Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:34:48 (3084): wrapper (7.7.26015): starting
22:34:48 (3084): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 22:34:48] Arguments: --nthreads 8
[2026-01-12 22:34:48] Threads: 8
[2026-01-12 22:34:48] Checking for CVMFS
[2026-01-12 22:34:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 22:34:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 22:34:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 22:34:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 22:34:49] 2.11.2.0 2830 123055 115324 155075 2 58 15882024 20275200 1 130560 0 28204836 99.781 8558443 32968 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 22:34:49] CVMFS is ok
[2026-01-12 22:34:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 22:34:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 22:34:49] Further information can be found at the LHC@home message board.
[2026-01-12 22:34:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 22:34:49] Checking for apptainer binary...
[2026-01-12 22:34:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 22:34:49] Running /usr/bin/apptainer --version
[2026-01-12 22:34:49] apptainer version 1.3.2-1.el7
[2026-01-12 22:34:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 22:34:50] c-204-14.aglt2.org
[2026-01-12 22:34:50] apptainer works
[2026-01-12 22:34:50] Set ATHENA_PROC_NUMBER=8
[2026-01-12 22:34:50] Set ATHENA_CORE_NUMBER=8
[2026-01-12 22:34:50] Starting ATLAS job with PandaID=6967368379
[2026-01-12 22:34:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 23:28:21]  *** The last 200 lines of the pilot log: ***
[2026-01-12 23:28:21]  lfn=log.47962010._003345.job.log.tgz.1
[2026-01-12 23:28:21]  mtime=0
[2026-01-12 23:28:21]  protocol_id=None
[2026-01-12 23:28:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 23:28:21]  replicas=None
[2026-01-12 23:28:21]  scope=mc16_13TeV
[2026-01-12 23:28:21]  status=None
[2026-01-12 23:28:21]  status_code=0
[2026-01-12 23:28:21]  storage_token=
[2026-01-12 23:28:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6967368379/log.47962010._003345.job.log.tgz.1
[2026-01-12 23:28:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/36/c6/log.47962010._003345.job.log.tgz.1
[2026-01-12 23:28:21]  workdir=None
[2026-01-12 23:28:21] ]
[2026-01-12 23:28:21] 2026-01-13 04:27:40,114 | INFO     | transferring file log.47962010._003345.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967368379/log.47962010._003345.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 23:28:21] 2026-01-13 04:27:40,114 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967368379/log.47962010._003345.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003345.job
[2026-01-12 23:28:21] 2026-01-13 04:27:40,142 | INFO     | adding to output.list: log.47962010._003345.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/36/c6/log.47962010._003345.job.log.tgz.
[2026-01-12 23:28:21] 2026-01-13 04:27:40,143 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 23:28:21] 2026-01-13 04:27:40,143 | INFO     | summary of transferred files:
[2026-01-12 23:28:21] 2026-01-13 04:27:40,144 | INFO     |  -- lfn=log.47962010._003345.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 23:28:21] 2026-01-13 04:27:40,144 | INFO     | stage-out finished correctly
[2026-01-12 23:28:21] 2026-01-13 04:27:40,900 | INFO     | monitor loop #241: job 0:6967368379 is in state 'finished'
[2026-01-12 23:28:21] 2026-01-13 04:27:40,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:28:21] 2026-01-13 04:27:41,102 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 23:28:21] 2026-01-13 04:27:41,863 | INFO     | job 6967368379 has state=finished
[2026-01-12 23:28:21] 2026-01-13 04:27:41,864 | INFO     | preparing for final server update for job 6967368379 in state='finished'
[2026-01-12 23:28:21] 2026-01-13 04:27:41,864 | INFO     | this job has now completed (state=finished)
[2026-01-12 23:28:21] 2026-01-13 04:27:41,865 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 23:28:21] 2026-01-13 04:27:41,865 | INFO     | log transfer has been attempted: DONE
[2026-01-12 23:28:21] 2026-01-13 04:27:41,865 | INFO     | job 6967368379 has finished - writing final server update
[2026-01-12 23:28:21] 2026-01-13 04:27:41,865 | INFO     | total number of processed events: 50 (read)
[2026-01-12 23:28:21] 2026-01-13 04:27:41,867 | INFO     | executing command: lscpu
[2026-01-12 23:28:21] 2026-01-13 04:27:41,896 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 23:28:21] 2026-01-13 04:27:42,001 | INFO     | time since job start (3155s) is within the limit (349056.0s)
[2026-01-12 23:28:21] 2026-01-13 04:27:43,403 | INFO     | monitor loop #242: job 0:6967368379 is in state 'finished'
[2026-01-12 23:28:21] 2026-01-13 04:27:43,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:28:21] 2026-01-13 04:27:44,007 | INFO     | time since job start (3157s) is within the limit (349056.0s)
[2026-01-12 23:28:21] 2026-01-13 04:27:45,906 | INFO     | monitor loop #243: job 0:6967368379 is in state 'finished'
[2026-01-12 23:28:21] 2026-01-13 04:27:45,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 23:28:21] 2026-01-13 04:27:46,013 | INFO     | time since job start (3159s) is within the limit (349056.0s)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,017 | INFO     | time since job start (3161s) is within the limit (349056.0s)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,018 | INFO     | 3162s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-12 23:28:21] 2026-01-13 04:27:48,186 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 23:28:21] 2026-01-13 04:27:48,189 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2026-01-12 23:28:21] 2026-01-13 04:27:48,191 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967368379/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,193 | INFO     | extracted standard info from prmon json
[2026-01-12 23:28:21] 2026-01-13 04:27:48,193 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 23:28:21] 2026-01-13 04:27:48,193 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 23:28:21] 2026-01-13 04:27:48,195 | INFO     | fitting pss+swap vs Time
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | sum of square deviations: 28234105.111111127
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | sum of deviations: -8105145080.777778
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | mean x: 1768276987.4444444
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | mean y: 2882869.688888889
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | intersect: 507620938049.26245
[2026-01-12 23:28:21] 2026-01-13 04:27:48,196 | INFO     | chi2: 0.7306942252832201
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | current memory leak: -287.07 B/s (using 45 data points, chi2=0.73)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | could have reported an average CPU frequency of 1822 MHz (5 samples)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | ..............................
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | . Timing measurements:
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | . get job = 0 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,197 | INFO     | . initial setup = 2 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | . payload setup = 9 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | . stage-in = 0 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | . payload execution = 3121 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | . stage-out = 0 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | . log creation = 0 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,198 | INFO     | ..............................
[2026-01-12 23:28:21] 2026-01-13 04:27:48,288 | INFO     | 
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | job summary report
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | --------------------------------------------------
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | PanDA job id: 6967368379
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | task id: 47962010
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | errors: (none)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 23:28:21] 2026-01-13 04:27:48,289 | INFO     | pilot state: finished 
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | transexitcode: 0
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | exeerrorcode: 0
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | exeerrordiag: 
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | exitcode: 0
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | exitmsg: OK
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | cpuconsumptiontime: 19526 s
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | nevents: 50
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | neventsw: 0
[2026-01-12 23:28:21] 2026-01-13 04:27:48,290 | INFO     | pid: 14405
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | pgrp: 14405
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | corecount: 8
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | event service: False
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | sizes: {0: 2284397, 1: 2284596, 6: 2284858, 11: 2284886, 3134: 2311122, 3135: 2320116, 3136: 2320300, 3143: 2320578}
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | --------------------------------------------------
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | 
[2026-01-12 23:28:21] 2026-01-13 04:27:48,291 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 23:28:21] 2026-01-13 04:27:48,321 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,321 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,322 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,322 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,322 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,322 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,322 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,323 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,323 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,324 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,325 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 23:28:21] 2026-01-13 04:27:48,325 | INFO     | job 6967368379 has completed (purged errors)
[2026-01-12 23:28:21] 2026-01-13 04:27:48,325 | INFO     | overall cleanup function is called
[2026-01-12 23:28:21] 2026-01-13 04:27:49,340 | INFO     | --- collectZombieJob: --- 10, [14405]
[2026-01-12 23:28:21] 2026-01-13 04:27:49,340 | INFO     | zombie collector waiting for pid 14405
[2026-01-12 23:28:21] 2026-01-13 04:27:49,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 23:28:21] 2026-01-13 04:27:49,341 | INFO     | collected zombie processes
[2026-01-12 23:28:21] 2026-01-13 04:27:49,341 | INFO     | will attempt to kill all subprocesses of pid=14405
[2026-01-12 23:28:21] 2026-01-13 04:27:49,434 | INFO     | process IDs to be killed: [14405] (in reverse order)
[2026-01-12 23:28:21] 2026-01-13 04:27:49,496 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 23:28:21] 2026-01-13 04:27:49,497 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 23:28:21] 2026-01-13 04:27:49,500 | INFO     | did not find any defunct processes belonging to 14405
[2026-01-12 23:28:21] 2026-01-13 04:27:49,502 | INFO     | did not find any defunct processes belonging to 14405
[2026-01-12 23:28:21] 2026-01-13 04:27:49,502 | INFO     | ready for new job
[2026-01-12 23:28:21] 2026-01-13 04:27:49,503 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 23:28:21] 2026-01-13 04:27:49,504 | INFO     | ***************************************
[2026-01-12 23:28:21] 2026-01-13 04:27:49,504 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 23:28:21] 2026-01-13 04:27:49,504 | INFO     | ***************************************
[2026-01-12 23:28:21] 2026-01-13 04:27:49,504 | INFO     | 
[2026-01-12 23:28:21] 2026-01-13 04:27:49,505 | INFO     | architecture information:
[2026-01-12 23:28:21] 2026-01-13 04:27:49,506 | INFO     | executing command: cat /etc/os-release
[2026-01-12 23:28:21] 2026-01-13 04:27:49,525 | INFO     | cat /etc/os-release:
[2026-01-12 23:28:21] NAME="CentOS Linux"
[2026-01-12 23:28:21] VERSION="7 (Core)"
[2026-01-12 23:28:21] ID="centos"
[2026-01-12 23:28:21] ID_LIKE="rhel fedora"
[2026-01-12 23:28:21] VERSION_ID="7"
[2026-01-12 23:28:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 23:28:21] ANSI_COLOR="0;31"
[2026-01-12 23:28:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 23:28:21] HOME_URL="https://www.centos.org/"
[2026-01-12 23:28:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 23:28:21] 
[2026-01-12 23:28:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 23:28:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 23:28:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 23:28:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 23:28:21] 
[2026-01-12 23:28:21] 2026-01-13 04:27:49,525 | INFO     | ***************************************
[2026-01-12 23:28:21] 2026-01-13 04:27:50,028 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 23:28:21] 2026-01-13 04:27:50,048 | INFO     | sufficient remaining disk space (18375245824 B)
[2026-01-12 23:28:21] 2026-01-13 04:27:50,049 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 23:28:21] 2026-01-13 04:27:50,049 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 23:28:21] 2026-01-13 04:27:50,049 | INFO     | update_server=False
[2026-01-12 23:28:21] 2026-01-13 04:27:50,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 23:28:21] 2026-01-13 04:27:50,049 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 23:28:21] 2026-01-13 04:27:50,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 23:28:21] 2026-01-13 04:27:50,050 | INFO     | aborting loop
[2026-01-12 23:28:21] 2026-01-13 04:27:50,470 | INFO     | all data control threads have been joined
[2026-01-12 23:28:21] 2026-01-13 04:27:50,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 23:28:21] 2026-01-13 04:27:51,055 | INFO     | [job] retrieve thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,055 | INFO     | [job] queue monitor thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,056 | INFO     | [job] job monitor thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,143 | INFO     | all payload control threads have been joined
[2026-01-12 23:28:21] 2026-01-13 04:27:51,181 | INFO     | all job control threads have been joined
[2026-01-12 23:28:21] 2026-01-13 04:27:51,475 | INFO     | [data] control thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,508 | INFO     | [data] copytool_in thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,576 | INFO     | [payload] validate_post thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,613 | INFO     | [job] validate thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:51,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 23:28:21] 2026-01-13 04:27:51,953 | INFO     | [payload] failed_post thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,120 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,149 | INFO     | [payload] control thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,185 | INFO     | [job] control thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,215 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,292 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,345 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:52,760 | INFO     | [data] copytool_out thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:27:55,717 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 23:28:21] 2026-01-13 04:28:12,177 | INFO     | [monitor] cgroup control has ended
[2026-01-12 23:28:21] 2026-01-13 04:28:13,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860195977024)>', '<ExcThread(monitor, started 139859066861312)>']
[2026-01-12 23:28:21] 2026-01-13 04:28:18,191 | INFO     | all workflow threads have been joined
[2026-01-12 23:28:21] 2026-01-13 04:28:18,192 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 23:28:21] 2026-01-13 04:28:18,192 | INFO     | traces error code: 0
[2026-01-12 23:28:21] 2026-01-13 04:28:18,193 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 23:28:21] 2026-01-13 04:28:21,243 | INFO     | PID=7203 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 23:28:21] 2026-01-13 04:28:21,244 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 23:28:21] 2026-01-13 04:28:21,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 23:28:21] 2026-01-13 04:28:21,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 23:28:21] 2026-01-13 04:28:21,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 23:28:21] 2026-01-13 04:28:21,244 | INFO     | [monitor] control thread has ended
[2026-01-12 23:28:21] 2026-01-13 04:28:21,352 [wrapper] ==== pilot stdout END ====
[2026-01-12 23:28:21] 2026-01-13 04:28:21,356 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 23:28:21] 2026-01-13 04:28:21,361 [wrapper] pilotpid: 7203
[2026-01-12 23:28:21] 2026-01-13 04:28:21,366 [wrapper] Pilot exit status: 0
[2026-01-12 23:28:21] 2026-01-13 04:28:21,382 [wrapper] pandaids: 6967368379
[2026-01-12 23:28:21] 2026-01-13 04:28:21,426 [wrapper] cleanup supervisor_pilot  7421 7204
[2026-01-12 23:28:21] 2026-01-13 04:28:21,430 [wrapper] Test setup, not cleaning
[2026-01-12 23:28:21] 2026-01-13 04:28:21,435 [wrapper] apfmon messages muted
[2026-01-12 23:28:21] 2026-01-13 04:28:21,440 [wrapper] ==== wrapper stdout END ====
[2026-01-12 23:28:21] 2026-01-13 04:28:21,445 [wrapper] ==== wrapper stderr END ====
[2026-01-12 23:28:21]  *** Error codes and diagnostics ***
[2026-01-12 23:28:21]     "exeErrorCode": 0,
[2026-01-12 23:28:21]     "exeErrorDiag": "",
[2026-01-12 23:28:21]     "pilotErrorCode": 0,
[2026-01-12 23:28:21]     "pilotErrorDiag": "",
[2026-01-12 23:28:21]  *** Listing of results directory ***
[2026-01-12 23:28:21] total 432824
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 12:19 pilot3.tar.gz
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 12:49 queuedata.json
[2026-01-12 23:28:21] -rwx------ 1 boincer umatlas     36322 Jan 12 12:50 runpilot2-wrapper.sh
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas       100 Jan 12 22:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 23:28:21] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 22:34 run_atlas
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas       105 Jan 12 22:34 job.xml
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas 390344352 Jan 12 22:34 EVNT.47962006._000079.pool.root.1
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 22:34 start_atlas.sh
[2026-01-12 23:28:21] drwxrwx--x 2 boincer umatlas      4096 Jan 12 22:34 shared
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas    592615 Jan 12 22:34 input.tar.gz
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas         0 Jan 12 22:34 boinc_lockfile
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas      2889 Jan 12 22:34 pandaJob.out
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas        57 Jan 12 22:34 setup.sh.local
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas    987763 Jan 12 22:35 agis_schedconf.cvmfs.json
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas   1516240 Jan 12 22:35 agis_ddmendpoints.agis.ALL.json
[2026-01-12 23:28:21] drwx------ 5 boincer umatlas      4096 Jan 12 22:35 pilot3
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas       529 Jan 12 23:15 boinc_task_state.xml
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas      5909 Jan 12 23:21 init_data.xml
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas  45577802 Jan 12 23:27 HITS.47962010._003345.pool.root.1
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas      1052 Jan 12 23:27 memory_monitor_summary.json
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas   1197609 Jan 12 23:27 log.47962010._003345.job.log.tgz.1
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas        95 Jan 12 23:27 pilot_heartbeat.json
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas      8620 Jan 12 23:27 heartbeat.json
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 23:28 boinc_mmap_file
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas        27 Jan 12 23:28 wrapper_checkpoint.txt
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas       744 Jan 12 23:28 pilotlog.txt
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas    488588 Jan 12 23:28 log.47962010._003345.job.log.1
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas       353 Jan 12 23:28 output.list
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas       620 Jan 12 23:28 runtime_log
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas   1710080 Jan 12 23:28 result.tar.gz
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas      9342 Jan 12 23:28 runtime_log.err
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas       659 Jan 12 23:28 i5nNDmOEbz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVmnKDmqi2Gnn.diag
[2026-01-12 23:28:21] -rw-r--r-- 1 boincer umatlas     21760 Jan 12 23:28 stderr.txt
[2026-01-12 23:28:21] HITS file was successfully produced:
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas 45577802 Jan 12 23:27 shared/HITS.pool.root.1
[2026-01-12 23:28:21]  *** Contents of shared directory: ***
[2026-01-12 23:28:21] total 427976
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas 390344352 Jan 12 22:34 ATLAS.root_0
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 22:34 start_atlas.sh
[2026-01-12 23:28:21] -rw-r--r-- 2 boincer umatlas    592615 Jan 12 22:34 input.tar.gz
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas  45577802 Jan 12 23:27 HITS.pool.root.1
[2026-01-12 23:28:21] -rw------- 1 boincer umatlas   1710080 Jan 12 23:28 result.tar.gz
23:28:22 (3084): run_atlas exited; CPU time 19353.848466
23:28:22 (3084): called boinc_finish(0)

</stderr_txt>
]]>

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