Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:51:44 (1201315): wrapper (7.7.26015): starting
07:51:44 (1201315): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 07:51:44] Arguments: --nthreads 4
[2026-01-13 07:51:44] Threads: 4
[2026-01-13 07:51:44] Checking for CVMFS
[2026-01-13 07:51:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 07:51:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 07:51:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 07:51:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 07:51:46] 2.9.2.0 1201511 0 30052 155079 4 1 18434803 36864001 0 130560 0 0 0.000 1335 1838 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 07:51:46] CVMFS is ok
[2026-01-13 07:51:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 07:51:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 07:51:46] Further information can be found at the LHC@home message board.
[2026-01-13 07:51:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 07:51:46] Checking for apptainer binary...
[2026-01-13 07:51:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 07:51:46] Running /usr/bin/apptainer --version
[2026-01-13 07:51:46] apptainer version 1.4.1-1.1
[2026-01-13 07:51:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 07:51:46] thA381
[2026-01-13 07:51:46] apptainer works
[2026-01-13 07:51:46] Set ATHENA_PROC_NUMBER=4
[2026-01-13 07:51:46] Set ATHENA_CORE_NUMBER=4
[2026-01-13 07:51:46] Starting ATLAS job with PandaID=6963160763
[2026-01-13 07:51:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 08:00:23]  *** The last 200 lines of the pilot log: ***
[2026-01-13 08:00:23] 2026-01-13 06:59:52,760 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 08:00:23] 2026-01-13 06:59:52,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 08:00:23] 2026-01-13 06:59:52,762 | INFO     | did not find any defunct processes belonging to 1212231
[2026-01-13 08:00:23] 2026-01-13 06:59:52,763 | INFO     | did not find any defunct processes belonging to 1212231
[2026-01-13 08:00:23] 2026-01-13 06:59:52,763 | INFO     | ready for new job
[2026-01-13 08:00:23] 2026-01-13 06:59:52,763 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 08:00:23] 2026-01-13 06:59:52,764 | INFO     | ***************************************
[2026-01-13 08:00:23] 2026-01-13 06:59:52,764 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 08:00:23] 2026-01-13 06:59:52,764 | INFO     | ***************************************
[2026-01-13 08:00:23] 2026-01-13 06:59:52,764 | INFO     | 
[2026-01-13 08:00:23] 2026-01-13 06:59:52,764 | INFO     | architecture information:
[2026-01-13 08:00:23] 2026-01-13 06:59:52,765 | INFO     | executing command: cat /etc/os-release
[2026-01-13 08:00:23] 2026-01-13 06:59:52,779 | INFO     | cat /etc/os-release:
[2026-01-13 08:00:23] NAME="CentOS Linux"
[2026-01-13 08:00:23] VERSION="7 (Core)"
[2026-01-13 08:00:23] ID="centos"
[2026-01-13 08:00:23] ID_LIKE="rhel fedora"
[2026-01-13 08:00:23] VERSION_ID="7"
[2026-01-13 08:00:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 08:00:23] ANSI_COLOR="0;31"
[2026-01-13 08:00:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 08:00:23] HOME_URL="https://www.centos.org/"
[2026-01-13 08:00:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 08:00:23] 
[2026-01-13 08:00:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 08:00:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 08:00:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 08:00:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 08:00:23] 
[2026-01-13 08:00:23] 2026-01-13 06:59:52,779 | INFO     | ***************************************
[2026-01-13 08:00:23] 2026-01-13 06:59:53,283 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | INFO     | sufficient remaining disk space (243065159680 B)
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | INFO     | update_server=False
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 08:00:23] 2026-01-13 06:59:53,301 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 08:00:23] 2026-01-13 06:59:53,627 | INFO     | all job control threads have been joined
[2026-01-13 08:00:23] 2026-01-13 06:59:53,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 08:00:23] 2026-01-13 06:59:53,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 08:00:23] 2026-01-13 06:59:53,780 | INFO     | aborting loop
[2026-01-13 08:00:23] 2026-01-13 06:59:54,307 | INFO     | [job] queue monitor thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,307 | INFO     | [job] retrieve thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,381 | INFO     | all data control threads have been joined
[2026-01-13 08:00:23] 2026-01-13 06:59:54,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 08:00:23] 2026-01-13 06:59:54,567 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,633 | INFO     | [job] control thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,680 | INFO     | all payload control threads have been joined
[2026-01-13 08:00:23] 2026-01-13 06:59:54,786 | INFO     | [job] job monitor thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,787 | INFO     | [job] validate thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,878 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:54,976 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,050 | INFO     | [payload] failed_post thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,298 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,387 | INFO     | [data] control thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,504 | INFO     | [data] copytool_in thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,584 | INFO     | [payload] validate_post thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:55,685 | INFO     | [payload] control thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:56,508 | INFO     | [data] copytool_out thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:57,168 | INFO     | [monitor] cgroup control has ended
[2026-01-13 08:00:23] 2026-01-13 06:59:57,649 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 08:00:23] 2026-01-13 06:59:57,688 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551005865792)>', '<ExcThread(monitor, started 140550380447488)>']
[2026-01-13 08:00:23] 2026-01-13 07:00:02,714 | INFO     | all workflow threads have been joined
[2026-01-13 08:00:23] 2026-01-13 07:00:02,714 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 08:00:23] 2026-01-13 07:00:02,714 | INFO     | traces error code: 0
[2026-01-13 08:00:23] 2026-01-13 07:00:02,714 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 08:00:23] 2026-01-13 07:00:23,444 | INFO     | PID=1205656 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 08:00:23] 2026-01-13 07:00:23,444 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 08:00:23] 2026-01-13 07:00:23,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 08:00:23] 2026-01-13 07:00:23,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 08:00:23] 2026-01-13 07:00:23,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 08:00:23] 2026-01-13 07:00:23,445 | INFO     | [monitor] control thread has ended
[2026-01-13 08:00:23] 2026-01-13 07:00:23,519 [wrapper] ==== pilot stdout END ====
[2026-01-13 08:00:23] 2026-01-13 07:00:23,523 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 08:00:23] 2026-01-13 07:00:23,527 [wrapper] pilotpid: 1205656
[2026-01-13 08:00:23] 2026-01-13 07:00:23,531 [wrapper] Pilot exit status: 0
[2026-01-13 08:00:23] 2026-01-13 07:00:23,543 [wrapper] pandaids: 6963160763
[2026-01-13 08:00:23] 2026-01-13 07:00:23,565 [wrapper] cleanup supervisor_pilot 1205662 1205657
[2026-01-13 08:00:23] 2026-01-13 07:00:23,568 [wrapper] Test setup, not cleaning
[2026-01-13 08:00:23] 2026-01-13 07:00:23,572 [wrapper] apfmon messages muted
[2026-01-13 08:00:23] 2026-01-13 07:00:23,576 [wrapper] ==== wrapper stdout END ====
[2026-01-13 08:00:23] 2026-01-13 07:00:23,579 [wrapper] ==== wrapper stderr END ====
[2026-01-13 08:00:23]  *** Error codes and diagnostics ***
[2026-01-13 08:00:23]     "exeErrorCode": 65,
[2026-01-13 08:00:23]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 8314.8 KB/s",
[2026-01-13 08:00:23]     "pilotErrorCode": 1305,
[2026-01-13 08:00:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-01-13 08:00:23]  *** Listing of results directory ***
[2026-01-13 08:00:23] total 225416
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-13 08:00:23] -rwx------ 1 boinc boinc     36322 Jan  8 22:47 runpilot2-wrapper.sh
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:50 queuedata.json
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc       100 Jan 13 07:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 08:00:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 07:51 run_atlas
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc       105 Jan 13 07:51 job.xml
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc 226407590 Jan 13 07:51 EVNT.47898824._001259.pool.root.1
[2026-01-13 08:00:23] drwxrwx--x 2 boinc boinc      4096 Jan 13 07:51 shared
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc    592400 Jan 13 07:51 input.tar.gz
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc     15847 Jan 13 07:51 start_atlas.sh
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc         0 Jan 13 07:51 boinc_setup_complete
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc      6376 Jan 13 07:51 init_data.xml
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc         0 Jan 13 07:51 boinc_lockfile
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc      2520 Jan 13 07:51 pandaJob.out
[2026-01-13 08:00:23] -rw------- 1 boinc boinc    993374 Jan 13 07:51 agis_schedconf.cvmfs.json
[2026-01-13 08:00:23] -rw------- 1 boinc boinc   1516240 Jan 13 07:51 agis_ddmendpoints.agis.ALL.json
[2026-01-13 08:00:23] drwx------ 5 boinc boinc      4096 Jan 13 07:51 pilot3
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc       527 Jan 13 07:57 boinc_task_state.xml
[2026-01-13 08:00:23] -rw------- 1 boinc boinc      1005 Jan 13 07:57 memory_monitor_summary.json
[2026-01-13 08:00:23] -rw------- 1 boinc boinc    131162 Jan 13 07:57 log.47898826._032586.job.log.tgz.1
[2026-01-13 08:00:23] -rw------- 1 boinc boinc      9839 Jan 13 07:59 heartbeat.json
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc        24 Jan 13 07:59 wrapper_checkpoint.txt
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc      8192 Jan 13 07:59 boinc_mmap_file
[2026-01-13 08:00:23] -rw------- 1 boinc boinc       747 Jan 13 08:00 pilotlog.txt
[2026-01-13 08:00:23] -rw------- 1 boinc boinc        95 Jan 13 08:00 pilot_heartbeat.json
[2026-01-13 08:00:23] -rw------- 1 boinc boinc    123288 Jan 13 08:00 log.47898826._032586.job.log.1
[2026-01-13 08:00:23] -rw------- 1 boinc boinc       188 Jan 13 08:00 output.list
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc       620 Jan 13 08:00 runtime_log
[2026-01-13 08:00:23] -rw------- 1 boinc boinc    276480 Jan 13 08:00 result.tar.gz
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc      8744 Jan 13 08:00 runtime_log.err
[2026-01-13 08:00:23] -rw------- 1 boinc boinc       650 Jan 13 08:00 KyCMDmO2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSZlKDmuC4Nxm.diag
[2026-01-13 08:00:23] -rw-r--r-- 1 boinc boinc     10449 Jan 13 08:00 stderr.txt
[2026-01-13 08:00:23] No HITS result produced
[2026-01-13 08:00:23]  *** Contents of shared directory: ***
[2026-01-13 08:00:23] total 221976
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc 226407590 Jan 13 07:51 ATLAS.root_0
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc    592400 Jan 13 07:51 input.tar.gz
[2026-01-13 08:00:23] -rw-r--r-- 2 boinc boinc     15847 Jan 13 07:51 start_atlas.sh
[2026-01-13 08:00:23] -rw------- 1 boinc boinc    276480 Jan 13 08:00 result.tar.gz
08:00:24 (1201315): run_atlas exited; CPU time 198.652736
08:00:24 (1201315): called boinc_finish(0)

</stderr_txt>
]]>

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