Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:06:40 (3864): wrapper (7.7.26015): starting
20:06:40 (3864): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 20:06:40] Arguments: --nthreads 12
[2026-01-12 20:06:40] Threads: 12
[2026-01-12 20:06:40] Checking for CVMFS
[2026-01-12 20:06:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 20:06:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 20:06:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 20:06:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 20:06:40] 2.11.2.0 2945 356120 97140 155071 0 57 19304681 20275200 1 130560 2 151061748 99.951 21431114 16994 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 20:06:40] CVMFS is ok
[2026-01-12 20:06:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 20:06:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 20:06:40] Further information can be found at the LHC@home message board.
[2026-01-12 20:06:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 20:06:40] Checking for apptainer binary...
[2026-01-12 20:06:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 20:06:40] Running /usr/bin/apptainer --version
[2026-01-12 20:06:40] apptainer version 1.3.2-1.el7
[2026-01-12 20:06:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 20:06:41] c-205-2.aglt2.org
[2026-01-12 20:06:41] apptainer works
[2026-01-12 20:06:41] Set ATHENA_PROC_NUMBER=12
[2026-01-12 20:06:41] Set ATHENA_CORE_NUMBER=12
[2026-01-12 20:06:41] Starting ATLAS job with PandaID=6962017330
[2026-01-12 20:06:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 21:47:11]  *** The last 200 lines of the pilot log: ***
[2026-01-12 21:47:11]  is_tar=False
[2026-01-12 21:47:11]  lfn=log.47898826._009993.job.log.tgz.1
[2026-01-12 21:47:11]  mtime=0
[2026-01-12 21:47:11]  protocol_id=None
[2026-01-12 21:47:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 21:47:11]  replicas=None
[2026-01-12 21:47:11]  scope=mc23_13p6TeV
[2026-01-12 21:47:11]  status=None
[2026-01-12 21:47:11]  status_code=0
[2026-01-12 21:47:11]  storage_token=
[2026-01-12 21:47:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6962017330/log.47898826._009993.job.log.tgz.1
[2026-01-12 21:47:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/19/log.47898826._009993.job.log.tgz.1
[2026-01-12 21:47:11]  workdir=None
[2026-01-12 21:47:11] ]
[2026-01-12 21:47:11] 2026-01-13 02:45:59,798 | INFO     | transferring file log.47898826._009993.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6962017330/log.47898826._009993.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 21:47:11] 2026-01-13 02:45:59,798 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6962017330/log.47898826._009993.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._009993.job
[2026-01-12 21:47:11] 2026-01-13 02:45:59,820 | INFO     | adding to output.list: log.47898826._009993.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e6/19/log.47898826._009993.job.log.tg
[2026-01-12 21:47:11] 2026-01-13 02:45:59,821 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 21:47:11] 2026-01-13 02:45:59,821 | INFO     | summary of transferred files:
[2026-01-12 21:47:11] 2026-01-13 02:45:59,821 | INFO     |  -- lfn=log.47898826._009993.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 21:47:11] 2026-01-13 02:45:59,821 | INFO     | stage-out finished correctly
[2026-01-12 21:47:11] 2026-01-13 02:45:59,906 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 21:47:11] 2026-01-13 02:45:59,985 | INFO     | job 6962017330 has state=finished
[2026-01-12 21:47:11] 2026-01-13 02:45:59,985 | INFO     | preparing for final server update for job 6962017330 in state='finished'
[2026-01-12 21:47:11] 2026-01-13 02:46:00,048 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-12 21:47:11] 2026-01-13 02:46:00,048 | INFO     | this job has now completed (state=finished)
[2026-01-12 21:47:11] 2026-01-13 02:46:00,048 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 21:47:11] 2026-01-13 02:46:00,048 | INFO     | log transfer has been attempted: DONE
[2026-01-12 21:47:11] 2026-01-13 02:46:00,048 | INFO     | job 6962017330 has finished - writing final server update
[2026-01-12 21:47:11] 2026-01-13 02:46:00,049 | INFO     | total number of processed events: 400 (read)
[2026-01-12 21:47:11] 2026-01-13 02:46:00,050 | INFO     | executing command: lscpu
[2026-01-12 21:47:11] 2026-01-13 02:46:00,073 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 21:47:11] 2026-01-13 02:46:01,146 | INFO     | time since job start (5945s) is within the limit (174528.0s)
[2026-01-12 21:47:11] 2026-01-13 02:46:03,152 | INFO     | time since job start (5947s) is within the limit (174528.0s)
[2026-01-12 21:47:11] 2026-01-13 02:46:03,989 | WARNING  | process 13964 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 21:47:11] 2026-01-13 02:46:03,989 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962017330/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 21:47:11] 2026-01-13 02:46:04,077 | INFO     | number of running child processes to parent process 13964: 1
[2026-01-12 21:47:11] 2026-01-13 02:46:04,077 | INFO     | maximum number of monitored processes: 6
[2026-01-12 21:47:11] 2026-01-13 02:46:05,157 | INFO     | time since job start (5949s) is within the limit (174528.0s)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,847 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 21:47:11] 2026-01-13 02:46:05,850 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-12 21:47:11] 2026-01-13 02:46:05,852 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6962017330/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,852 | INFO     | extracted standard info from prmon json
[2026-01-12 21:47:11] 2026-01-13 02:46:05,853 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 21:47:11] 2026-01-13 02:46:05,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 21:47:11] 2026-01-13 02:46:05,853 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 21:47:11] 2026-01-13 02:46:05,853 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 21:47:11] 2026-01-13 02:46:05,855 | INFO     | fitting pss+swap vs Time
[2026-01-12 21:47:11] 2026-01-13 02:46:05,855 | INFO     | sum of square deviations: 226022842.5
[2026-01-12 21:47:11] 2026-01-13 02:46:05,855 | INFO     | sum of deviations: -2567176002.5
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | mean x: 1768269465.5
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | mean y: 2688484.6555555556
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | intersect: 20086760021.739697
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | chi2: 0.04045482025524658
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | current memory leak: -11.36 B/s (using 90 data points, chi2=0.04)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,856 | INFO     | could have reported an average CPU frequency of 2123 MHz (7 samples)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | ..............................
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . Timing measurements:
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . get job = 0 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . initial setup = 2 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . payload setup = 7 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . stage-in = 0 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . payload execution = 5914 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . stage-out = 0 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,857 | INFO     | . log creation = 0 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,858 | INFO     | ..............................
[2026-01-12 21:47:11] 2026-01-13 02:46:05,937 | INFO     | 
[2026-01-12 21:47:11] 2026-01-13 02:46:05,937 | INFO     | job summary report
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | --------------------------------------------------
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | PanDA job id: 6962017330
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | task id: 47898826
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | errors: (none)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 21:47:11] 2026-01-13 02:46:05,938 | INFO     | pilot state: finished 
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | transexitcode: 0
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | exeerrorcode: 0
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | exeerrordiag: 
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | exitcode: 0
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | exitmsg: OK
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | cpuconsumptiontime: 65753 s
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | nevents: 400
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | neventsw: 0
[2026-01-12 21:47:11] 2026-01-13 02:46:05,939 | INFO     | pid: 13964
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | pgrp: 13964
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | corecount: 12
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | event service: False
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | sizes: {0: 2283793, 1: 2283992, 6: 2284254, 11: 2284282, 5925: 2311002, 5927: 2320184, 5933: 2320322}
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | --------------------------------------------------
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | 
[2026-01-12 21:47:11] 2026-01-13 02:46:05,940 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 21:47:11] 2026-01-13 02:46:05,962 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,962 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,962 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,962 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,965 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,965 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 21:47:11] 2026-01-13 02:46:05,965 | INFO     | job 6962017330 has completed (purged errors)
[2026-01-12 21:47:11] 2026-01-13 02:46:05,966 | INFO     | overall cleanup function is called
[2026-01-12 21:47:11] 2026-01-13 02:46:06,974 | INFO     | --- collectZombieJob: --- 10, [13964]
[2026-01-12 21:47:11] 2026-01-13 02:46:06,974 | INFO     | zombie collector waiting for pid 13964
[2026-01-12 21:47:11] 2026-01-13 02:46:06,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 21:47:11] 2026-01-13 02:46:06,974 | INFO     | collected zombie processes
[2026-01-12 21:47:11] 2026-01-13 02:46:06,974 | INFO     | will attempt to kill all subprocesses of pid=13964
[2026-01-12 21:47:11] 2026-01-13 02:46:07,068 | INFO     | process IDs to be killed: [13964] (in reverse order)
[2026-01-12 21:47:11] 2026-01-13 02:46:07,121 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 21:47:11] 2026-01-13 02:46:07,121 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 21:47:11] 2026-01-13 02:46:07,125 | INFO     | did not find any defunct processes belonging to 13964
[2026-01-12 21:47:11] 2026-01-13 02:46:07,128 | INFO     | did not find any defunct processes belonging to 13964
[2026-01-12 21:47:11] 2026-01-13 02:46:07,128 | INFO     | ready for new job
[2026-01-12 21:47:11] 2026-01-13 02:46:07,128 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 21:47:11] 2026-01-13 02:46:07,130 | INFO     | ***************************************
[2026-01-12 21:47:11] 2026-01-13 02:46:07,130 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 21:47:11] 2026-01-13 02:46:07,130 | INFO     | ***************************************
[2026-01-12 21:47:11] 2026-01-13 02:46:07,130 | INFO     | 
[2026-01-12 21:47:11] 2026-01-13 02:46:07,131 | INFO     | architecture information:
[2026-01-12 21:47:11] 2026-01-13 02:46:07,131 | INFO     | executing command: cat /etc/os-release
[2026-01-12 21:47:11] 2026-01-13 02:46:07,145 | INFO     | cat /etc/os-release:
[2026-01-12 21:47:11] NAME="CentOS Linux"
[2026-01-12 21:47:11] VERSION="7 (Core)"
[2026-01-12 21:47:11] ID="centos"
[2026-01-12 21:47:11] ID_LIKE="rhel fedora"
[2026-01-12 21:47:11] VERSION_ID="7"
[2026-01-12 21:47:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 21:47:11] ANSI_COLOR="0;31"
[2026-01-12 21:47:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 21:47:11] HOME_URL="https://www.centos.org/"
[2026-01-12 21:47:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 21:47:11] 
[2026-01-12 21:47:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 21:47:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 21:47:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 21:47:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 21:47:11] 
[2026-01-12 21:47:11] 2026-01-13 02:46:07,146 | INFO     | ***************************************
[2026-01-12 21:47:11] 2026-01-13 02:46:07,649 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 21:47:11] 2026-01-13 02:46:07,665 | INFO     | sufficient remaining disk space (29379002368 B)
[2026-01-12 21:47:11] 2026-01-13 02:46:07,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 21:47:11] 2026-01-13 02:46:07,665 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 21:47:11] 2026-01-13 02:46:07,666 | INFO     | update_server=False
[2026-01-12 21:47:11] 2026-01-13 02:46:07,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 21:47:11] 2026-01-13 02:46:07,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:47:11] 2026-01-13 02:46:07,667 | INFO     | aborting loop
[2026-01-12 21:47:11] 2026-01-13 02:46:07,667 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:47:11] 2026-01-13 02:46:07,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 21:47:11] 2026-01-13 02:46:07,983 | INFO     | all job control threads have been joined
[2026-01-12 21:47:11] 2026-01-13 02:46:08,583 | INFO     | all data control threads have been joined
[2026-01-12 21:47:11] 2026-01-13 02:46:08,672 | INFO     | [job] retrieve thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:08,672 | INFO     | [job] job monitor thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:08,673 | INFO     | [job] queue monitor thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:08,843 | INFO     | all payload control threads have been joined
[2026-01-12 21:47:11] 2026-01-13 02:46:08,864 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:08,988 | INFO     | [job] control thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,009 | INFO     | [payload] validate_post thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,037 | INFO     | [data] copytool_in thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,152 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,565 | INFO     | [payload] failed_post thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,588 | INFO     | [data] control thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,773 | INFO     | [job] validate thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,825 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,849 | INFO     | [payload] control thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,849 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:09,921 | INFO     | [data] copytool_out thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:10,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 21:47:11] 2026-01-13 02:46:14,499 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 21:47:11] 2026-01-13 02:46:38,357 | INFO     | PID=7550 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 21:47:11] 2026-01-13 02:46:38,357 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 21:47:11] 2026-01-13 02:46:38,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 21:47:11] 2026-01-13 02:46:38,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 21:47:11] 2026-01-13 02:47:05,956 | INFO     | [monitor] cgroup control has ended
[2026-01-12 21:47:11] 2026-01-13 02:47:06,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140072313698112)>', '<ExcThread(monitor, started 140071399307008)>']
[2026-01-12 21:47:11] 2026-01-13 02:47:06,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 21:47:11] 2026-01-13 02:47:06,470 | INFO     | [monitor] control thread has ended
[2026-01-12 21:47:11] 2026-01-13 02:47:11,446 | INFO     | all workflow threads have been joined
[2026-01-12 21:47:11] 2026-01-13 02:47:11,446 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 21:47:11] 2026-01-13 02:47:11,446 | INFO     | traces error code: 0
[2026-01-12 21:47:11] 2026-01-13 02:47:11,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 21:47:11] 2026-01-13 02:47:11,535 [wrapper] ==== pilot stdout END ====
[2026-01-12 21:47:11] 2026-01-13 02:47:11,538 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 21:47:11] 2026-01-13 02:47:11,543 [wrapper] pilotpid: 7550
[2026-01-12 21:47:11] 2026-01-13 02:47:11,547 [wrapper] Pilot exit status: 0
[2026-01-12 21:47:11] 2026-01-13 02:47:11,563 [wrapper] pandaids: 6962017330
[2026-01-12 21:47:11] 2026-01-13 02:47:11,611 [wrapper] cleanup supervisor_pilot 13344 7551
[2026-01-12 21:47:11] 2026-01-13 02:47:11,615 [wrapper] Test setup, not cleaning
[2026-01-12 21:47:11] 2026-01-13 02:47:11,619 [wrapper] apfmon messages muted
[2026-01-12 21:47:11] 2026-01-13 02:47:11,623 [wrapper] ==== wrapper stdout END ====
[2026-01-12 21:47:11] 2026-01-13 02:47:11,627 [wrapper] ==== wrapper stderr END ====
[2026-01-12 21:47:11]  *** Error codes and diagnostics ***
[2026-01-12 21:47:11]     "exeErrorCode": 0,
[2026-01-12 21:47:11]     "exeErrorDiag": "",
[2026-01-12 21:47:11]     "pilotErrorCode": 0,
[2026-01-12 21:47:11]     "pilotErrorDiag": "",
[2026-01-12 21:47:11]  *** Listing of results directory ***
[2026-01-12 21:47:11] total 440036
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas    579449 Jan  7 10:25 pilot3.tar.gz
[2026-01-12 21:47:11] -rwx------ 1 boincer umatlas     36322 Jan  7 10:35 runpilot2-wrapper.sh
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas      5112 Jan  7 10:36 queuedata.json
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas       100 Jan 12 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 21:47:11] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 20:06 run_atlas
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas       105 Jan 12 20:06 job.xml
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas 224433219 Jan 12 20:06 EVNT.47898824._000503.pool.root.1
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 20:06 start_atlas.sh
[2026-01-12 21:47:11] drwxrwx--x 2 boincer umatlas      4096 Jan 12 20:06 shared
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas    592395 Jan 12 20:06 input.tar.gz
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas         0 Jan 12 20:06 boinc_lockfile
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas      2516 Jan 12 20:06 pandaJob.out
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas        57 Jan 12 20:06 setup.sh.local
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas    987763 Jan 12 20:06 agis_schedconf.cvmfs.json
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas   1516240 Jan 12 20:06 agis_ddmendpoints.agis.ALL.json
[2026-01-12 21:47:11] drwx------ 5 boincer umatlas      4096 Jan 12 20:06 pilot3
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas 219747517 Jan 12 21:45 HITS.47898826._009993.pool.root.1
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas       529 Jan 12 21:45 boinc_task_state.xml
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas      5952 Jan 12 21:45 init_data.xml
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas      1045 Jan 12 21:45 memory_monitor_summary.json
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas    403187 Jan 12 21:45 log.47898826._009993.job.log.tgz.1
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas      7842 Jan 12 21:46 heartbeat.json
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas        95 Jan 12 21:46 pilot_heartbeat.json
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas        27 Jan 12 21:46 wrapper_checkpoint.txt
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 21:46 boinc_mmap_file
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas      4745 Jan 12 21:47 pilotlog.txt
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas    845169 Jan 12 21:47 log.47898826._009993.job.log.1
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas       357 Jan 12 21:47 output.list
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas       620 Jan 12 21:47 runtime_log
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas   1269760 Jan 12 21:47 result.tar.gz
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas      9339 Jan 12 21:47 runtime_log.err
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas       658 Jan 12 21:47 n7FKDm4jkx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7IdKDmFwQhNn.diag
[2026-01-12 21:47:11] -rw-r--r-- 1 boincer umatlas     21587 Jan 12 21:47 stderr.txt
[2026-01-12 21:47:11] HITS file was successfully produced:
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas 219747517 Jan 12 21:45 shared/HITS.pool.root.1
[2026-01-12 21:47:11]  *** Contents of shared directory: ***
[2026-01-12 21:47:11] total 435616
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas 224433219 Jan 12 20:06 ATLAS.root_0
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 20:06 start_atlas.sh
[2026-01-12 21:47:11] -rw-r--r-- 2 boincer umatlas    592395 Jan 12 20:06 input.tar.gz
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas 219747517 Jan 12 21:45 HITS.pool.root.1
[2026-01-12 21:47:11] -rw------- 1 boincer umatlas   1269760 Jan 12 21:47 result.tar.gz
21:47:13 (3864): run_atlas exited; CPU time 65741.183792
21:47:13 (3864): called boinc_finish(0)

</stderr_txt>
]]>

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