Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:32:00 (2231916): wrapper (7.7.26015): starting
19:32:00 (2231916): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 19:32:00] Arguments: --nthreads 8
[2026-01-12 19:32:00] Threads: 8
[2026-01-12 19:32:00] Checking for CVMFS
[2026-01-12 19:32:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 19:32:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 19:32:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 19:32:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 19:32:01] 2.13.3.0 11250 98453 340912 155071 1 220 24678000 32935937 15653 16776704 0 288091888 99.474 399643816 40043 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 19:32:01] CVMFS is ok
[2026-01-12 19:32:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 19:32:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 19:32:01] Further information can be found at the LHC@home message board.
[2026-01-12 19:32:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 19:32:01] Checking for apptainer binary...
[2026-01-12 19:32:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 19:32:01] Running /usr/bin/apptainer --version
[2026-01-12 19:32:01] apptainer version 1.4.5-2.el9
[2026-01-12 19:32:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 19:32:02] c6-2-29-1.aglt2.org
[2026-01-12 19:32:02] apptainer works
[2026-01-12 19:32:02] Set ATHENA_PROC_NUMBER=8
[2026-01-12 19:32:02] Set ATHENA_CORE_NUMBER=8
[2026-01-12 19:32:02] Starting ATLAS job with PandaID=6968009847
[2026-01-12 19:32:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:00:04 (2231916): BOINC client no longer exists - exiting
21:00:04 (2231916): timer handler: client dead, exiting
21:13:44 (2450658): wrapper (7.7.26015): starting
21:13:44 (2450658): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 21:13:44] Arguments: --nthreads 8
[2026-01-12 21:13:44] Threads: 8
[2026-01-12 21:13:44] This job has been restarted, cleaning up previous attempt
[2026-01-12 21:13:44] Checking for CVMFS
[2026-01-12 21:13:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 21:13:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 21:13:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 21:13:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 21:13:45] 2.13.3.0 11250 98555 339016 155072 3 84 25606719 32935936 15313 16776704 0 288248352 99.473 399905979 40041 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 21:13:45] CVMFS is ok
[2026-01-12 21:13:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 21:13:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 21:13:45] Further information can be found at the LHC@home message board.
[2026-01-12 21:13:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 21:13:45] Checking for apptainer binary...
[2026-01-12 21:13:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 21:13:45] Running /usr/bin/apptainer --version
[2026-01-12 21:13:45] apptainer version 1.4.5-2.el9
[2026-01-12 21:13:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 21:13:45] c6-2-29-1.aglt2.org
[2026-01-12 21:13:45] apptainer works
[2026-01-12 21:13:45] Set ATHENA_PROC_NUMBER=8
[2026-01-12 21:13:45] Set ATHENA_CORE_NUMBER=8
[2026-01-12 21:13:45] Starting ATLAS job with PandaID=6968009847
[2026-01-12 21:13:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 10:01:35]  *** The last 200 lines of the pilot log: ***
[2026-01-13 10:01:35] 2026-01-13 15:00:59,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 10:01:35] 2026-01-13 15:01:00,965 | INFO     | time since job start (46025s) is within the limit (349056.0s)
[2026-01-13 10:01:35] 2026-01-13 15:01:01,904 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-13 10:01:35] 2026-01-13 15:01:01,908 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3000.3980714285726
[2026-01-13 10:01:35] 2026-01-13 15:01:01,931 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6968009847/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 10:01:35] 2026-01-13 15:01:01,949 | INFO     | extracted standard info from prmon json
[2026-01-13 10:01:35] 2026-01-13 15:01:01,950 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 10:01:35] 2026-01-13 15:01:01,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 10:01:35] 2026-01-13 15:01:01,950 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 10:01:35] 2026-01-13 15:01:01,950 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 10:01:35] 2026-01-13 15:01:01,996 | INFO     | fitting pss+swap vs Time
[2026-01-13 10:01:35] 2026-01-13 15:01:01,998 | INFO     | sum of square deviations: 132918199237.5397
[2026-01-13 10:01:35] 2026-01-13 15:01:02,020 | INFO     | sum of deviations: 29704806081.974846
[2026-01-13 10:01:35] 2026-01-13 15:01:02,021 | INFO     | mean x: 1768293431.0994694
[2026-01-13 10:01:35] 2026-01-13 15:01:02,021 | INFO     | mean y: 2608188.1870026523
[2026-01-13 10:01:35] 2026-01-13 15:01:02,021 | INFO     | intersect: -392573312.6770618
[2026-01-13 10:01:35] 2026-01-13 15:01:02,022 | INFO     | chi2: 2.0964156808656047
[2026-01-13 10:01:35] 2026-01-13 15:01:02,027 | INFO     | sum of square deviations: 130291525053.23071
[2026-01-13 10:01:35] 2026-01-13 15:01:02,045 | INFO     | sum of deviations: 77786427566.39389
[2026-01-13 10:01:35] 2026-01-13 15:01:02,046 | INFO     | mean x: 1768293278.6034713
[2026-01-13 10:01:35] 2026-01-13 15:01:02,052 | INFO     | mean y: 2610964.1562082777
[2026-01-13 10:01:35] 2026-01-13 15:01:02,052 | INFO     | intersect: -1053092520.5948855
[2026-01-13 10:01:35] 2026-01-13 15:01:02,053 | INFO     | chi2: 1.4060642147319617
[2026-01-13 10:01:35] 2026-01-13 15:01:02,053 | INFO     | current chi2=1.4060642147319617 (change=32.93008502247983 %)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,054 | INFO     | sum of square deviations: 127699643286.61148
[2026-01-13 10:01:35] 2026-01-13 15:01:02,077 | INFO     | sum of deviations: 75524412932.58475
[2026-01-13 10:01:35] 2026-01-13 15:01:02,077 | INFO     | mean x: 1768293126.1061828
[2026-01-13 10:01:35] 2026-01-13 15:01:02,077 | INFO     | mean y: 2610831.068548387
[2026-01-13 10:01:35] 2026-01-13 15:01:02,077 | INFO     | intersect: -1043197103.9008074
[2026-01-13 10:01:35] 2026-01-13 15:01:02,078 | INFO     | chi2: 1.4059449307580374
[2026-01-13 10:01:35] 2026-01-13 15:01:02,078 | INFO     | current chi2=1.4059449307580374 (change=0.008483536717211367 %)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,078 | INFO     | right removable region: 743
[2026-01-13 10:01:35] 2026-01-13 15:01:02,079 | INFO     | sum of square deviations: 130291249333.23068
[2026-01-13 10:01:35] 2026-01-13 15:01:02,101 | INFO     | sum of deviations: -85175359758.50069
[2026-01-13 10:01:35] 2026-01-13 15:01:02,102 | INFO     | mean x: 1768293583.6034713
[2026-01-13 10:01:35] 2026-01-13 15:01:02,102 | INFO     | mean y: 2614839.038718291
[2026-01-13 10:01:35] 2026-01-13 15:01:02,102 | INFO     | intersect: 1158602235.835134
[2026-01-13 10:01:35] 2026-01-13 15:01:02,103 | INFO     | chi2: 0.8236257133532391
[2026-01-13 10:01:35] 2026-01-13 15:01:02,103 | INFO     | current chi2=0.8236257133532391 (change=60.712671591295965 %)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,104 | INFO     | sum of square deviations: 127699183102.61154
[2026-01-13 10:01:35] 2026-01-13 15:01:02,126 | INFO     | sum of deviations: -103705149206.24054
[2026-01-13 10:01:35] 2026-01-13 15:01:02,126 | INFO     | mean x: 1768293736.1061828
[2026-01-13 10:01:35] 2026-01-13 15:01:02,126 | INFO     | mean y: 2615925.813172043
[2026-01-13 10:01:35] 2026-01-13 15:01:02,126 | INFO     | intersect: 1438656167.3235497
[2026-01-13 10:01:35] 2026-01-13 15:01:02,127 | INFO     | chi2: 0.7842614612800022
[2026-01-13 10:01:35] 2026-01-13 15:01:02,127 | INFO     | current chi2=0.7842614612800022 (change=4.7793860044719425 %)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,128 | INFO     | left removable region: 20
[2026-01-13 10:01:35] 2026-01-13 15:01:02,128 | INFO     | sum of square deviations: 117188323543.33609
[2026-01-13 10:01:35] 2026-01-13 15:01:02,150 | INFO     | sum of deviations: -40184482595.76779
[2026-01-13 10:01:35] 2026-01-13 15:01:02,150 | INFO     | mean x: 1768293705.6141078
[2026-01-13 10:01:35] 2026-01-13 15:01:02,150 | INFO     | mean y: 2617652.5850622407
[2026-01-13 10:01:35] 2026-01-13 15:01:02,151 | INFO     | intersect: 608974715.2081034
[2026-01-13 10:01:35] 2026-01-13 15:01:02,151 | INFO     | chi2: 0.08220334309630266
[2026-01-13 10:01:35] 2026-01-13 15:01:02,152 | INFO     | current memory leak: -0.34 B/s (using 723 data points, chi2=0.08)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,153 | INFO     | could have reported an average CPU frequency of 3023 MHz (28 samples)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,153 | INFO     | ..............................
[2026-01-13 10:01:35] 2026-01-13 15:01:02,153 | INFO     | . Timing measurements:
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . get job = 0 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . initial setup = 1 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . payload setup = 6 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . stage-in = 0 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . payload execution = 45975 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,157 | INFO     | . stage-out = 4 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,158 | INFO     | . log creation = 0 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,158 | INFO     | ..............................
[2026-01-13 10:01:35] 2026-01-13 15:01:02,392 | INFO     | 
[2026-01-13 10:01:35] 2026-01-13 15:01:02,392 | INFO     | job summary report
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | --------------------------------------------------
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | PanDA job id: 6968009847
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | task id: 48188673
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | errors: (none)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | pilot state: finished 
[2026-01-13 10:01:35] 2026-01-13 15:01:02,404 | INFO     | transexitcode: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | exeerrorcode: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | exeerrordiag: 
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | exitcode: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | exitmsg: OK
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | cpuconsumptiontime: 58687 s
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | nevents: 400
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | neventsw: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | pid: 2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | pgrp: 2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | corecount: 8
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | event service: False
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | sizes: {0: 2284128, 1: 2284128, 6: 2284418, 11: 2284446, 45987: 2329587, 45992: 2338585, 45995: 2338769, 46011: 2338963}
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | --------------------------------------------------
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | 
[2026-01-13 10:01:35] 2026-01-13 15:01:02,405 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 10:01:35] 2026-01-13 15:01:02,468 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | job 6968009847 has completed (purged errors)
[2026-01-13 10:01:35] 2026-01-13 15:01:02,470 | INFO     | overall cleanup function is called
[2026-01-13 10:01:35] 2026-01-13 15:01:03,495 | INFO     | --- collectZombieJob: --- 10, [2481066]
[2026-01-13 10:01:35] 2026-01-13 15:01:03,495 | INFO     | zombie collector waiting for pid 2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:03,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 10:01:35] 2026-01-13 15:01:03,495 | INFO     | collected zombie processes
[2026-01-13 10:01:35] 2026-01-13 15:01:03,495 | INFO     | will attempt to kill all subprocesses of pid=2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:04,078 | INFO     | process IDs to be killed: [2481066] (in reverse order)
[2026-01-13 10:01:35] 2026-01-13 15:01:04,448 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 10:01:35] 2026-01-13 15:01:04,449 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 10:01:35] 2026-01-13 15:01:04,493 | INFO     | did not find any defunct processes belonging to 2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:04,521 | INFO     | did not find any defunct processes belonging to 2481066
[2026-01-13 10:01:35] 2026-01-13 15:01:04,522 | INFO     | ready for new job
[2026-01-13 10:01:35] 2026-01-13 15:01:04,522 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 10:01:35] 2026-01-13 15:01:04,529 | INFO     | ***************************************
[2026-01-13 10:01:35] 2026-01-13 15:01:04,530 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 10:01:35] 2026-01-13 15:01:04,530 | INFO     | ***************************************
[2026-01-13 10:01:35] 2026-01-13 15:01:04,530 | INFO     | 
[2026-01-13 10:01:35] 2026-01-13 15:01:04,537 | INFO     | architecture information:
[2026-01-13 10:01:35] 2026-01-13 15:01:04,538 | INFO     | executing command: cat /etc/os-release
[2026-01-13 10:01:35] 2026-01-13 15:01:04,597 | INFO     | cat /etc/os-release:
[2026-01-13 10:01:35] NAME="CentOS Linux"
[2026-01-13 10:01:35] VERSION="7 (Core)"
[2026-01-13 10:01:35] ID="centos"
[2026-01-13 10:01:35] ID_LIKE="rhel fedora"
[2026-01-13 10:01:35] VERSION_ID="7"
[2026-01-13 10:01:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 10:01:35] ANSI_COLOR="0;31"
[2026-01-13 10:01:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 10:01:35] HOME_URL="https://www.centos.org/"
[2026-01-13 10:01:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 10:01:35] 
[2026-01-13 10:01:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 10:01:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 10:01:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 10:01:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 10:01:35] 
[2026-01-13 10:01:35] 2026-01-13 15:01:04,598 | INFO     | ***************************************
[2026-01-13 10:01:35] 2026-01-13 15:01:05,101 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 10:01:35] 2026-01-13 15:01:05,160 | INFO     | sufficient remaining disk space (72370618368 B)
[2026-01-13 10:01:35] 2026-01-13 15:01:05,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 10:01:35] 2026-01-13 15:01:05,161 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 10:01:35] 2026-01-13 15:01:05,161 | INFO     | update_server=False
[2026-01-13 10:01:35] 2026-01-13 15:01:05,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 10:01:35] 2026-01-13 15:01:05,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 10:01:35] 2026-01-13 15:01:05,735 | INFO     | all data control threads have been joined
[2026-01-13 10:01:35] 2026-01-13 15:01:05,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 10:01:35] 2026-01-13 15:01:05,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 10:01:35] 2026-01-13 15:01:05,794 | INFO     | aborting loop
[2026-01-13 10:01:35] 2026-01-13 15:01:05,956 | INFO     | all job control threads have been joined
[2026-01-13 10:01:35] 2026-01-13 15:01:06,167 | INFO     | [job] retrieve thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,199 | INFO     | all payload control threads have been joined
[2026-01-13 10:01:35] 2026-01-13 15:01:06,340 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,348 | INFO     | [data] copytool_in thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,741 | INFO     | [data] control thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,764 | INFO     | [job] validate thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,790 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,800 | INFO     | [job] job monitor thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,863 | INFO     | [payload] failed_post thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,863 | INFO     | [payload] validate_post thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:06,982 | INFO     | [job] control thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:07,205 | INFO     | [payload] control thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:07,342 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:07,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 10:01:35] 2026-01-13 15:01:07,640 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:07,770 | INFO     | [data] copytool_out thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:08,427 | INFO     | [job] queue monitor thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:09,707 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 10:01:35] 2026-01-13 15:01:20,275 | INFO     | [monitor] cgroup control has ended
[2026-01-13 10:01:35] 2026-01-13 15:01:20,918 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152789456704)>', '<ExcThread(monitor, started 140152512939776)>']
[2026-01-13 10:01:35] 2026-01-13 15:01:25,944 | INFO     | all workflow threads have been joined
[2026-01-13 10:01:35] 2026-01-13 15:01:25,944 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 10:01:35] 2026-01-13 15:01:25,944 | INFO     | traces error code: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:25,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 10:01:35] 2026-01-13 15:01:34,959 | INFO     | PID=2461643 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | INFO     | .. there are 18 such processes running
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 10:01:35] 2026-01-13 15:01:34,960 | INFO     | [monitor] control thread has ended
[2026-01-13 10:01:35] 2026-01-13 15:01:35,449 [wrapper] ==== pilot stdout END ====
[2026-01-13 10:01:35] 2026-01-13 15:01:35,477 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 10:01:35] 2026-01-13 15:01:35,510 [wrapper] pilotpid: 2461643
[2026-01-13 10:01:35] 2026-01-13 15:01:35,540 [wrapper] Pilot exit status: 0
[2026-01-13 10:01:35] 2026-01-13 15:01:35,606 [wrapper] pandaids: 6968009847 6968009847
[2026-01-13 10:01:35] 2026-01-13 15:01:35,680 [wrapper] cleanup supervisor_pilot  419309 2461644
[2026-01-13 10:01:35] 2026-01-13 15:01:35,683 [wrapper] Test setup, not cleaning
[2026-01-13 10:01:35] 2026-01-13 15:01:35,686 [wrapper] apfmon messages muted
[2026-01-13 10:01:35] 2026-01-13 15:01:35,689 [wrapper] ==== wrapper stdout END ====
[2026-01-13 10:01:35] 2026-01-13 15:01:35,691 [wrapper] ==== wrapper stderr END ====
[2026-01-13 10:01:35]  *** Error codes and diagnostics ***
[2026-01-13 10:01:35]     "exeErrorCode": 0,
[2026-01-13 10:01:35]     "exeErrorDiag": "",
[2026-01-13 10:01:35]     "pilotErrorCode": 0,
[2026-01-13 10:01:35]     "pilotErrorDiag": "",
[2026-01-13 10:01:35]  *** Listing of results directory ***
[2026-01-13 10:01:35] total 994348
[2026-01-13 10:01:35] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 19:14 pilot3.tar.gz
[2026-01-13 10:01:35] -rwx------. 1 boincer umatlas     36322 Jan 12 19:26 runpilot2-wrapper.sh
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 19:26 queuedata.json
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas       100 Jan 12 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 10:01:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 19:31 run_atlas
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas       105 Jan 12 19:31 job.xml
[2026-01-13 10:01:35] -rw-r--r--. 3 boincer umatlas 353951738 Jan 12 19:32 EVNT.48188671._000009.pool.root.1
[2026-01-13 10:01:35] -rw-r--r--. 3 boincer umatlas 353951738 Jan 12 19:32 ATLAS.root_0
[2026-01-13 10:01:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 19:32 start_atlas.sh
[2026-01-13 10:01:35] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 19:32 shared
[2026-01-13 10:01:35] -rw-r--r--. 2 boincer umatlas    592405 Jan 12 19:32 input.tar.gz
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas         0 Jan 12 19:32 boinc_lockfile
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas      2632 Jan 12 21:13 pandaJob.out
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas        57 Jan 12 21:13 setup.sh.local
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas    987763 Jan 12 21:13 agis_schedconf.cvmfs.json
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas 293302003 Jan 13 09:59 HITS.48188673._000213.pool.root.1
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas       532 Jan 13 09:59 boinc_task_state.xml
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas      6842 Jan 13 10:00 init_data.xml
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas      1050 Jan 13 10:00 memory_monitor_summary.json
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas   1516246 Jan 13 10:00 agis_ddmendpoints.agis.ALL.json
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas    953890 Jan 13 10:00 log.48188673._000213.job.log.tgz.1
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas        96 Jan 13 10:00 pilot_heartbeat.json
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas      7833 Jan 13 10:01 heartbeat.json
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 10:01 boinc_mmap_file
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas        28 Jan 13 10:01 wrapper_checkpoint.txt
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas       823 Jan 13 10:01 pilotlog.txt
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas   5591877 Jan 13 10:01 log.48188673._000213.job.log.1
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas       357 Jan 13 10:01 output.list
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas       620 Jan 13 10:01 runtime_log
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas   6563840 Jan 13 10:01 result.tar.gz
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas      9433 Jan 13 10:01 runtime_log.err
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas       789 Jan 13 10:01 IDSNDmePhz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtunKDmHdEDOn.diag
[2026-01-13 10:01:35] -rw-r--r--. 1 boincer umatlas     23499 Jan 13 10:01 stderr.txt
[2026-01-13 10:01:35] HITS file was successfully produced:
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas 293302003 Jan 13 09:59 shared/HITS.pool.root.1
[2026-01-13 10:01:35]  *** Contents of shared directory: ***
[2026-01-13 10:01:35] total 639100
[2026-01-13 10:01:35] -rw-r--r--. 3 boincer umatlas 353951738 Jan 12 19:32 ATLAS.root_0
[2026-01-13 10:01:35] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 19:32 start_atlas.sh
[2026-01-13 10:01:35] -rw-r--r--. 2 boincer umatlas    592405 Jan 12 19:32 input.tar.gz
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas 293302003 Jan 13 09:59 HITS.pool.root.1
[2026-01-13 10:01:35] -rw-------. 1 boincer umatlas   6563840 Jan 13 10:01 result.tar.gz
10:01:37 (2450658): run_atlas exited; CPU time 60195.194858
10:01:37 (2450658): called boinc_finish(0)

</stderr_txt>
]]>

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