026-01-14 00:58:20] 2026-01-14 05:57:42,530 | INFO     | 
[2026-01-14 00:58:20] 2026-01-14 05:57:42,530 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-14 00:58:20] 2026-01-14 05:57:42,588 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,588 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,588 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,588 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,589 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,590 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,590 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,590 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 00:58:20] 2026-01-14 05:57:42,590 | INFO     | job 6968661678 has completed (purged errors)
[2026-01-14 00:58:20] 2026-01-14 05:57:42,590 | INFO     | overall cleanup function is called
[2026-01-14 00:58:20] 2026-01-14 05:57:43,733 | INFO     | --- collectZombieJob: --- 10, [575473]
[2026-01-14 00:58:20] 2026-01-14 05:57:43,733 | INFO     | zombie collector waiting for pid 575473
[2026-01-14 00:58:20] 2026-01-14 05:57:43,733 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 00:58:20] 2026-01-14 05:57:43,733 | INFO     | collected zombie processes
[2026-01-14 00:58:20] 2026-01-14 05:57:43,733 | INFO     | will attempt to kill all subprocesses of pid=575473
[2026-01-14 00:58:20] 2026-01-14 05:57:45,605 | INFO     | PID=548602 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 00:58:20] 2026-01-14 05:57:45,605 | INFO     | .. there are 30 such processes running
[2026-01-14 00:58:20] 2026-01-14 05:57:47,605 | INFO     | process IDs to be killed: [575473] (in reverse order)
[2026-01-14 00:58:20] 2026-01-14 05:57:47,788 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 00:58:20] 2026-01-14 05:57:47,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 00:58:20] 2026-01-14 05:57:47,827 | INFO     | did not find any defunct processes belonging to 575473
[2026-01-14 00:58:20] 2026-01-14 05:57:47,865 | INFO     | did not find any defunct processes belonging to 575473
[2026-01-14 00:58:20] 2026-01-14 05:57:47,865 | INFO     | ready for new job
[2026-01-14 00:58:20] 2026-01-14 05:57:47,865 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 00:58:20] 2026-01-14 05:57:47,873 | INFO     | ***************************************
[2026-01-14 00:58:20] 2026-01-14 05:57:47,873 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 00:58:20] 2026-01-14 05:57:47,873 | INFO     | ***************************************
[2026-01-14 00:58:20] 2026-01-14 05:57:47,873 | INFO     | 
[2026-01-14 00:58:20] 2026-01-14 05:57:47,887 | INFO     | architecture information:
[2026-01-14 00:58:20] 2026-01-14 05:57:47,888 | INFO     | executing command: cat /etc/os-release
[2026-01-14 00:58:20] 2026-01-14 05:57:47,968 | INFO     | cat /etc/os-release:
[2026-01-14 00:58:20] NAME="CentOS Linux"
[2026-01-14 00:58:20] VERSION="7 (Core)"
[2026-01-14 00:58:20] ID="centos"
[2026-01-14 00:58:20] ID_LIKE="rhel fedora"
[2026-01-14 00:58:20] VERSION_ID="7"
[2026-01-14 00:58:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 00:58:20] ANSI_COLOR="0;31"
[2026-01-14 00:58:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 00:58:20] HOME_URL="https://www.centos.org/"
[2026-01-14 00:58:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 00:58:20] 
[2026-01-14 00:58:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 00:58:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 00:58:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 00:58:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 00:58:20] 
[2026-01-14 00:58:20] 2026-01-14 05:57:47,968 | INFO     | ***************************************
[2026-01-14 00:58:20] 2026-01-14 05:57:48,472 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-14 00:58:20] 2026-01-14 05:57:48,651 | INFO     | sufficient remaining disk space (84938850304 B)
[2026-01-14 00:58:20] 2026-01-14 05:57:48,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | INFO     | update_server=False
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 00:58:20] 2026-01-14 05:57:48,652 | INFO     | aborting loop
[2026-01-14 00:58:20] 2026-01-14 05:57:48,834 | INFO     | all payload control threads have been joined
[2026-01-14 00:58:20] 2026-01-14 05:57:49,584 | INFO     | all data control threads have been joined
[2026-01-14 00:58:20] 2026-01-14 05:57:49,658 | INFO     | [job] retrieve thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,658 | INFO     | [job] queue monitor thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,659 | INFO     | [job] job monitor thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,704 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,704 | INFO     | [data] copytool_in thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,798 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,805 | INFO     | [payload] validate_post thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,840 | INFO     | [payload] control thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,943 | INFO     | [job] validate thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,949 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:49,997 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:50,040 | INFO     | all job control threads have been joined
[2026-01-14 00:58:20] 2026-01-14 05:57:50,157 | INFO     | [payload] failed_post thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:50,605 | INFO     | [data] control thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:50,659 | INFO     | [data] copytool_out thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:51,046 | INFO     | [job] control thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:52,681 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 00:58:20] 2026-01-14 05:57:54,106 | INFO     | [monitor] cgroup control has ended
[2026-01-14 00:58:20] 2026-01-14 05:57:56,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940680546112)>', '<ExcThread(monitor, started 139939949827840)>']
[2026-01-14 00:58:20] 2026-01-14 05:58:01,206 | INFO     | all workflow threads have been joined
[2026-01-14 00:58:20] 2026-01-14 05:58:01,208 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 00:58:20] 2026-01-14 05:58:01,208 | INFO     | traces error code: 0
[2026-01-14 00:58:20] 2026-01-14 05:58:01,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 00:58:20] 2026-01-14 05:58:19,303 | INFO     | PID=548602 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 00:58:20] 2026-01-14 05:58:19,303 | INFO     | .. there are 30 such processes running
[2026-01-14 00:58:20] 2026-01-14 05:58:19,308 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 00:58:20] 2026-01-14 05:58:19,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 00:58:20] 2026-01-14 05:58:19,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 00:58:20] 2026-01-14 05:58:19,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 00:58:20] 2026-01-14 05:58:19,309 | CRITICAL | thread 'MainThread' is not alive
[2026-01-14 00:58:20] 2026-01-14 05:58:19,309 | INFO     | [monitor] control thread has ended
[2026-01-14 00:58:20] 2026-01-14 05:58:19,598 [wrapper] ==== pilot stdout END ====
[2026-01-14 00:58:20] 2026-01-14 05:58:19,623 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 00:58:20] 2026-01-14 05:58:19,638 [wrapper] pilotpid: 548602
[2026-01-14 00:58:20] 2026-01-14 05:58:19,665 [wrapper] Pilot exit status: 0
[2026-01-14 00:58:20] 2026-01-14 05:58:19,740 [wrapper] pandaids: 6968661678
[2026-01-14 00:58:20] 2026-01-14 05:58:20,056 [wrapper] cleanup supervisor_pilot 3792406 548603
[2026-01-14 00:58:20] 2026-01-14 05:58:20,068 [wrapper] Test setup, not cleaning
[2026-01-14 00:58:20] 2026-01-14 05:58:20,083 [wrapper] apfmon messages muted
[2026-01-14 00:58:20] 2026-01-14 05:58:20,105 [wrapper] ==== wrapper stdout END ====
[2026-01-14 00:58:20] 2026-01-14 05:58:20,119 [wrapper] ==== wrapper stderr END ====
[2026-01-14 00:58:20]  *** Error codes and diagnostics ***
[2026-01-14 00:58:20]     "exeErrorCode": 0,
[2026-01-14 00:58:20]     "exeErrorDiag": "",
[2026-01-14 00:58:20]     "pilotErrorCode": 0,
[2026-01-14 00:58:20]     "pilotErrorDiag": "",
[2026-01-14 00:58:20]  *** Listing of results directory ***
[2026-01-14 00:58:20] total 603812
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas    579449 Jan 13 06:09 pilot3.tar.gz
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 07:02 queuedata.json
[2026-01-14 00:58:20] -rwx------. 1 boincer umatlas     36322 Jan 13 07:02 runpilot2-wrapper.sh
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas       100 Jan 13 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 00:58:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 11:55 run_atlas
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas       105 Jan 13 11:55 job.xml
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas 320036905 Jan 13 11:55 EVNT.48188524._000008.pool.root.1
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 11:55 start_atlas.sh
[2026-01-14 00:58:20] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 11:55 shared
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas    592415 Jan 13 11:55 input.tar.gz
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas         0 Jan 13 11:55 boinc_lockfile
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas      2642 Jan 13 11:55 pandaJob.out
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas        57 Jan 13 11:55 setup.sh.local
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas    996105 Jan 13 11:56 agis_schedconf.cvmfs.json
[2026-01-14 00:58:20] drwx------. 5 boincer umatlas      4096 Jan 13 11:56 pilot3
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas 281353833 Jan 14 00:53 HITS.48188528._000189.pool.root.1
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas       531 Jan 14 00:54 boinc_task_state.xml
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas      1044 Jan 14 00:56 memory_monitor_summary.json
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas      6879 Jan 14 00:56 init_data.xml
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas   1516246 Jan 14 00:57 agis_ddmendpoints.agis.ALL.json
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas    899167 Jan 14 00:57 log.48188528._000189.job.log.tgz.1
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas      7825 Jan 14 00:57 heartbeat.json
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas        95 Jan 14 00:58 pilot_heartbeat.json
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas       892 Jan 14 00:58 pilotlog.txt
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas      8192 Jan 14 00:58 boinc_mmap_file
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas        28 Jan 14 00:58 wrapper_checkpoint.txt
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas   5596985 Jan 14 00:58 log.48188528._000189.job.log.1
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas       357 Jan 14 00:58 output.list
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas       620 Jan 14 00:58 runtime_log
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas   6512640 Jan 14 00:58 result.tar.gz
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas       660 Jan 14 00:58 udcMDmZHsz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmo6hKDmrzpvMn.diag
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas      9353 Jan 14 00:58 runtime_log.err
[2026-01-14 00:58:20] -rw-r--r--. 1 boincer umatlas     21301 Jan 14 00:58 stderr.txt
[2026-01-14 00:58:20] HITS file was successfully produced:
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas 281353833 Jan 14 00:53 shared/HITS.pool.root.1
[2026-01-14 00:58:20]  *** Contents of shared directory: ***
[2026-01-14 00:58:20] total 594264
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas 320036905 Jan 13 11:55 ATLAS.root_0
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 11:55 start_atlas.sh
[2026-01-14 00:58:20] -rw-r--r--. 2 boincer umatlas    592415 Jan 13 11:55 input.tar.gz
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas 281353833 Jan 14 00:53 HITS.pool.root.1
[2026-01-14 00:58:20] -rw-------. 1 boincer umatlas   6512640 Jan 14 00:58 result.tar.gz
00:58:21 (539914): run_atlas exited; CPU time 65493.282859
00:58:21 (539914): called boinc_finish(0)

</stderr_txt>
]]>

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