Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:42:11 (1249677): wrapper (7.7.26015): starting
09:42:11 (1249677): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 09:42:11] Arguments: --nthreads 4
[2026-01-13 09:42:11] Threads: 4
[2026-01-13 09:42:11] Checking for CVMFS
[2026-01-13 09:42:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 09:42:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 09:42:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 09:42:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 09:42:11] 2.9.2.0 1201511 110 57632 155082 1 57 18447441 36864000 0 130560 0 130479 99.996 4124 4472 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 09:42:11] CVMFS is ok
[2026-01-13 09:42:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 09:42:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 09:42:11] Further information can be found at the LHC@home message board.
[2026-01-13 09:42:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 09:42:11] Checking for apptainer binary...
[2026-01-13 09:42:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 09:42:11] Running /usr/bin/apptainer --version
[2026-01-13 09:42:11] apptainer version 1.4.1-1.1
[2026-01-13 09:42:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 09:42:11] thA381
[2026-01-13 09:42:11] apptainer works
[2026-01-13 09:42:11] Set ATHENA_PROC_NUMBER=4
[2026-01-13 09:42:11] Set ATHENA_CORE_NUMBER=4
[2026-01-13 09:42:11] Starting ATLAS job with PandaID=6966858151
[2026-01-13 09:42:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 18:21:17]  *** The last 200 lines of the pilot log: ***
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | job 6966858151 has completed (purged errors)
[2026-01-13 18:21:17] 2026-01-13 17:20:44,721 | INFO     | overall cleanup function is called
[2026-01-13 18:21:17] 2026-01-13 17:20:45,728 | INFO     | --- collectZombieJob: --- 10, [1260719]
[2026-01-13 18:21:17] 2026-01-13 17:20:45,728 | INFO     | zombie collector waiting for pid 1260719
[2026-01-13 18:21:17] 2026-01-13 17:20:45,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 18:21:17] 2026-01-13 17:20:45,728 | INFO     | collected zombie processes
[2026-01-13 18:21:17] 2026-01-13 17:20:45,728 | INFO     | will attempt to kill all subprocesses of pid=1260719
[2026-01-13 18:21:17] 2026-01-13 17:20:45,772 | INFO     | process IDs to be killed: [1260719] (in reverse order)
[2026-01-13 18:21:17] 2026-01-13 17:20:45,806 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 18:21:17] 2026-01-13 17:20:45,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 18:21:17] 2026-01-13 17:20:45,808 | INFO     | did not find any defunct processes belonging to 1260719
[2026-01-13 18:21:17] 2026-01-13 17:20:45,809 | INFO     | did not find any defunct processes belonging to 1260719
[2026-01-13 18:21:17] 2026-01-13 17:20:45,809 | INFO     | ready for new job
[2026-01-13 18:21:17] 2026-01-13 17:20:45,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 18:21:17] 2026-01-13 17:20:45,811 | INFO     | ***************************************
[2026-01-13 18:21:17] 2026-01-13 17:20:45,811 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 18:21:17] 2026-01-13 17:20:45,811 | INFO     | ***************************************
[2026-01-13 18:21:17] 2026-01-13 17:20:45,811 | INFO     | 
[2026-01-13 18:21:17] 2026-01-13 17:20:45,812 | INFO     | architecture information:
[2026-01-13 18:21:17] 2026-01-13 17:20:45,812 | INFO     | executing command: cat /etc/os-release
[2026-01-13 18:21:17] 2026-01-13 17:20:45,826 | INFO     | cat /etc/os-release:
[2026-01-13 18:21:17] NAME="CentOS Linux"
[2026-01-13 18:21:17] VERSION="7 (Core)"
[2026-01-13 18:21:17] ID="centos"
[2026-01-13 18:21:17] ID_LIKE="rhel fedora"
[2026-01-13 18:21:17] VERSION_ID="7"
[2026-01-13 18:21:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 18:21:17] ANSI_COLOR="0;31"
[2026-01-13 18:21:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 18:21:17] HOME_URL="https://www.centos.org/"
[2026-01-13 18:21:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 18:21:17] 
[2026-01-13 18:21:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 18:21:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 18:21:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 18:21:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 18:21:17] 
[2026-01-13 18:21:17] 2026-01-13 17:20:45,826 | INFO     | ***************************************
[2026-01-13 18:21:17] 2026-01-13 17:20:46,330 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | INFO     | sufficient remaining disk space (241137876992 B)
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | INFO     | update_server=False
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:21:17] 2026-01-13 17:20:46,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 18:21:17] 2026-01-13 17:20:46,626 | INFO     | all payload control threads have been joined
[2026-01-13 18:21:17] 2026-01-13 17:20:46,777 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 18:21:17] 2026-01-13 17:20:46,777 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 18:21:17] 2026-01-13 17:20:46,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 18:21:17] 2026-01-13 17:20:46,777 | INFO     | will abort loop
[2026-01-13 18:21:17] 2026-01-13 17:20:46,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 18:21:17] 2026-01-13 17:20:46,806 | INFO     | all data control threads have been joined
[2026-01-13 18:21:17] 2026-01-13 17:20:47,355 | INFO     | [job] queue monitor thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,355 | INFO     | [job] retrieve thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,632 | INFO     | [payload] control thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,673 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,783 | INFO     | [job] job monitor thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,811 | INFO     | [data] control thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,837 | INFO     | [data] copytool_in thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:47,989 | INFO     | all job control threads have been joined
[2026-01-13 18:21:17] 2026-01-13 17:20:48,195 | INFO     | [payload] failed_post thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,341 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,355 | INFO     | [data] copytool_out thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,391 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,442 | INFO     | [job] validate thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,672 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,944 | INFO     | [payload] validate_post thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:48,994 | INFO     | [job] control thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:50,805 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 18:21:17] 2026-01-13 17:20:58,428 | INFO     | [monitor] cgroup control has ended
[2026-01-13 18:21:17] 2026-01-13 17:21:00,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660437681984)>', '<ExcThread(monitor, started 140659356849920)>']
[2026-01-13 18:21:17] 2026-01-13 17:21:05,312 | INFO     | all workflow threads have been joined
[2026-01-13 18:21:17] 2026-01-13 17:21:05,312 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 18:21:17] 2026-01-13 17:21:05,312 | INFO     | traces error code: 0
[2026-01-13 18:21:17] 2026-01-13 17:21:05,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 18:21:17] 2026-01-13 17:21:17,126 | INFO     | PID=1253489 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 18:21:17] 2026-01-13 17:21:17,127 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 18:21:17] 2026-01-13 17:21:17,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 18:21:17] 2026-01-13 17:21:17,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 18:21:17] 2026-01-13 17:21:17,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 18:21:17] 2026-01-13 17:21:17,127 | INFO     | [monitor] control thread has ended
[2026-01-13 18:21:17] 2026-01-13 17:21:17,203 [wrapper] ==== pilot stdout END ====
[2026-01-13 18:21:17] 2026-01-13 17:21:17,208 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 18:21:17] 2026-01-13 17:21:17,212 [wrapper] pilotpid: 1253489
[2026-01-13 18:21:17] 2026-01-13 17:21:17,216 [wrapper] Pilot exit status: 0
[2026-01-13 18:21:17] 2026-01-13 17:21:17,227 [wrapper] pandaids: 6966858151
[2026-01-13 18:21:17] 2026-01-13 17:21:17,250 [wrapper] cleanup supervisor_pilot 1315011 1253490
[2026-01-13 18:21:17] 2026-01-13 17:21:17,255 [wrapper] Test setup, not cleaning
[2026-01-13 18:21:17] 2026-01-13 17:21:17,259 [wrapper] apfmon messages muted
[2026-01-13 18:21:17] 2026-01-13 17:21:17,263 [wrapper] ==== wrapper stdout END ====
[2026-01-13 18:21:17] 2026-01-13 17:21:17,267 [wrapper] ==== wrapper stderr END ====
[2026-01-13 18:21:17]  *** Error codes and diagnostics ***
[2026-01-13 18:21:17]     "exeErrorCode": 0,
[2026-01-13 18:21:17]     "exeErrorDiag": "",
[2026-01-13 18:21:17]     "pilotErrorCode": 0,
[2026-01-13 18:21:17]     "pilotErrorDiag": "",
[2026-01-13 18:21:17]  *** Listing of results directory ***
[2026-01-13 18:21:17] total 1494360
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc     579449 Jan 12 09:50 pilot3.tar.gz
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc       5112 Jan 12 09:51 queuedata.json
[2026-01-13 18:21:17] -rwx------ 1 boinc boinc      36322 Jan 12 09:52 runpilot2-wrapper.sh
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc        100 Jan 13 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 18:21:17] -rwxr-xr-x 1 boinc boinc       7986 Jan 13 09:42 run_atlas
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc        105 Jan 13 09:42 job.xml
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc  323975106 Jan 13 09:42 EVNT.48118027._000142.pool.root.1
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc     592613 Jan 13 09:42 input.tar.gz
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc      15847 Jan 13 09:42 start_atlas.sh
[2026-01-13 18:21:17] drwxrwx--x 2 boinc boinc       4096 Jan 13 09:42 shared
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc          0 Jan 13 09:42 boinc_setup_complete
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc       6376 Jan 13 09:42 init_data.xml
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc          0 Jan 13 09:42 boinc_lockfile
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc       2896 Jan 13 09:42 pandaJob.out
[2026-01-13 18:21:17] -rw------- 1 boinc boinc     993000 Jan 13 09:42 agis_schedconf.cvmfs.json
[2026-01-13 18:21:17] drwx------ 5 boinc boinc       4096 Jan 13 09:42 pilot3
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc        532 Jan 13 18:15 boinc_task_state.xml
[2026-01-13 18:21:17] -rw------- 1 boinc boinc 1190361588 Jan 13 18:20 HITS.48187943._000691.pool.root.1
[2026-01-13 18:21:17] -rw------- 1 boinc boinc       1028 Jan 13 18:20 memory_monitor_summary.json
[2026-01-13 18:21:17] -rw------- 1 boinc boinc    1516246 Jan 13 18:20 agis_ddmendpoints.agis.ALL.json
[2026-01-13 18:21:17] -rw------- 1 boinc boinc    1593186 Jan 13 18:20 log.48187943._000691.job.log.tgz.1
[2026-01-13 18:21:17] -rw------- 1 boinc boinc      26866 Jan 13 18:20 heartbeat.json
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc       8192 Jan 13 18:21 boinc_mmap_file
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc         29 Jan 13 18:21 wrapper_checkpoint.txt
[2026-01-13 18:21:17] -rw------- 1 boinc boinc        747 Jan 13 18:21 pilotlog.txt
[2026-01-13 18:21:17] -rw------- 1 boinc boinc         95 Jan 13 18:21 pilot_heartbeat.json
[2026-01-13 18:21:17] -rw------- 1 boinc boinc    4381821 Jan 13 18:21 log.48187943._000691.job.log.1
[2026-01-13 18:21:17] -rw------- 1 boinc boinc        353 Jan 13 18:21 output.list
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc        620 Jan 13 18:21 runtime_log
[2026-01-13 18:21:17] -rw------- 1 boinc boinc    6010880 Jan 13 18:21 result.tar.gz
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc       8898 Jan 13 18:21 runtime_log.err
[2026-01-13 18:21:17] -rw------- 1 boinc boinc        667 Jan 13 18:21 gFVLDmupSz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRFnKDmL3Hlhn.diag
[2026-01-13 18:21:17] -rw-r--r-- 1 boinc boinc      11846 Jan 13 18:21 stderr.txt
[2026-01-13 18:21:17] HITS file was successfully produced:
[2026-01-13 18:21:17] -rw------- 1 boinc boinc 1190361588 Jan 13 18:20 shared/HITS.pool.root.1
[2026-01-13 18:21:17]  *** Contents of shared directory: ***
[2026-01-13 18:21:17] total 1485324
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc  323975106 Jan 13 09:42 ATLAS.root_0
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc     592613 Jan 13 09:42 input.tar.gz
[2026-01-13 18:21:17] -rw-r--r-- 2 boinc boinc      15847 Jan 13 09:42 start_atlas.sh
[2026-01-13 18:21:17] -rw------- 1 boinc boinc 1190361588 Jan 13 18:20 HITS.pool.root.1
[2026-01-13 18:21:17] -rw------- 1 boinc boinc    6010880 Jan 13 18:21 result.tar.gz
18:21:18 (1249677): run_atlas exited; CPU time 122035.593031
18:21:18 (1249677): called boinc_finish(0)

</stderr_txt>
]]>

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