Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:40 (2148040): wrapper (7.7.26015): starting
00:06:40 (2148040): wrapper: running run_atlas (--nthreads 12)
[2026-01-13 00:06:40] Arguments: --nthreads 12
[2026-01-13 00:06:40] Threads: 12
[2026-01-13 00:06:40] Checking for CVMFS
[2026-01-13 00:06:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 00:06:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 00:06:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 00:06:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 00:06:41] 2.13.3.0 5581 26677 173800 155077 0 72 38705964 39288833 9899 16776704 0 12210566 99.594 15355660 40216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-13 00:06:41] CVMFS is ok
[2026-01-13 00:06:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 00:06:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 00:06:42] Further information can be found at the LHC@home message board.
[2026-01-13 00:06:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 00:06:42] Checking for apptainer binary...
[2026-01-13 00:06:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 00:06:42] Running /usr/bin/apptainer --version
[2026-01-13 00:06:42] apptainer version 1.4.5-2.el9
[2026-01-13 00:06:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 00:06:43] c-210-5.aglt2.org
[2026-01-13 00:06:43] apptainer works
[2026-01-13 00:06:43] Set ATHENA_PROC_NUMBER=12
[2026-01-13 00:06:43] Set ATHENA_CORE_NUMBER=12
[2026-01-13 00:06:43] Starting ATLAS job with PandaID=6968277477
[2026-01-13 00:06:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 17:01:37]  *** The last 200 lines of the pilot log: ***
[2026-01-13 17:01:37] 2026-01-13 22:00:31,242 | INFO     | preparing for final server update for job 6968277477 in state='finished'
[2026-01-13 17:01:37] 2026-01-13 22:00:31,422 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-13 17:01:37] 2026-01-13 22:00:31,423 | INFO     | this job has now completed (state=finished)
[2026-01-13 17:01:37] 2026-01-13 22:00:31,423 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-13 17:01:37] 2026-01-13 22:00:31,424 | INFO     | log transfer has been attempted: DONE
[2026-01-13 17:01:37] 2026-01-13 22:00:31,424 | INFO     | job 6968277477 has finished - writing final server update
[2026-01-13 17:01:37] 2026-01-13 22:00:31,456 | INFO     | total number of processed events: 400 (read)
[2026-01-13 17:01:37] 2026-01-13 22:00:31,456 | INFO     | executing command: lscpu
[2026-01-13 17:01:37] 2026-01-13 22:00:31,498 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-13 17:01:37] 2026-01-13 22:00:32,522 | INFO     | time since job start (60772s) is within the limit (349056.0s)
[2026-01-13 17:01:37] 2026-01-13 22:00:33,496 | INFO     | monitor loop #3718: job 0:6968277477 is in state 'finished'
[2026-01-13 17:01:37] 2026-01-13 22:00:33,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 17:01:37] 2026-01-13 22:00:34,530 | INFO     | time since job start (60774s) is within the limit (349056.0s)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,004 | INFO     | monitor loop #3719: job 0:6968277477 is in state 'finished'
[2026-01-13 17:01:37] 2026-01-13 22:00:36,004 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,342 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 17:01:37] 2026-01-13 22:00:36,349 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8677
[2026-01-13 17:01:37] 2026-01-13 22:00:36,356 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6968277477/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,357 | INFO     | extracted standard info from prmon json
[2026-01-13 17:01:37] 2026-01-13 22:00:36,357 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 17:01:37] 2026-01-13 22:00:36,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 17:01:37] 2026-01-13 22:00:36,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 17:01:37] 2026-01-13 22:00:36,358 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 17:01:37] 2026-01-13 22:00:36,376 | INFO     | fitting pss+swap vs Time
[2026-01-13 17:01:37] 2026-01-13 22:00:36,378 | INFO     | sum of square deviations: 304524317180.94257
[2026-01-13 17:01:37] 2026-01-13 22:00:36,403 | INFO     | sum of deviations: 3287412982481.5425
[2026-01-13 17:01:37] 2026-01-13 22:00:36,404 | INFO     | mean x: 1768311282.168008
[2026-01-13 17:01:37] 2026-01-13 22:00:36,404 | INFO     | mean y: 2667416.2183098593
[2026-01-13 17:01:37] 2026-01-13 22:00:36,404 | INFO     | intersect: -19086676646.290882
[2026-01-13 17:01:37] 2026-01-13 22:00:36,405 | INFO     | chi2: 13.510322272313237
[2026-01-13 17:01:37] 2026-01-13 22:00:36,407 | INFO     | sum of square deviations: 299952603062.6716
[2026-01-13 17:01:37] 2026-01-13 22:00:36,431 | INFO     | sum of deviations: 3270279086974.595
[2026-01-13 17:01:37] 2026-01-13 22:00:36,431 | INFO     | mean x: 1768311129.6814964
[2026-01-13 17:01:37] 2026-01-13 22:00:36,431 | INFO     | mean y: 2666844.7320525786
[2026-01-13 17:01:37] 2026-01-13 22:00:36,431 | INFO     | intersect: -19276615440.58806
[2026-01-13 17:01:37] 2026-01-13 22:00:36,433 | INFO     | chi2: 13.49000810495578
[2026-01-13 17:01:37] 2026-01-13 22:00:36,433 | INFO     | current chi2=13.49000810495578 (change=0.15036034631895226 %)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,433 | INFO     | right removable region: 988
[2026-01-13 17:01:37] 2026-01-13 22:00:36,434 | INFO     | sum of square deviations: 299950985342.67114
[2026-01-13 17:01:37] 2026-01-13 22:00:36,459 | INFO     | sum of deviations: 2960639761184.654
[2026-01-13 17:01:37] 2026-01-13 22:00:36,459 | INFO     | mean x: 1768311434.6814964
[2026-01-13 17:01:37] 2026-01-13 22:00:36,459 | INFO     | mean y: 2678310.2052578363
[2026-01-13 17:01:37] 2026-01-13 22:00:36,459 | INFO     | intersect: -17451283835.29178
[2026-01-13 17:01:37] 2026-01-13 22:00:36,461 | INFO     | chi2: 10.17360004949888
[2026-01-13 17:01:37] 2026-01-13 22:00:36,461 | INFO     | current chi2=10.17360004949888 (change=24.697576827255386 %)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,461 | INFO     | left removable region: 10
[2026-01-13 17:01:37] 2026-01-13 22:00:36,462 | INFO     | sum of square deviations: 290053192149.1874
[2026-01-13 17:01:37] 2026-01-13 22:00:36,487 | INFO     | sum of deviations: 2673241110198.5864
[2026-01-13 17:01:37] 2026-01-13 22:00:36,487 | INFO     | mean x: 1768311404.2116563
[2026-01-13 17:01:37] 2026-01-13 22:00:36,487 | INFO     | mean y: 2686857.562372188
[2026-01-13 17:01:37] 2026-01-13 22:00:36,487 | INFO     | intersect: -16294747093.587587
[2026-01-13 17:01:37] 2026-01-13 22:00:36,489 | INFO     | chi2: 8.035391215525845
[2026-01-13 17:01:37] 2026-01-13 22:00:36,489 | INFO     | current memory leak: 9.22 B/s (using 978 data points, chi2=8.04)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,490 | INFO     | could have reported an average CPU frequency of 2599 MHz (36 samples)
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | ..............................
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . Timing measurements:
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . get job = 0 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . initial setup = 3 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . payload setup = 39 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . stage-in = 0 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . payload execution = 60655 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,491 | INFO     | . stage-out = 3 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,492 | INFO     | . log creation = 0 s
[2026-01-13 17:01:37] 2026-01-13 22:00:36,492 | INFO     | ..............................
[2026-01-13 17:01:37] 2026-01-13 22:00:36,542 | INFO     | time since job start (60776s) is within the limit (349056.0s)
[2026-01-13 17:01:37] 2026-01-13 22:00:37,044 | INFO     | 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,044 | INFO     | job summary report
[2026-01-13 17:01:37] 2026-01-13 22:00:37,044 | INFO     | --------------------------------------------------
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | PanDA job id: 6968277477
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | task id: 48188657
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | errors: (none)
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | pilot state: finished 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | transexitcode: 0
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | exeerrorcode: 0
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | exeerrordiag: 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,045 | INFO     | exitcode: 0
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | exitmsg: OK
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | cpuconsumptiontime: 73886 s
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | nevents: 400
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | neventsw: 0
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | pid: 2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | pgrp: 2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | corecount: 12
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | event service: False
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | sizes: {0: 2283297, 1: 2283898, 2: 2283982, 3: 2284209, 14: 2284209, 25: 2284237, 32: 2284655, 36: 2284683, 60698: 2336747, 60699: 2336746, 60703: 2345800, 60704: 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,046 | INFO     | --------------------------------------------------
[2026-01-13 17:01:37] 2026-01-13 22:00:37,047 | INFO     | 
[2026-01-13 17:01:37] 2026-01-13 22:00:37,047 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 17:01:37] 2026-01-13 22:00:37,100 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,102 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 17:01:37] 2026-01-13 22:00:37,103 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 17:01:37] 2026-01-13 22:00:37,103 | INFO     | job 6968277477 has completed (purged errors)
[2026-01-13 17:01:37] 2026-01-13 22:00:37,103 | INFO     | overall cleanup function is called
[2026-01-13 17:01:37] 2026-01-13 22:00:38,120 | INFO     | --- collectZombieJob: --- 10, [2160856]
[2026-01-13 17:01:37] 2026-01-13 22:00:38,120 | INFO     | zombie collector waiting for pid 2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:38,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 17:01:37] 2026-01-13 22:00:38,121 | INFO     | collected zombie processes
[2026-01-13 17:01:37] 2026-01-13 22:00:38,121 | INFO     | will attempt to kill all subprocesses of pid=2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:38,481 | INFO     | process IDs to be killed: [2160856] (in reverse order)
[2026-01-13 17:01:37] 2026-01-13 22:00:38,553 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 17:01:37] 2026-01-13 22:00:38,553 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 17:01:37] 2026-01-13 22:00:38,561 | INFO     | did not find any defunct processes belonging to 2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:38,567 | INFO     | did not find any defunct processes belonging to 2160856
[2026-01-13 17:01:37] 2026-01-13 22:00:38,568 | INFO     | ready for new job
[2026-01-13 17:01:37] 2026-01-13 22:00:38,568 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 17:01:37] 2026-01-13 22:00:38,577 | INFO     | ***************************************
[2026-01-13 17:01:37] 2026-01-13 22:00:38,631 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 17:01:37] 2026-01-13 22:00:38,631 | INFO     | ***************************************
[2026-01-13 17:01:37] 2026-01-13 22:00:38,631 | INFO     | 
[2026-01-13 17:01:37] 2026-01-13 22:00:38,633 | INFO     | architecture information:
[2026-01-13 17:01:37] 2026-01-13 22:00:38,655 | INFO     | executing command: cat /etc/os-release
[2026-01-13 17:01:37] 2026-01-13 22:00:38,672 | INFO     | cat /etc/os-release:
[2026-01-13 17:01:37] NAME="CentOS Linux"
[2026-01-13 17:01:37] VERSION="7 (Core)"
[2026-01-13 17:01:37] ID="centos"
[2026-01-13 17:01:37] ID_LIKE="rhel fedora"
[2026-01-13 17:01:37] VERSION_ID="7"
[2026-01-13 17:01:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 17:01:37] ANSI_COLOR="0;31"
[2026-01-13 17:01:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 17:01:37] HOME_URL="https://www.centos.org/"
[2026-01-13 17:01:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 17:01:37] 
[2026-01-13 17:01:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 17:01:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 17:01:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 17:01:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 17:01:37] 
[2026-01-13 17:01:37] 2026-01-13 22:00:38,672 | INFO     | ***************************************
[2026-01-13 17:01:37] 2026-01-13 22:00:39,177 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 17:01:37] 2026-01-13 22:00:39,210 | INFO     | sufficient remaining disk space (51442089984 B)
[2026-01-13 17:01:37] 2026-01-13 22:00:39,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 17:01:37] 2026-01-13 22:00:39,210 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 17:01:37] 2026-01-13 22:00:39,210 | INFO     | update_server=False
[2026-01-13 17:01:37] 2026-01-13 22:00:39,210 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 17:01:37] 2026-01-13 22:00:39,231 | INFO     | all data control threads have been joined
[2026-01-13 17:01:37] 2026-01-13 22:00:39,491 | INFO     | all job control threads have been joined
[2026-01-13 17:01:37] 2026-01-13 22:00:39,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 17:01:37] 2026-01-13 22:00:39,515 | INFO     | aborting loop
[2026-01-13 17:01:37] 2026-01-13 22:00:39,749 | INFO     | all payload control threads have been joined
[2026-01-13 17:01:37] 2026-01-13 22:00:40,215 | INFO     | [job] retrieve thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,222 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,236 | INFO     | [data] control thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,423 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 17:01:37] 2026-01-13 22:00:40,500 | INFO     | [job] control thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,521 | INFO     | [job] job monitor thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,562 | INFO     | [data] copytool_in thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,655 | INFO     | [job] validate thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,733 | INFO     | [payload] failed_post thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,754 | INFO     | [payload] control thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,889 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:40,997 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:41,041 | INFO     | [payload] validate_post thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:41,491 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:41,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 17:01:37] 2026-01-13 22:00:41,641 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 17:01:37] 2026-01-13 22:00:42,430 | INFO     | [data] copytool_out thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:42,646 | INFO     | [job] queue monitor thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:00:45,647 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 17:01:37] 2026-01-13 22:01:09,970 | INFO     | PID=2153365 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 17:01:37] 2026-01-13 22:01:09,971 | INFO     | .. there are 8 such processes running
[2026-01-13 17:01:37] 2026-01-13 22:01:09,972 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 17:01:37] 2026-01-13 22:01:09,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 17:01:37] 2026-01-13 22:01:09,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 17:01:37] 2026-01-13 22:01:31,027 | INFO     | [monitor] cgroup control has ended
[2026-01-13 17:01:37] 2026-01-13 22:01:32,127 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292593870656)>', '<ExcThread(monitor, started 140292246185728)>']
[2026-01-13 17:01:37] 2026-01-13 22:01:32,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 17:01:37] 2026-01-13 22:01:32,137 | INFO     | [monitor] control thread has ended
[2026-01-13 17:01:37] 2026-01-13 22:01:37,153 | INFO     | all workflow threads have been joined
[2026-01-13 17:01:37] 2026-01-13 22:01:37,153 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 17:01:37] 2026-01-13 22:01:37,159 | INFO     | traces error code: 0
[2026-01-13 17:01:37] 2026-01-13 22:01:37,160 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 17:01:37] 2026-01-13 22:01:37,573 [wrapper] ==== pilot stdout END ====
[2026-01-13 17:01:37] 2026-01-13 22:01:37,576 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 17:01:37] 2026-01-13 22:01:37,579 [wrapper] pilotpid: 2153365
[2026-01-13 17:01:37] 2026-01-13 22:01:37,582 [wrapper] Pilot exit status: 0
[2026-01-13 17:01:37] 2026-01-13 22:01:37,598 [wrapper] pandaids: 6968277477
[2026-01-13 17:01:37] 2026-01-13 22:01:37,649 [wrapper] cleanup supervisor_pilot 3639746 2153366
[2026-01-13 17:01:37] 2026-01-13 22:01:37,652 [wrapper] Test setup, not cleaning
[2026-01-13 17:01:37] 2026-01-13 22:01:37,654 [wrapper] apfmon messages muted
[2026-01-13 17:01:37] 2026-01-13 22:01:37,657 [wrapper] ==== wrapper stdout END ====
[2026-01-13 17:01:37] 2026-01-13 22:01:37,659 [wrapper] ==== wrapper stderr END ====
[2026-01-13 17:01:37]  *** Error codes and diagnostics ***
[2026-01-13 17:01:37]     "exeErrorCode": 0,
[2026-01-13 17:01:37]     "exeErrorDiag": "",
[2026-01-13 17:01:37]     "pilotErrorCode": 0,
[2026-01-13 17:01:37]     "pilotErrorDiag": "",
[2026-01-13 17:01:37]  *** Listing of results directory ***
[2026-01-13 17:01:37] total 614084
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 23:28 pilot3.tar.gz
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas      5112 Jan 13 00:03 queuedata.json
[2026-01-13 17:01:37] -rwx------. 1 boincer umatlas     36322 Jan 13 00:04 runpilot2-wrapper.sh
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas       100 Jan 13 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 17:01:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 13 00:06 run_atlas
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas       105 Jan 13 00:06 job.xml
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas 317665836 Jan 13 00:06 EVNT.48188654._000006.pool.root.1
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 00:06 start_atlas.sh
[2026-01-13 17:01:37] drwxrwx--x. 2 boincer umatlas      4096 Jan 13 00:06 shared
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas    592411 Jan 13 00:06 input.tar.gz
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas         0 Jan 13 00:06 boinc_lockfile
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas      2629 Jan 13 00:06 pandaJob.out
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas        57 Jan 13 00:06 setup.sh.local
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas    987755 Jan 13 00:07 agis_schedconf.cvmfs.json
[2026-01-13 17:01:37] drwx------. 5 boincer umatlas      4096 Jan 13 00:07 pilot3
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas      6659 Jan 13 16:58 init_data.xml
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas 289642635 Jan 13 16:59 HITS.48188657._000135.pool.root.1
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas       531 Jan 13 16:59 boinc_task_state.xml
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas      1038 Jan 13 17:00 memory_monitor_summary.json
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas   1516246 Jan 13 17:00 agis_ddmendpoints.agis.ALL.json
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas   1161235 Jan 13 17:00 log.48188657._000135.job.log.tgz.1
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas      7812 Jan 13 17:00 heartbeat.json
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas        95 Jan 13 17:01 pilot_heartbeat.json
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 17:01 boinc_mmap_file
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas        28 Jan 13 17:01 wrapper_checkpoint.txt
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas      4823 Jan 13 17:01 pilotlog.txt
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas   7632109 Jan 13 17:01 log.48188657._000135.job.log.1
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas       357 Jan 13 17:01 output.list
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas       620 Jan 13 17:01 runtime_log
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas   8816640 Jan 13 17:01 result.tar.gz
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas      9340 Jan 13 17:01 runtime_log.err
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas       658 Jan 13 17:01 mc1NDmWllz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfxnKDmwmf4Sm.diag
[2026-01-13 17:01:37] -rw-r--r--. 1 boincer umatlas     21645 Jan 13 17:01 stderr.txt
[2026-01-13 17:01:37] HITS file was successfully produced:
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas 289642635 Jan 13 16:59 shared/HITS.pool.root.1
[2026-01-13 17:01:37]  *** Contents of shared directory: ***
[2026-01-13 17:01:37] total 602296
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas 317665836 Jan 13 00:06 ATLAS.root_0
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 13 00:06 start_atlas.sh
[2026-01-13 17:01:37] -rw-r--r--. 2 boincer umatlas    592411 Jan 13 00:06 input.tar.gz
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas 289642635 Jan 13 16:59 HITS.pool.root.1
[2026-01-13 17:01:37] -rw-------. 1 boincer umatlas   8816640 Jan 13 17:01 result.tar.gz
17:01:39 (2148040): run_atlas exited; CPU time 75299.327721
17:01:39 (2148040): called boinc_finish(0)

</stderr_txt>
]]>

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