Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:29:57 (10391): wrapper (7.7.26015): starting
03:29:57 (10391): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 03:29:57] Arguments: --nthreads 8
[2026-01-13 03:29:57] Threads: 8
[2026-01-13 03:29:57] Checking for CVMFS
[2026-01-13 03:29:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 03:29:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 03:29:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 03:29:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 03:29:57] 2.11.2.0 2776 111960 91272 155082 0 1 15075271 20275201 1 130560 0 23242666 99.793 7036358 30238 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 03:29:57] CVMFS is ok
[2026-01-13 03:29:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 03:29:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 03:29:57] Further information can be found at the LHC@home message board.
[2026-01-13 03:29:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 03:29:57] Checking for apptainer binary...
[2026-01-13 03:29:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 03:29:57] Running /usr/bin/apptainer --version
[2026-01-13 03:29:57] apptainer version 1.3.2-1.el7
[2026-01-13 03:29:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 03:29:59] c-115-7.aglt2.org
[2026-01-13 03:29:59] apptainer works
[2026-01-13 03:29:59] Set ATHENA_PROC_NUMBER=8
[2026-01-13 03:29:59] Set ATHENA_CORE_NUMBER=8
[2026-01-13 03:29:59] Starting ATLAS job with PandaID=6963168828
[2026-01-13 03:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:13:25 (25325): wrapper (7.7.26015): starting
06:13:25 (25325): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 06:13:25] Arguments: --nthreads 8
[2026-01-13 06:13:25] Threads: 8
[2026-01-13 06:13:25] This job has been restarted, cleaning up previous attempt
[2026-01-13 06:13:25] Checking for CVMFS
[2026-01-13 06:13:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 06:13:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 06:13:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 06:13:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 06:13:26] 2.11.2.0 2776 112123 91740 155086 3 1 15295714 20275200 1 130560 0 23326536 99.794 7044748 30244 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 06:13:26] CVMFS is ok
[2026-01-13 06:13:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 06:13:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 06:13:26] Further information can be found at the LHC@home message board.
[2026-01-13 06:13:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 06:13:26] Checking for apptainer binary...
[2026-01-13 06:13:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 06:13:26] Running /usr/bin/apptainer --version
[2026-01-13 06:13:26] apptainer version 1.3.2-1.el7
[2026-01-13 06:13:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 06:13:27] c-115-7.aglt2.org
[2026-01-13 06:13:27] apptainer works
[2026-01-13 06:13:27] Set ATHENA_PROC_NUMBER=8
[2026-01-13 06:13:27] Set ATHENA_CORE_NUMBER=8
[2026-01-13 06:13:27] Starting ATLAS job with PandaID=6963168828
[2026-01-13 06:13:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 08:51:04]  *** The last 200 lines of the pilot log: ***
[2026-01-13 08:51:04] 2026-01-13 13:50:47,195 | INFO     | mean y: 2478897.0454545454
[2026-01-13 08:51:04] 2026-01-13 13:50:47,195 | INFO     | intersect: -42948731622.6861
[2026-01-13 08:51:04] 2026-01-13 13:50:47,196 | INFO     | chi2: 1.30026137836521
[2026-01-13 08:51:04] 2026-01-13 13:50:47,196 | INFO     | sum of square deviations: 1025693650.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | sum of deviations: 26264156645.000004
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | mean x: 1768307370.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | mean y: 2477121.5033557047
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | intersect: -45277223851.77261
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | chi2: 1.3010424345457285
[2026-01-13 08:51:04] 2026-01-13 13:50:47,197 | INFO     | current chi2=1.3010424345457285 (change=-0.06006916713165834 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,198 | INFO     | right removable region: 148
[2026-01-13 08:51:04] 2026-01-13 13:50:47,198 | INFO     | sum of square deviations: 1025693650.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,198 | INFO     | sum of deviations: 6665317805.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | mean x: 1768307675.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | mean y: 2508171.302013423
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | intersect: -11488576550.628021
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | chi2: 0.0037679749503543246
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | current chi2=0.0037679749503543246 (change=99.7102140374967 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,199 | INFO     | sum of square deviations: 925859220.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,200 | INFO     | sum of deviations: 4828099278.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,200 | INFO     | mean x: 1768307827.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,200 | INFO     | mean y: 2510976.1458333335
[2026-01-13 08:51:04] 2026-01-13 13:50:47,200 | INFO     | intersect: -9218724349.586142
[2026-01-13 08:51:04] 2026-01-13 13:50:47,201 | INFO     | chi2: 0.0010483034890865685
[2026-01-13 08:51:04] 2026-01-13 13:50:47,201 | INFO     | current chi2=0.0010483034890865685 (change=72.17859718021771 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,201 | INFO     | sum of square deviations: 832722590.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | sum of deviations: 3808350779.9999995
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | mean x: 1768307980.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | mean y: 2512640.992805755
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | intersect: -8084618842.870535
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | chi2: 0.00045088050616144204
[2026-01-13 08:51:04] 2026-01-13 13:50:47,202 | INFO     | current chi2=0.00045088050616144204 (change=56.989506297044436 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,203 | INFO     | sum of square deviations: 746051197.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,203 | INFO     | sum of deviations: 3175302143.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,203 | INFO     | mean x: 1768308132.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,203 | INFO     | mean y: 2513752.6791044776
[2026-01-13 08:51:04] 2026-01-13 13:50:47,204 | INFO     | intersect: -7523662228.689429
[2026-01-13 08:51:04] 2026-01-13 13:50:47,204 | INFO     | chi2: 0.0003276906694236845
[2026-01-13 08:51:04] 2026-01-13 13:50:47,204 | INFO     | current chi2=0.0003276906694236845 (change=27.322058739361033 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,204 | INFO     | sum of square deviations: 665612480.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | sum of deviations: 2666602494.9999995
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | mean x: 1768308285.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | mean y: 2514716.496124031
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | intersect: -7081750417.339963
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | chi2: 0.00026486550860187343
[2026-01-13 08:51:04] 2026-01-13 13:50:47,205 | INFO     | current chi2=0.00026486550860187343 (change=19.17209328306565 %)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,206 | INFO     | left removable region: 50
[2026-01-13 08:51:04] 2026-01-13 13:50:47,206 | INFO     | sum of square deviations: 291817564.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,206 | INFO     | sum of deviations: 1304931154.0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,206 | INFO     | mean x: 1768308864.5
[2026-01-13 08:51:04] 2026-01-13 13:50:47,206 | INFO     | mean y: 2516326.448979592
[2026-01-13 08:51:04] 2026-01-13 13:50:47,207 | INFO     | intersect: -7904894357.12012
[2026-01-13 08:51:04] 2026-01-13 13:50:47,207 | INFO     | chi2: 0.00014102941053677266
[2026-01-13 08:51:04] 2026-01-13 13:50:47,207 | INFO     | current memory leak: 4.47 B/s (using 98 data points, chi2=0.00)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,207 | INFO     | could have reported an average CPU frequency of 2230 MHz (9 samples)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,207 | INFO     | ..............................
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . Timing measurements:
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . get job = 0 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . initial setup = 1 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . payload setup = 8 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . stage-in = 0 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . payload execution = 9382 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . stage-out = 2 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | . log creation = 0 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,208 | INFO     | ..............................
[2026-01-13 08:51:04] 2026-01-13 13:50:47,395 | INFO     | time since job start (9423s) is within the limit (349056.0s)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,440 | INFO     | 
[2026-01-13 08:51:04] 2026-01-13 13:50:47,441 | INFO     | job summary report
[2026-01-13 08:51:04] 2026-01-13 13:50:47,441 | INFO     | --------------------------------------------------
[2026-01-13 08:51:04] 2026-01-13 13:50:47,441 | INFO     | PanDA job id: 6963168828
[2026-01-13 08:51:04] 2026-01-13 13:50:47,441 | INFO     | task id: 47898826
[2026-01-13 08:51:04] 2026-01-13 13:50:47,441 | INFO     | errors: (none)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | pilot state: finished 
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | transexitcode: 0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | exeerrorcode: 0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | exeerrordiag: 
[2026-01-13 08:51:04] 2026-01-13 13:50:47,442 | INFO     | exitcode: 0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | exitmsg: OK
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | cpuconsumptiontime: 70794 s
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | nevents: 400
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | neventsw: 0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | pid: 3601
[2026-01-13 08:51:04] 2026-01-13 13:50:47,443 | INFO     | pgrp: 3601
[2026-01-13 08:51:04] 2026-01-13 13:50:47,444 | INFO     | corecount: 8
[2026-01-13 08:51:04] 2026-01-13 13:50:47,444 | INFO     | event service: False
[2026-01-13 08:51:04] 2026-01-13 13:50:47,444 | INFO     | sizes: {0: 2283971, 1: 2283971, 6: 2284261, 11: 2284289, 9395: 2312652, 9397: 2321650, 9398: 2321834, 9405: 2322092}
[2026-01-13 08:51:04] 2026-01-13 13:50:47,444 | INFO     | --------------------------------------------------
[2026-01-13 08:51:04] 2026-01-13 13:50:47,444 | INFO     | 
[2026-01-13 08:51:04] 2026-01-13 13:50:47,445 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-13 08:51:04] 2026-01-13 13:50:47,472 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,473 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,474 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,475 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,475 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 08:51:04] 2026-01-13 13:50:47,475 | INFO     | job 6963168828 has completed (purged errors)
[2026-01-13 08:51:04] 2026-01-13 13:50:47,475 | INFO     | overall cleanup function is called
[2026-01-13 08:51:04] 2026-01-13 13:50:48,483 | INFO     | --- collectZombieJob: --- 10, [3601]
[2026-01-13 08:51:04] 2026-01-13 13:50:48,484 | INFO     | zombie collector waiting for pid 3601
[2026-01-13 08:51:04] 2026-01-13 13:50:48,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 08:51:04] 2026-01-13 13:50:48,484 | INFO     | collected zombie processes
[2026-01-13 08:51:04] 2026-01-13 13:50:48,484 | INFO     | will attempt to kill all subprocesses of pid=3601
[2026-01-13 08:51:04] 2026-01-13 13:50:48,569 | INFO     | process IDs to be killed: [3601] (in reverse order)
[2026-01-13 08:51:04] 2026-01-13 13:50:48,626 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 08:51:04] 2026-01-13 13:50:48,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 08:51:04] 2026-01-13 13:50:48,631 | INFO     | did not find any defunct processes belonging to 3601
[2026-01-13 08:51:04] 2026-01-13 13:50:48,635 | INFO     | did not find any defunct processes belonging to 3601
[2026-01-13 08:51:04] 2026-01-13 13:50:48,635 | INFO     | ready for new job
[2026-01-13 08:51:04] 2026-01-13 13:50:48,635 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 08:51:04] 2026-01-13 13:50:48,638 | INFO     | ***************************************
[2026-01-13 08:51:04] 2026-01-13 13:50:48,638 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 08:51:04] 2026-01-13 13:50:48,638 | INFO     | ***************************************
[2026-01-13 08:51:04] 2026-01-13 13:50:48,638 | INFO     | 
[2026-01-13 08:51:04] 2026-01-13 13:50:48,639 | INFO     | architecture information:
[2026-01-13 08:51:04] 2026-01-13 13:50:48,640 | INFO     | executing command: cat /etc/os-release
[2026-01-13 08:51:04] 2026-01-13 13:50:48,657 | INFO     | cat /etc/os-release:
[2026-01-13 08:51:04] NAME="CentOS Linux"
[2026-01-13 08:51:04] VERSION="7 (Core)"
[2026-01-13 08:51:04] ID="centos"
[2026-01-13 08:51:04] ID_LIKE="rhel fedora"
[2026-01-13 08:51:04] VERSION_ID="7"
[2026-01-13 08:51:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 08:51:04] ANSI_COLOR="0;31"
[2026-01-13 08:51:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 08:51:04] HOME_URL="https://www.centos.org/"
[2026-01-13 08:51:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 08:51:04] 
[2026-01-13 08:51:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 08:51:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 08:51:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 08:51:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 08:51:04] 
[2026-01-13 08:51:04] 2026-01-13 13:50:48,657 | INFO     | ***************************************
[2026-01-13 08:51:04] 2026-01-13 13:50:49,161 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-13 08:51:04] 2026-01-13 13:50:49,180 | INFO     | sufficient remaining disk space (18531483648 B)
[2026-01-13 08:51:04] 2026-01-13 13:50:49,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 08:51:04] 2026-01-13 13:50:49,180 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 08:51:04] 2026-01-13 13:50:49,181 | INFO     | update_server=False
[2026-01-13 08:51:04] 2026-01-13 13:50:49,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 08:51:04] 2026-01-13 13:50:49,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 08:51:04] 2026-01-13 13:50:49,182 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-13 08:51:04] 2026-01-13 13:50:49,182 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 08:51:04] 2026-01-13 13:50:49,182 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 08:51:04] 2026-01-13 13:50:49,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 08:51:04] 2026-01-13 13:50:49,260 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 08:51:04] 2026-01-13 13:50:49,260 | INFO     | aborting loop
[2026-01-13 08:51:04] 2026-01-13 13:50:49,770 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 08:51:04] 2026-01-13 13:50:49,800 | INFO     | all payload control threads have been joined
[2026-01-13 08:51:04] 2026-01-13 13:50:49,810 | INFO     | all job control threads have been joined
[2026-01-13 08:51:04] 2026-01-13 13:50:49,885 | INFO     | all data control threads have been joined
[2026-01-13 08:51:04] 2026-01-13 13:50:50,187 | INFO     | [job] retrieve thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,187 | INFO     | [job] queue monitor thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,205 | INFO     | [job] validate thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,266 | INFO     | [job] job monitor thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,466 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,502 | INFO     | [payload] failed_post thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,585 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 08:51:04] 2026-01-13 13:50:50,665 | INFO     | [payload] validate_post thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,805 | INFO     | [payload] control thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,815 | INFO     | [job] control thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,891 | INFO     | [data] control thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,934 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:50,936 | INFO     | [data] copytool_in thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:51,140 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:51,775 | INFO     | [data] copytool_out thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:54,668 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 08:51:04] 2026-01-13 13:50:59,369 | INFO     | [monitor] cgroup control has ended
[2026-01-13 08:51:04] 2026-01-13 13:50:59,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140643190499136)>', '<ExcThread(monitor, started 140642361521920)>']
[2026-01-13 08:51:04] 2026-01-13 13:51:00,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 08:51:04] 2026-01-13 13:51:00,240 | INFO     | [monitor] control thread has ended
[2026-01-13 08:51:04] 2026-01-13 13:51:04,490 | INFO     | all workflow threads have been joined
[2026-01-13 08:51:04] 2026-01-13 13:51:04,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 08:51:04] 2026-01-13 13:51:04,490 | INFO     | traces error code: 0
[2026-01-13 08:51:04] 2026-01-13 13:51:04,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 08:51:04] 2026-01-13 13:51:04,592 [wrapper] ==== pilot stdout END ====
[2026-01-13 08:51:04] 2026-01-13 13:51:04,597 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 08:51:04] 2026-01-13 13:51:04,602 [wrapper] pilotpid: 29394
[2026-01-13 08:51:04] 2026-01-13 13:51:04,606 [wrapper] Pilot exit status: 0
[2026-01-13 08:51:04] 2026-01-13 13:51:04,625 [wrapper] pandaids: 6963168828 6963168828
[2026-01-13 08:51:04] 2026-01-13 13:51:04,667 [wrapper] cleanup supervisor_pilot  3851 29395
[2026-01-13 08:51:04] 2026-01-13 13:51:04,672 [wrapper] Test setup, not cleaning
[2026-01-13 08:51:04] 2026-01-13 13:51:04,676 [wrapper] apfmon messages muted
[2026-01-13 08:51:04] 2026-01-13 13:51:04,681 [wrapper] ==== wrapper stdout END ====
[2026-01-13 08:51:04] 2026-01-13 13:51:04,685 [wrapper] ==== wrapper stderr END ====
[2026-01-13 08:51:04]  *** Error codes and diagnostics ***
[2026-01-13 08:51:04]     "exeErrorCode": 0,
[2026-01-13 08:51:04]     "exeErrorDiag": "",
[2026-01-13 08:51:04]     "pilotErrorCode": 0,
[2026-01-13 08:51:04]     "pilotErrorDiag": "",
[2026-01-13 08:51:04]  *** Listing of results directory ***
[2026-01-13 08:51:04] total 663200
[2026-01-13 08:51:04] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-13 08:51:04] -rwx------ 1 boincer umatlas     36322 Jan  8 20:01 runpilot2-wrapper.sh
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 20:06 queuedata.json
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas       100 Jan 13 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 08:51:04] -rwxr-xr-x 1 boincer umatlas      7986 Jan 13 03:29 run_atlas
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas       105 Jan 13 03:29 job.xml
[2026-01-13 08:51:04] -rw-r--r-- 3 boincer umatlas 225412068 Jan 13 03:29 EVNT.47898824._001393.pool.root.1
[2026-01-13 08:51:04] -rw-r--r-- 3 boincer umatlas 225412068 Jan 13 03:29 ATLAS.root_0
[2026-01-13 08:51:04] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 03:29 start_atlas.sh
[2026-01-13 08:51:04] drwxrwx--x 2 boincer umatlas      4096 Jan 13 03:29 shared
[2026-01-13 08:51:04] -rw-r--r-- 2 boincer umatlas    592403 Jan 13 03:29 input.tar.gz
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas         0 Jan 13 03:29 boinc_lockfile
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas      2520 Jan 13 06:13 pandaJob.out
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas        57 Jan 13 06:13 setup.sh.local
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas    992661 Jan 13 06:13 agis_schedconf.cvmfs.json
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas        96 Jan 13 08:49 pilot_heartbeat.json
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas      5911 Jan 13 08:49 init_data.xml
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas 220959839 Jan 13 08:50 HITS.47898826._036355.pool.root.1
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas       531 Jan 13 08:50 boinc_task_state.xml
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas      1049 Jan 13 08:50 memory_monitor_summary.json
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas   1516240 Jan 13 08:50 agis_ddmendpoints.agis.ALL.json
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas    387596 Jan 13 08:50 log.47898826._036355.job.log.tgz.1
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas      7841 Jan 13 08:50 heartbeat.json
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas      8192 Jan 13 08:50 boinc_mmap_file
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas        29 Jan 13 08:50 wrapper_checkpoint.txt
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas      4552 Jan 13 08:51 pilotlog.txt
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas   1316534 Jan 13 08:51 log.47898826._036355.job.log.1
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas       357 Jan 13 08:51 output.list
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas       620 Jan 13 08:51 runtime_log
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas   1720320 Jan 13 08:51 result.tar.gz
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas      9422 Jan 13 08:51 runtime_log.err
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas       785 Jan 13 08:51 btjMDmZ3Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOngKDmdZz04m.diag
[2026-01-13 08:51:04] -rw-r--r-- 1 boincer umatlas     22972 Jan 13 08:51 stderr.txt
[2026-01-13 08:51:04] HITS file was successfully produced:
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas 220959839 Jan 13 08:50 shared/HITS.pool.root.1
[2026-01-13 08:51:04]  *** Contents of shared directory: ***
[2026-01-13 08:51:04] total 438196
[2026-01-13 08:51:04] -rw-r--r-- 3 boincer umatlas 225412068 Jan 13 03:29 ATLAS.root_0
[2026-01-13 08:51:04] -rw-r--r-- 2 boincer umatlas     15847 Jan 13 03:29 start_atlas.sh
[2026-01-13 08:51:04] -rw-r--r-- 2 boincer umatlas    592403 Jan 13 03:29 input.tar.gz
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas 220959839 Jan 13 08:50 HITS.pool.root.1
[2026-01-13 08:51:04] -rw------- 1 boincer umatlas   1720320 Jan 13 08:51 result.tar.gz
08:51:06 (25325): run_atlas exited; CPU time 70721.122873
08:51:06 (25325): called boinc_finish(0)

</stderr_txt>
]]>

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