Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:38 (2812): wrapper (7.7.26015): starting
10:17:38 (2812): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 10:17:38] Arguments: --nthreads 8
[2026-01-13 10:17:38] Threads: 8
[2026-01-13 10:17:38] Checking for CVMFS
[2026-01-13 10:17:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 10:17:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 10:17:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 10:17:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 10:17:41] 2.11.2.0 27806 40967 128124 155083 3 60 16883661 25165824 96 130560 0 19614586 99.819 11530000 3600 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-13 10:17:41] CVMFS is ok
[2026-01-13 10:17:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 10:17:41] Checking for apptainer binary...
[2026-01-13 10:17:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 10:17:41] Running /usr/bin/apptainer --version
[2026-01-13 10:17:41] apptainer version 1.3.2-1.el7
[2026-01-13 10:17:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 10:18:06] cg-vwn467.simple-grid.lan
[2026-01-13 10:18:06] apptainer works
[2026-01-13 10:18:06] Set ATHENA_PROC_NUMBER=8
[2026-01-13 10:18:06] Set ATHENA_CORE_NUMBER=8
[2026-01-13 10:18:06] Starting ATLAS job with PandaID=6968277459
[2026-01-13 10:18:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 16:12:09]  *** The last 200 lines of the pilot log: ***
[2026-01-13 16:12:09] 2026-01-13 15:10:55,221 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 16:12:09] 2026-01-13 15:10:55,221 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 16:12:09] 2026-01-13 15:10:55,222 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 16:12:09] 2026-01-13 15:10:55,222 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 16:12:09] 2026-01-13 15:10:55,234 | INFO     | fitting pss+swap vs Time
[2026-01-13 16:12:09] 2026-01-13 15:10:55,235 | INFO     | sum of square deviations: 11347200663.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,238 | INFO     | sum of deviations: 125559315504.49995
[2026-01-13 16:12:09] 2026-01-13 15:10:55,238 | INFO     | mean x: 1768306770.5
[2026-01-13 16:12:09] 2026-01-13 15:10:55,238 | INFO     | mean y: 2529522.5993975904
[2026-01-13 16:12:09] 2026-01-13 15:10:55,239 | INFO     | intersect: -19564180743.653423
[2026-01-13 16:12:09] 2026-01-13 15:10:55,239 | INFO     | chi2: 6.859297316043113
[2026-01-13 16:12:09] 2026-01-13 15:10:55,240 | INFO     | sum of square deviations: 10842205148.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,243 | INFO     | sum of deviations: 146150161446.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,243 | INFO     | mean x: 1768306618.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,243 | INFO     | mean y: 2535656.911314985
[2026-01-13 16:12:09] 2026-01-13 15:10:55,243 | INFO     | intersect: -23833786768.1816
[2026-01-13 16:12:09] 2026-01-13 15:10:55,244 | INFO     | chi2: 6.131923611502651
[2026-01-13 16:12:09] 2026-01-13 15:10:55,244 | INFO     | current chi2=6.131923611502651 (change=10.604201436774266 %)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,244 | INFO     | right removable region: 326
[2026-01-13 16:12:09] 2026-01-13 15:10:55,245 | INFO     | sum of square deviations: 10842205148.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,248 | INFO     | sum of deviations: 10476132863.000008
[2026-01-13 16:12:09] 2026-01-13 15:10:55,248 | INFO     | mean x: 1768306923.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,248 | INFO     | mean y: 2564250.489296636
[2026-01-13 16:12:09] 2026-01-13 15:10:55,249 | INFO     | intersect: -1706038198.4625134
[2026-01-13 16:12:09] 2026-01-13 15:10:55,249 | INFO     | chi2: 2.4529601610743375
[2026-01-13 16:12:09] 2026-01-13 15:10:55,249 | INFO     | current chi2=2.4529601610743375 (change=64.23890016638958 %)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,250 | INFO     | sum of square deviations: 10352419220.5
[2026-01-13 16:12:09] 2026-01-13 15:10:55,253 | INFO     | sum of deviations: -50312418597.49999
[2026-01-13 16:12:09] 2026-01-13 15:10:55,253 | INFO     | mean x: 1768307075.5
[2026-01-13 16:12:09] 2026-01-13 15:10:55,253 | INFO     | mean y: 2583100.462732919
[2026-01-13 16:12:09] 2026-01-13 15:10:55,253 | INFO     | intersect: 8596497614.212502
[2026-01-13 16:12:09] 2026-01-13 15:10:55,254 | INFO     | chi2: 1.000504901782115
[2026-01-13 16:12:09] 2026-01-13 15:10:55,254 | INFO     | current chi2=1.000504901782115 (change=59.21234606012036 %)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,254 | INFO     | sum of square deviations: 9877610318.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,258 | INFO     | sum of deviations: -55975303180.999985
[2026-01-13 16:12:09] 2026-01-13 15:10:55,258 | INFO     | mean x: 1768307228.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,258 | INFO     | mean y: 2584904.977917981
[2026-01-13 16:12:09] 2026-01-13 15:10:55,258 | INFO     | intersect: 10023382447.88962
[2026-01-13 16:12:09] 2026-01-13 15:10:55,259 | INFO     | chi2: 0.9706706603455861
[2026-01-13 16:12:09] 2026-01-13 15:10:55,259 | INFO     | current chi2=0.9706706603455861 (change=2.9819185676539606 %)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,259 | INFO     | left removable region: 30
[2026-01-13 16:12:09] 2026-01-13 15:10:55,259 | INFO     | sum of square deviations: 8041713570.0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,262 | INFO     | sum of deviations: -5662955831.499998
[2026-01-13 16:12:09] 2026-01-13 15:10:55,262 | INFO     | mean x: 1768307502.5
[2026-01-13 16:12:09] 2026-01-13 15:10:55,263 | INFO     | mean y: 2582269.8277027025
[2026-01-13 16:12:09] 2026-01-13 15:10:55,263 | INFO     | intersect: 1247820264.9391816
[2026-01-13 16:12:09] 2026-01-13 15:10:55,263 | INFO     | chi2: 0.1171821983283191
[2026-01-13 16:12:09] 2026-01-13 15:10:55,263 | INFO     | current memory leak: -0.70 B/s (using 296 data points, chi2=0.12)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,270 | INFO     | could have reported an average CPU frequency of 2250 MHz (14 samples)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,270 | INFO     | ..............................
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . Timing measurements:
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . get job = 0 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . initial setup = 9 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . payload setup = 147 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . stage-in = 0 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . payload execution = 20423 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . stage-out = 4 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | . log creation = 1 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,271 | INFO     | ..............................
[2026-01-13 16:12:09] 2026-01-13 15:10:55,429 | INFO     | time since job start (20913s) is within the limit (349056.0s)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,463 | INFO     | 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,463 | INFO     | job summary report
[2026-01-13 16:12:09] 2026-01-13 15:10:55,463 | INFO     | --------------------------------------------------
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | PanDA job id: 6968277459
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | task id: 48188657
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | errors: (none)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | pilot state: finished 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | transexitcode: 0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | exeerrorcode: 0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | exeerrordiag: 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | exitcode: 0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,464 | INFO     | exitmsg: OK
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | cpuconsumptiontime: 76938 s
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | nevents: 400
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | neventsw: 0
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | pid: 13026
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | pgrp: 13026
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | corecount: 8
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | event service: False
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | sizes: {0: 2283898, 1: 2284153, 12: 2284153, 23: 2284181, 33: 2284209, 44: 2284265, 55: 2284421, 66: 2284449, 76: 2284477, 87: 2284533, 98: 2284561, 106: 2285131, 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | --------------------------------------------------
[2026-01-13 16:12:09] 2026-01-13 15:10:55,465 | INFO     | 
[2026-01-13 16:12:09] 2026-01-13 15:10:55,466 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-13 16:12:09] 2026-01-13 15:10:55,774 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,774 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,774 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,774 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,774 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,775 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | job 6968277459 has completed (purged errors)
[2026-01-13 16:12:09] 2026-01-13 15:10:55,776 | INFO     | overall cleanup function is called
[2026-01-13 16:12:09] 2026-01-13 15:10:56,543 | INFO     | PID=6556 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-13 16:12:09] 2026-01-13 15:10:56,543 | INFO     | .. there are 2 such processes running
[2026-01-13 16:12:09] 2026-01-13 15:10:56,785 | INFO     | --- collectZombieJob: --- 10, [13026]
[2026-01-13 16:12:09] 2026-01-13 15:10:56,785 | INFO     | zombie collector waiting for pid 13026
[2026-01-13 16:12:09] 2026-01-13 15:10:56,786 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 16:12:09] 2026-01-13 15:10:56,786 | INFO     | collected zombie processes
[2026-01-13 16:12:09] 2026-01-13 15:10:56,786 | INFO     | will attempt to kill all subprocesses of pid=13026
[2026-01-13 16:12:09] 2026-01-13 15:10:56,858 | INFO     | process IDs to be killed: [13026] (in reverse order)
[2026-01-13 16:12:09] 2026-01-13 15:10:57,720 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 16:12:09] 2026-01-13 15:10:57,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 16:12:09] 2026-01-13 15:10:57,722 | INFO     | did not find any defunct processes belonging to 13026
[2026-01-13 16:12:09] 2026-01-13 15:10:57,724 | INFO     | did not find any defunct processes belonging to 13026
[2026-01-13 16:12:09] 2026-01-13 15:10:57,724 | INFO     | ready for new job
[2026-01-13 16:12:09] 2026-01-13 15:10:57,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 16:12:09] 2026-01-13 15:10:57,727 | INFO     | ***************************************
[2026-01-13 16:12:09] 2026-01-13 15:10:57,727 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 16:12:09] 2026-01-13 15:10:57,727 | INFO     | ***************************************
[2026-01-13 16:12:09] 2026-01-13 15:10:57,727 | INFO     | 
[2026-01-13 16:12:09] 2026-01-13 15:10:57,728 | INFO     | pilot is running in a VM
[2026-01-13 16:12:09] 2026-01-13 15:10:57,728 | INFO     | architecture information:
[2026-01-13 16:12:09] 2026-01-13 15:10:57,743 | INFO     | executing command: cat /etc/os-release
[2026-01-13 16:12:09] 2026-01-13 15:10:58,040 | INFO     | cat /etc/os-release:
[2026-01-13 16:12:09] NAME="CentOS Linux"
[2026-01-13 16:12:09] VERSION="7 (Core)"
[2026-01-13 16:12:09] ID="centos"
[2026-01-13 16:12:09] ID_LIKE="rhel fedora"
[2026-01-13 16:12:09] VERSION_ID="7"
[2026-01-13 16:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 16:12:09] ANSI_COLOR="0;31"
[2026-01-13 16:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 16:12:09] HOME_URL="https://www.centos.org/"
[2026-01-13 16:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 16:12:09] 
[2026-01-13 16:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 16:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 16:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 16:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 16:12:09] 
[2026-01-13 16:12:09] 2026-01-13 15:10:58,041 | INFO     | ***************************************
[2026-01-13 16:12:09] 2026-01-13 15:10:58,544 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-13 16:12:09] 2026-01-13 15:10:58,777 | INFO     | sufficient remaining disk space (497212719104 B)
[2026-01-13 16:12:09] 2026-01-13 15:10:58,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 16:12:09] 2026-01-13 15:10:58,777 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 16:12:09] 2026-01-13 15:10:58,777 | INFO     | update_server=False
[2026-01-13 16:12:09] 2026-01-13 15:10:58,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 16:12:09] 2026-01-13 15:10:59,020 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 16:12:09] 2026-01-13 15:10:59,020 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 16:12:09] 2026-01-13 15:10:59,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:12:09] 2026-01-13 15:10:59,021 | INFO     | will abort loop
[2026-01-13 16:12:09] 2026-01-13 15:10:59,131 | INFO     | all data control threads have been joined
[2026-01-13 16:12:09] 2026-01-13 15:10:59,215 | INFO     | all job control threads have been joined
[2026-01-13 16:12:09] 2026-01-13 15:10:59,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 16:12:09] 2026-01-13 15:10:59,786 | INFO     | [job] retrieve thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:10:59,800 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,018 | INFO     | [payload] validate_post thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,026 | INFO     | [job] job monitor thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,123 | INFO     | [data] copytool_in thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,137 | INFO     | [data] control thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,142 | INFO     | all payload control threads have been joined
[2026-01-13 16:12:09] 2026-01-13 15:11:00,184 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,221 | INFO     | [job] control thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,339 | INFO     | [job] validate thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:00,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 16:12:09] 2026-01-13 15:11:00,859 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,148 | INFO     | [payload] control thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,301 | INFO     | [payload] failed_post thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,431 | INFO     | [job] queue monitor thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,729 | INFO     | [data] copytool_out thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:01,751 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 16:12:09] 2026-01-13 15:11:05,760 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 16:12:09] 2026-01-13 15:11:28,661 | INFO     | PID=6556 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-13 16:12:09] 2026-01-13 15:11:28,661 | INFO     | .. there are 2 such processes running
[2026-01-13 16:12:09] 2026-01-13 15:11:28,663 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 16:12:09] 2026-01-13 15:11:28,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 16:12:09] 2026-01-13 15:11:28,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 16:12:09] 2026-01-13 15:11:57,840 | INFO     | [monitor] cgroup control has ended
[2026-01-13 16:12:09] 2026-01-13 15:11:58,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140222896826176)>', '<ExcThread(monitor, started 140222025168640)>']
[2026-01-13 16:12:09] 2026-01-13 15:11:58,843 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 16:12:09] 2026-01-13 15:11:58,843 | INFO     | [monitor] control thread has ended
[2026-01-13 16:12:09] 2026-01-13 15:12:03,682 | INFO     | all workflow threads have been joined
[2026-01-13 16:12:09] 2026-01-13 15:12:03,682 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 16:12:09] 2026-01-13 15:12:03,683 | INFO     | traces error code: 0
[2026-01-13 16:12:09] 2026-01-13 15:12:03,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 16:12:09] 2026-01-13 15:12:04,135 [wrapper] ==== pilot stdout END ====
[2026-01-13 16:12:09] 2026-01-13 15:12:04,230 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 16:12:09] 2026-01-13 15:12:04,323 [wrapper] pilotpid: 6556
[2026-01-13 16:12:09] 2026-01-13 15:12:04,431 [wrapper] Pilot exit status: 0
[2026-01-13 16:12:09] 2026-01-13 15:12:04,961 [wrapper] pandaids: 6968277459
[2026-01-13 16:12:09] 2026-01-13 15:12:06,066 [wrapper] cleanup supervisor_pilot 12239 6557
[2026-01-13 16:12:09] 2026-01-13 15:12:06,263 [wrapper] Test setup, not cleaning
[2026-01-13 16:12:09] 2026-01-13 15:12:06,355 [wrapper] apfmon messages muted
[2026-01-13 16:12:09] 2026-01-13 15:12:06,413 [wrapper] ==== wrapper stdout END ====
[2026-01-13 16:12:09] 2026-01-13 15:12:06,467 [wrapper] ==== wrapper stderr END ====
[2026-01-13 16:12:09]  *** Error codes and diagnostics ***
[2026-01-13 16:12:09]     "exeErrorCode": 0,
[2026-01-13 16:12:09]     "exeErrorDiag": "",
[2026-01-13 16:12:09]     "pilotErrorCode": 0,
[2026-01-13 16:12:09]     "pilotErrorDiag": "",
[2026-01-13 16:12:09]  *** Listing of results directory ***
[2026-01-13 16:12:09] total 612316
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc    579449 Jan 13 05:28 pilot3.tar.gz
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc      5112 Jan 13 06:03 queuedata.json
[2026-01-13 16:12:09] -rwx------. 1 boinc boinc     36322 Jan 13 06:04 runpilot2-wrapper.sh
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc       100 Jan 13 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 16:12:09] -rwxr-xr-x. 1 boinc boinc      7986 Jan 13 10:17 run_atlas
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc       105 Jan 13 10:17 job.xml
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc 320687367 Jan 13 10:17 EVNT.48188654._000005.pool.root.1
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc     15847 Jan 13 10:17 start_atlas.sh
[2026-01-13 16:12:09] drwxrwx--x. 2 boinc boinc        68 Jan 13 10:17 shared
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc    592414 Jan 13 10:17 input.tar.gz
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc      6390 Jan 13 10:17 init_data.xml
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc         0 Jan 13 10:17 boinc_lockfile
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc      2629 Jan 13 10:18 pandaJob.out
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc    993000 Jan 13 10:22 agis_schedconf.cvmfs.json
[2026-01-13 16:12:09] drwx------. 5 boinc boinc      4096 Jan 13 10:22 pilot3
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc 295676109 Jan 13 16:07 HITS.48188657._000117.pool.root.1
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc       531 Jan 13 16:07 boinc_task_state.xml
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc      1012 Jan 13 16:08 memory_monitor_summary.json
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc   1516246 Jan 13 16:08 agis_ddmendpoints.agis.ALL.json
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc    596764 Jan 13 16:08 log.48188657._000117.job.log.tgz.1
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc      7762 Jan 13 16:10 heartbeat.json
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc        95 Jan 13 16:11 pilot_heartbeat.json
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc        28 Jan 13 16:11 wrapper_checkpoint.txt
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc      8192 Jan 13 16:11 boinc_mmap_file
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc      5069 Jan 13 16:12 pilotlog.txt
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc   2776700 Jan 13 16:12 log.48188657._000117.job.log.1
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc       357 Jan 13 16:12 output.list
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc       620 Jan 13 16:12 runtime_log
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc   3389440 Jan 13 16:12 result.tar.gz
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc      8817 Jan 13 16:12 runtime_log.err
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc       657 Jan 13 16:12 H8gNDmWllz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYxnKDmIgZlIn.diag
[2026-01-13 16:12:09] -rw-r--r--. 1 boinc boinc     20846 Jan 13 16:12 stderr.txt
[2026-01-13 16:12:09] HITS file was successfully produced:
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc 295676109 Jan 13 16:07 shared/HITS.pool.root.1
[2026-01-13 16:12:09]  *** Contents of shared directory: ***
[2026-01-13 16:12:09] total 605828
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc 320687367 Jan 13 10:17 ATLAS.root_0
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc     15847 Jan 13 10:17 start_atlas.sh
[2026-01-13 16:12:09] -rw-r--r--. 2 boinc boinc    592414 Jan 13 10:17 input.tar.gz
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc 295676109 Jan 13 16:07 HITS.pool.root.1
[2026-01-13 16:12:09] -rw-------. 1 boinc boinc   3389440 Jan 13 16:12 result.tar.gz
16:12:10 (2812): run_atlas exited; CPU time 77126.124922
16:12:10 (2812): called boinc_finish(0)

</stderr_txt>
]]>

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