Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:00:27 (1222029): wrapper (7.7.26015): starting
08:00:27 (1222029): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 08:00:27] Arguments: --nthreads 4
[2026-01-13 08:00:27] Threads: 4
[2026-01-13 08:00:27] Checking for CVMFS
[2026-01-13 08:00:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 08:00:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 08:00:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 08:00:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 08:00:28] 2.9.2.0 1201511 8 51220 155079 3 188 18436369 36864000 0 130560 0 59097 99.995 1437 1900 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 08:00:28] CVMFS is ok
[2026-01-13 08:00:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 08:00:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 08:00:28] Further information can be found at the LHC@home message board.
[2026-01-13 08:00:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 08:00:28] Checking for apptainer binary...
[2026-01-13 08:00:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 08:00:28] Running /usr/bin/apptainer --version
[2026-01-13 08:00:28] apptainer version 1.4.1-1.1
[2026-01-13 08:00:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 08:00:28] thA381
[2026-01-13 08:00:28] apptainer works
[2026-01-13 08:00:28] Set ATHENA_PROC_NUMBER=4
[2026-01-13 08:00:28] Set ATHENA_CORE_NUMBER=4
[2026-01-13 08:00:28] Starting ATLAS job with PandaID=6963160766
[2026-01-13 08:00:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 09:41:47]  *** The last 200 lines of the pilot log: ***
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | job 6963160766 has completed (purged errors)
[2026-01-13 09:41:47] 2026-01-13 08:41:14,204 | INFO     | overall cleanup function is called
[2026-01-13 09:41:47] 2026-01-13 08:41:14,395 | INFO     | PID=1225815 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 09:41:47] 2026-01-13 08:41:15,211 | INFO     | --- collectZombieJob: --- 10, [1232390]
[2026-01-13 09:41:47] 2026-01-13 08:41:15,211 | INFO     | zombie collector waiting for pid 1232390
[2026-01-13 09:41:47] 2026-01-13 08:41:15,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 09:41:47] 2026-01-13 08:41:15,211 | INFO     | collected zombie processes
[2026-01-13 09:41:47] 2026-01-13 08:41:15,211 | INFO     | will attempt to kill all subprocesses of pid=1232390
[2026-01-13 09:41:47] 2026-01-13 08:41:15,256 | INFO     | process IDs to be killed: [1232390] (in reverse order)
[2026-01-13 09:41:47] 2026-01-13 08:41:15,289 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 09:41:47] 2026-01-13 08:41:15,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 09:41:47] 2026-01-13 08:41:15,292 | INFO     | did not find any defunct processes belonging to 1232390
[2026-01-13 09:41:47] 2026-01-13 08:41:15,293 | INFO     | did not find any defunct processes belonging to 1232390
[2026-01-13 09:41:47] 2026-01-13 08:41:15,293 | INFO     | ready for new job
[2026-01-13 09:41:47] 2026-01-13 08:41:15,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 09:41:47] 2026-01-13 08:41:15,294 | INFO     | ***************************************
[2026-01-13 09:41:47] 2026-01-13 08:41:15,294 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 09:41:47] 2026-01-13 08:41:15,294 | INFO     | ***************************************
[2026-01-13 09:41:47] 2026-01-13 08:41:15,294 | INFO     | 
[2026-01-13 09:41:47] 2026-01-13 08:41:15,294 | INFO     | architecture information:
[2026-01-13 09:41:47] 2026-01-13 08:41:15,295 | INFO     | executing command: cat /etc/os-release
[2026-01-13 09:41:47] 2026-01-13 08:41:15,309 | INFO     | cat /etc/os-release:
[2026-01-13 09:41:47] NAME="CentOS Linux"
[2026-01-13 09:41:47] VERSION="7 (Core)"
[2026-01-13 09:41:47] ID="centos"
[2026-01-13 09:41:47] ID_LIKE="rhel fedora"
[2026-01-13 09:41:47] VERSION_ID="7"
[2026-01-13 09:41:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 09:41:47] ANSI_COLOR="0;31"
[2026-01-13 09:41:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 09:41:47] HOME_URL="https://www.centos.org/"
[2026-01-13 09:41:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 09:41:47] 
[2026-01-13 09:41:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 09:41:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 09:41:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 09:41:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 09:41:47] 
[2026-01-13 09:41:47] 2026-01-13 08:41:15,309 | INFO     | ***************************************
[2026-01-13 09:41:47] 2026-01-13 08:41:15,812 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | INFO     | sufficient remaining disk space (242735906816 B)
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | INFO     | update_server=False
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | INFO     | aborting loop
[2026-01-13 09:41:47] 2026-01-13 08:41:15,830 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:41:47] 2026-01-13 08:41:15,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 09:41:47] 2026-01-13 08:41:16,381 | INFO     | all data control threads have been joined
[2026-01-13 09:41:47] 2026-01-13 08:41:16,552 | INFO     | all job control threads have been joined
[2026-01-13 09:41:47] 2026-01-13 08:41:16,836 | INFO     | [job] retrieve thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:16,836 | INFO     | [job] job monitor thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:16,836 | INFO     | [job] queue monitor thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:16,862 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,127 | INFO     | all payload control threads have been joined
[2026-01-13 09:41:47] 2026-01-13 08:41:17,199 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,361 | INFO     | [data] copytool_in thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,387 | INFO     | [data] control thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,558 | INFO     | [job] control thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,726 | INFO     | [payload] failed_post thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:17,837 | INFO     | [data] copytool_out thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:18,127 | INFO     | [job] validate thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:18,133 | INFO     | [payload] control thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:18,239 | INFO     | [payload] validate_post thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:18,271 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:18,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 09:41:47] 2026-01-13 08:41:22,435 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:26,219 | INFO     | job.realtimelogging is not enabled
[2026-01-13 09:41:47] 2026-01-13 08:41:27,224 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 09:41:47] 2026-01-13 08:41:42,519 | INFO     | [monitor] cgroup control has ended
[2026-01-13 09:41:47] 2026-01-13 08:41:42,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327287838528)>', '<ExcThread(monitor, started 140325968406272)>']
[2026-01-13 09:41:47] 2026-01-13 08:41:46,524 | INFO     | PID=1225815 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 09:41:47] 2026-01-13 08:41:46,525 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 09:41:47] 2026-01-13 08:41:46,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 09:41:47] 2026-01-13 08:41:46,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 09:41:47] 2026-01-13 08:41:46,525 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 09:41:47] 2026-01-13 08:41:46,525 | INFO     | [monitor] control thread has ended
[2026-01-13 09:41:47] 2026-01-13 08:41:47,751 | INFO     | all workflow threads have been joined
[2026-01-13 09:41:47] 2026-01-13 08:41:47,752 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 09:41:47] 2026-01-13 08:41:47,752 | INFO     | traces error code: 0
[2026-01-13 09:41:47] 2026-01-13 08:41:47,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 09:41:47] 2026-01-13 08:41:47,832 [wrapper] ==== pilot stdout END ====
[2026-01-13 09:41:47] 2026-01-13 08:41:47,836 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 09:41:47] 2026-01-13 08:41:47,841 [wrapper] pilotpid: 1225815
[2026-01-13 09:41:47] 2026-01-13 08:41:47,844 [wrapper] Pilot exit status: 0
[2026-01-13 09:41:47] 2026-01-13 08:41:47,856 [wrapper] pandaids: 6963160766
[2026-01-13 09:41:47] 2026-01-13 08:41:47,879 [wrapper] cleanup supervisor_pilot 1244802 1225816
[2026-01-13 09:41:47] 2026-01-13 08:41:47,883 [wrapper] Test setup, not cleaning
[2026-01-13 09:41:47] 2026-01-13 08:41:47,886 [wrapper] apfmon messages muted
[2026-01-13 09:41:47] 2026-01-13 08:41:47,890 [wrapper] ==== wrapper stdout END ====
[2026-01-13 09:41:47] 2026-01-13 08:41:47,894 [wrapper] ==== wrapper stderr END ====
[2026-01-13 09:41:47]  *** Error codes and diagnostics ***
[2026-01-13 09:41:47]     "exeErrorCode": 0,
[2026-01-13 09:41:47]     "exeErrorDiag": "",
[2026-01-13 09:41:47]     "pilotErrorCode": 0,
[2026-01-13 09:41:47]     "pilotErrorDiag": "",
[2026-01-13 09:41:47]  *** Listing of results directory ***
[2026-01-13 09:41:47] total 441492
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-13 09:41:47] -rwx------ 1 boinc boinc     36322 Jan  8 22:47 runpilot2-wrapper.sh
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:50 queuedata.json
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc       100 Jan 13 08:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 09:41:47] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 08:00 run_atlas
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc       105 Jan 13 08:00 job.xml
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc 226407590 Jan 13 08:00 EVNT.47898824._001259.pool.root.1
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc    592402 Jan 13 08:00 input.tar.gz
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc     15847 Jan 13 08:00 start_atlas.sh
[2026-01-13 09:41:47] drwxrwx--x 2 boinc boinc      4096 Jan 13 08:00 shared
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc         0 Jan 13 08:00 boinc_setup_complete
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc      6376 Jan 13 08:00 init_data.xml
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc         0 Jan 13 08:00 boinc_lockfile
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc      2520 Jan 13 08:00 pandaJob.out
[2026-01-13 09:41:47] -rw------- 1 boinc boinc    993374 Jan 13 08:00 agis_schedconf.cvmfs.json
[2026-01-13 09:41:47] -rw------- 1 boinc boinc   1516240 Jan 13 08:00 agis_ddmendpoints.agis.ALL.json
[2026-01-13 09:41:47] drwx------ 5 boinc boinc      4096 Jan 13 08:00 pilot3
[2026-01-13 09:41:47] -rw------- 1 boinc boinc 219441558 Jan 13 09:40 HITS.47898826._032589.pool.root.1
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc       529 Jan 13 09:40 boinc_task_state.xml
[2026-01-13 09:41:47] -rw------- 1 boinc boinc      1018 Jan 13 09:41 memory_monitor_summary.json
[2026-01-13 09:41:47] -rw------- 1 boinc boinc    287952 Jan 13 09:41 log.47898826._032589.job.log.tgz.1
[2026-01-13 09:41:47] -rw------- 1 boinc boinc        95 Jan 13 09:41 pilot_heartbeat.json
[2026-01-13 09:41:47] -rw------- 1 boinc boinc      7760 Jan 13 09:41 heartbeat.json
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc        27 Jan 13 09:41 wrapper_checkpoint.txt
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc      8192 Jan 13 09:41 boinc_mmap_file
[2026-01-13 09:41:47] -rw------- 1 boinc boinc      4824 Jan 13 09:41 pilotlog.txt
[2026-01-13 09:41:47] -rw------- 1 boinc boinc    876128 Jan 13 09:41 log.47898826._032589.job.log.1
[2026-01-13 09:41:47] -rw------- 1 boinc boinc       357 Jan 13 09:41 output.list
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc       620 Jan 13 09:41 runtime_log
[2026-01-13 09:41:47] -rw------- 1 boinc boinc   1187840 Jan 13 09:41 result.tar.gz
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc      8897 Jan 13 09:41 runtime_log.err
[2026-01-13 09:41:47] -rw------- 1 boinc boinc       659 Jan 13 09:41 pMEMDmO2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTZlKDmUd8SGm.diag
[2026-01-13 09:41:47] -rw-r--r-- 1 boinc boinc     11627 Jan 13 09:41 stderr.txt
[2026-01-13 09:41:47] HITS file was successfully produced:
[2026-01-13 09:41:47] -rw------- 1 boinc boinc 219441558 Jan 13 09:40 shared/HITS.pool.root.1
[2026-01-13 09:41:47]  *** Contents of shared directory: ***
[2026-01-13 09:41:47] total 437168
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc 226407590 Jan 13 08:00 ATLAS.root_0
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc    592402 Jan 13 08:00 input.tar.gz
[2026-01-13 09:41:47] -rw-r--r-- 2 boinc boinc     15847 Jan 13 08:00 start_atlas.sh
[2026-01-13 09:41:47] -rw------- 1 boinc boinc 219441558 Jan 13 09:40 HITS.pool.root.1
[2026-01-13 09:41:47] -rw------- 1 boinc boinc   1187840 Jan 13 09:41 result.tar.gz
09:41:49 (1222029): run_atlas exited; CPU time 23040.513571
09:41:49 (1222029): called boinc_finish(0)

</stderr_txt>
]]>

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