Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:29 (3502369): wrapper (7.7.26015): starting
10:56:29 (3502369): wrapper: running run_atlas (--nthreads 3)
[2026-01-13 10:56:29] Arguments: --nthreads 3
[2026-01-13 10:56:29] Threads: 3
[2026-01-13 10:56:29] Checking for CVMFS
[2026-01-13 10:56:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 10:56:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 10:56:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 10:56:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 10:56:29] 2.9.2.0 3271287 1505 76476 155083 0 57 22603190 36864001 0 130560 0 617018 99.983 50710 10492 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 10:56:29] CVMFS is ok
[2026-01-13 10:56:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 10:56:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 10:56:29] Further information can be found at the LHC@home message board.
[2026-01-13 10:56:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 10:56:29] Checking for apptainer binary...
[2026-01-13 10:56:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 10:56:29] Running /usr/bin/apptainer --version
[2026-01-13 10:56:29] apptainer version 1.4.1-1.1
[2026-01-13 10:56:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 10:56:29] magicA246
[2026-01-13 10:56:29] apptainer works
[2026-01-13 10:56:29] Set ATHENA_PROC_NUMBER=3
[2026-01-13 10:56:29] Set ATHENA_CORE_NUMBER=3
[2026-01-13 10:56:29] Starting ATLAS job with PandaID=6968277501
[2026-01-13 10:56:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 12:55:51]  *** The last 200 lines of the pilot log: ***
[2026-01-13 12:55:51] 2026-01-13 11:55:04,928 | INFO     | zombie collector waiting for pid 3512558
[2026-01-13 12:55:51] 2026-01-13 11:55:04,929 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 12:55:51] 2026-01-13 11:55:04,929 | INFO     | collected zombie processes
[2026-01-13 12:55:51] 2026-01-13 11:55:04,929 | INFO     | will attempt to kill all subprocesses of pid=3512558
[2026-01-13 12:55:51] 2026-01-13 11:55:04,972 | INFO     | process IDs to be killed: [3512558] (in reverse order)
[2026-01-13 12:55:51] 2026-01-13 11:55:04,999 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 12:55:51] 2026-01-13 11:55:04,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 12:55:51] 2026-01-13 11:55:05,000 | INFO     | did not find any defunct processes belonging to 3512558
[2026-01-13 12:55:51] 2026-01-13 11:55:05,001 | INFO     | did not find any defunct processes belonging to 3512558
[2026-01-13 12:55:51] 2026-01-13 11:55:05,001 | INFO     | ready for new job
[2026-01-13 12:55:51] 2026-01-13 11:55:05,001 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 12:55:51] 2026-01-13 11:55:05,002 | INFO     | ***************************************
[2026-01-13 12:55:51] 2026-01-13 11:55:05,002 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 12:55:51] 2026-01-13 11:55:05,002 | INFO     | ***************************************
[2026-01-13 12:55:51] 2026-01-13 11:55:05,002 | INFO     | 
[2026-01-13 12:55:51] 2026-01-13 11:55:05,003 | INFO     | architecture information:
[2026-01-13 12:55:51] 2026-01-13 11:55:05,003 | INFO     | executing command: cat /etc/os-release
[2026-01-13 12:55:51] 2026-01-13 11:55:05,012 | INFO     | cat /etc/os-release:
[2026-01-13 12:55:51] NAME="CentOS Linux"
[2026-01-13 12:55:51] VERSION="7 (Core)"
[2026-01-13 12:55:51] ID="centos"
[2026-01-13 12:55:51] ID_LIKE="rhel fedora"
[2026-01-13 12:55:51] VERSION_ID="7"
[2026-01-13 12:55:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 12:55:51] ANSI_COLOR="0;31"
[2026-01-13 12:55:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 12:55:51] HOME_URL="https://www.centos.org/"
[2026-01-13 12:55:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 12:55:51] 
[2026-01-13 12:55:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 12:55:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 12:55:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 12:55:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 12:55:51] 
[2026-01-13 12:55:51] 2026-01-13 11:55:05,013 | INFO     | ***************************************
[2026-01-13 12:55:51] 2026-01-13 11:55:05,516 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | INFO     | sufficient remaining disk space (383669764096 B)
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | INFO     | update_server=False
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 12:55:51] 2026-01-13 11:55:05,529 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 12:55:51] 2026-01-13 11:55:05,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:55:51] 2026-01-13 11:55:05,530 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-13 12:55:51] 2026-01-13 11:55:05,530 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 12:55:51] 2026-01-13 11:55:05,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 12:55:51] 2026-01-13 11:55:05,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 12:55:51] 2026-01-13 11:55:05,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 12:55:51] 2026-01-13 11:55:06,055 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:55:51] 2026-01-13 11:55:06,056 | INFO     | aborting loop
[2026-01-13 12:55:51] 2026-01-13 11:55:06,113 | INFO     | all payload control threads have been joined
[2026-01-13 12:55:51] 2026-01-13 11:55:06,184 | INFO     | all data control threads have been joined
[2026-01-13 12:55:51] 2026-01-13 11:55:06,535 | INFO     | [job] retrieve thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:06,535 | INFO     | [job] queue monitor thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:06,587 | INFO     | all job control threads have been joined
[2026-01-13 12:55:51] 2026-01-13 11:55:06,872 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,061 | INFO     | [job] job monitor thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,119 | INFO     | [payload] control thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,190 | INFO     | [data] control thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,229 | INFO     | [data] copytool_in thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,394 | INFO     | [job] validate thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,502 | INFO     | [payload] validate_post thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,526 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,527 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,537 | INFO     | [data] copytool_out thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,593 | INFO     | [job] control thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:07,972 | INFO     | [payload] failed_post thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:09,536 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:15,652 | INFO     | job.realtimelogging is not enabled
[2026-01-13 12:55:51] 2026-01-13 11:55:16,658 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 12:55:51] 2026-01-13 11:55:44,474 | INFO     | [monitor] cgroup control has ended
[2026-01-13 12:55:51] 2026-01-13 11:55:46,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650732468032)>', '<ExcThread(monitor, started 139650073073408)>']
[2026-01-13 12:55:51] 2026-01-13 11:55:46,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 12:55:51] 2026-01-13 11:55:46,742 | INFO     | [monitor] control thread has ended
[2026-01-13 12:55:51] 2026-01-13 11:55:51,308 | INFO     | all workflow threads have been joined
[2026-01-13 12:55:51] 2026-01-13 11:55:51,308 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 12:55:51] 2026-01-13 11:55:51,308 | INFO     | traces error code: 0
[2026-01-13 12:55:51] 2026-01-13 11:55:51,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 12:55:51] 2026-01-13 11:55:51,364 [wrapper] ==== pilot stdout END ====
[2026-01-13 12:55:51] 2026-01-13 11:55:51,366 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 12:55:51] 2026-01-13 11:55:51,369 [wrapper] pilotpid: 3506105
[2026-01-13 12:55:51] 2026-01-13 11:55:51,371 [wrapper] Pilot exit status: 0
[2026-01-13 12:55:51] 2026-01-13 11:55:51,380 [wrapper] pandaids: 6968277501
[2026-01-13 12:55:51] 2026-01-13 11:55:51,398 [wrapper] cleanup supervisor_pilot 3527379 3506106
[2026-01-13 12:55:51] 2026-01-13 11:55:51,401 [wrapper] Test setup, not cleaning
[2026-01-13 12:55:51] 2026-01-13 11:55:51,403 [wrapper] apfmon messages muted
[2026-01-13 12:55:51] 2026-01-13 11:55:51,406 [wrapper] ==== wrapper stdout END ====
[2026-01-13 12:55:51] 2026-01-13 11:55:51,408 [wrapper] ==== wrapper stderr END ====
[2026-01-13 12:55:51]  *** Error codes and diagnostics ***
[2026-01-13 12:55:51]     "exeErrorCode": 0,
[2026-01-13 12:55:51]     "exeErrorDiag": "",
[2026-01-13 12:55:51]     "pilotErrorCode": 0,
[2026-01-13 12:55:51]     "pilotErrorDiag": "",
[2026-01-13 12:55:51]  *** Listing of results directory ***
[2026-01-13 12:55:51] total 604396
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc    579449 Jan 13 05:28 pilot3.tar.gz
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc      5112 Jan 13 06:03 queuedata.json
[2026-01-13 12:55:51] -rwx------ 1 boinc boinc     36322 Jan 13 06:04 runpilot2-wrapper.sh
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc       100 Jan 13 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 12:55:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 10:56 run_atlas
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc       105 Jan 13 10:56 job.xml
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc 317513510 Jan 13 10:56 EVNT.48188654._000007.pool.root.1
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc    592414 Jan 13 10:56 input.tar.gz
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc     15847 Jan 13 10:56 start_atlas.sh
[2026-01-13 12:55:51] drwxrwx--x 2 boinc boinc      4096 Jan 13 10:56 shared
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc         0 Jan 13 10:56 boinc_setup_complete
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc      6448 Jan 13 10:56 init_data.xml
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc         0 Jan 13 10:56 boinc_lockfile
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc      2629 Jan 13 10:56 pandaJob.out
[2026-01-13 12:55:51] -rw------- 1 boinc boinc    993000 Jan 13 10:56 agis_schedconf.cvmfs.json
[2026-01-13 12:55:51] -rw------- 1 boinc boinc   1516240 Jan 13 10:56 agis_ddmendpoints.agis.ALL.json
[2026-01-13 12:55:51] drwx------ 5 boinc boinc      4096 Jan 13 10:56 pilot3
[2026-01-13 12:55:51] -rw------- 1 boinc boinc        95 Jan 13 12:54 pilot_heartbeat.json
[2026-01-13 12:55:51] -rw------- 1 boinc boinc 294777390 Jan 13 12:54 HITS.48188657._000159.pool.root.1
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc       530 Jan 13 12:54 boinc_task_state.xml
[2026-01-13 12:55:51] -rw------- 1 boinc boinc      1015 Jan 13 12:54 memory_monitor_summary.json
[2026-01-13 12:55:51] -rw------- 1 boinc boinc    328969 Jan 13 12:54 log.48188657._000159.job.log.tgz.1
[2026-01-13 12:55:51] -rw------- 1 boinc boinc      7742 Jan 13 12:55 heartbeat.json
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc      8192 Jan 13 12:55 boinc_mmap_file
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc        27 Jan 13 12:55 wrapper_checkpoint.txt
[2026-01-13 12:55:51] -rw------- 1 boinc boinc      4628 Jan 13 12:55 pilotlog.txt
[2026-01-13 12:55:51] -rw------- 1 boinc boinc   1023861 Jan 13 12:55 log.48188657._000159.job.log.1
[2026-01-13 12:55:51] -rw------- 1 boinc boinc       357 Jan 13 12:55 output.list
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc       620 Jan 13 12:55 runtime_log
[2026-01-13 12:55:51] -rw------- 1 boinc boinc   1372160 Jan 13 12:55 result.tar.gz
[2026-01-13 12:55:51] -rw------- 1 boinc boinc       662 Jan 13 12:55 xXaMDmQllz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmh4hKDmpp4Wjm.diag
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc      8912 Jan 13 12:55 runtime_log.err
[2026-01-13 12:55:51] -rw-r--r-- 1 boinc boinc     10533 Jan 13 12:55 stderr.txt
[2026-01-13 12:55:51] HITS file was successfully produced:
[2026-01-13 12:55:51] -rw------- 1 boinc boinc 294777390 Jan 13 12:54 shared/HITS.pool.root.1
[2026-01-13 12:55:51]  *** Contents of shared directory: ***
[2026-01-13 12:55:51] total 599888
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc 317513510 Jan 13 10:56 ATLAS.root_0
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc    592414 Jan 13 10:56 input.tar.gz
[2026-01-13 12:55:51] -rw-r--r-- 2 boinc boinc     15847 Jan 13 10:56 start_atlas.sh
[2026-01-13 12:55:51] -rw------- 1 boinc boinc 294777390 Jan 13 12:54 HITS.pool.root.1
[2026-01-13 12:55:51] -rw------- 1 boinc boinc   1372160 Jan 13 12:55 result.tar.gz
12:55:52 (3502369): run_atlas exited; CPU time 20511.268239
12:55:52 (3502369): called boinc_finish(0)

</stderr_txt>
]]>

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