Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:22:13 (1533471): wrapper (7.7.26015): starting
22:22:13 (1533471): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 22:22:13] Arguments: --nthreads 8
[2026-01-12 22:22:13] Threads: 8
[2026-01-12 22:22:13] Checking for CVMFS
[2026-01-12 22:22:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 22:22:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 22:22:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 22:22:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 22:22:15] 2.13.3.0 589311 22114 165044 155075 2 86 27645570 39288833 10657 16776704 0 9076818 99.587 11536601 47324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 22:22:15] CVMFS is ok
[2026-01-12 22:22:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 22:22:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 22:22:15] Further information can be found at the LHC@home message board.
[2026-01-12 22:22:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 22:22:15] Checking for apptainer binary...
[2026-01-12 22:22:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 22:22:15] Running /usr/bin/apptainer --version
[2026-01-12 22:22:16] apptainer version 1.4.5-2.el9
[2026-01-12 22:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 22:22:16] c-210-23.aglt2.org
[2026-01-12 22:22:16] apptainer works
[2026-01-12 22:22:16] Set ATHENA_PROC_NUMBER=8
[2026-01-12 22:22:16] Set ATHENA_CORE_NUMBER=8
[2026-01-12 22:22:16] Starting ATLAS job with PandaID=6968009701
[2026-01-12 22:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 09:34:44]  *** The last 200 lines of the pilot log: ***
[2026-01-13 09:34:44] 2026-01-13 14:34:04,133 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 09:34:44] 2026-01-13 14:34:05,585 | INFO     | time since job start (40248s) is within the limit (349056.0s)
[2026-01-13 09:34:44] 2026-01-13 14:34:06,637 | INFO     | monitor loop #2606: job 0:6968009701 is in state 'finished'
[2026-01-13 09:34:44] 2026-01-13 14:34:06,638 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 09:34:44] 2026-01-13 14:34:07,592 | INFO     | time since job start (40250s) is within the limit (349056.0s)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,142 | INFO     | monitor loop #2607: job 0:6968009701 is in state 'finished'
[2026-01-13 09:34:44] 2026-01-13 14:34:09,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,598 | INFO     | time since job start (40252s) is within the limit (349056.0s)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,771 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 09:34:44] 2026-01-13 14:34:09,779 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1036250000006
[2026-01-13 09:34:44] 2026-01-13 14:34:09,785 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6968009701/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,786 | INFO     | extracted standard info from prmon json
[2026-01-13 09:34:44] 2026-01-13 14:34:09,786 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 09:34:44] 2026-01-13 14:34:09,786 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 09:34:44] 2026-01-13 14:34:09,787 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 09:34:44] 2026-01-13 14:34:09,787 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 09:34:44] 2026-01-13 14:34:09,799 | INFO     | fitting pss+swap vs Time
[2026-01-13 09:34:44] 2026-01-13 14:34:09,801 | INFO     | sum of square deviations: 88333995042.87679
[2026-01-13 09:34:44] 2026-01-13 14:34:09,812 | INFO     | sum of deviations: 1660526625.1777573
[2026-01-13 09:34:44] 2026-01-13 14:34:09,812 | INFO     | mean x: 1768294773.156535
[2026-01-13 09:34:44] 2026-01-13 14:34:09,812 | INFO     | mean y: 2620903.5516717327
[2026-01-13 09:34:44] 2026-01-13 14:34:09,812 | INFO     | intersect: -30619985.763521433
[2026-01-13 09:34:44] 2026-01-13 14:34:09,813 | INFO     | chi2: 3.326587018796817
[2026-01-13 09:34:44] 2026-01-13 14:34:09,814 | INFO     | sum of square deviations: 86335568398.20605
[2026-01-13 09:34:44] 2026-01-13 14:34:09,825 | INFO     | sum of deviations: 42980665799.549736
[2026-01-13 09:34:44] 2026-01-13 14:34:09,825 | INFO     | mean x: 1768294620.661562
[2026-01-13 09:34:44] 2026-01-13 14:34:09,825 | INFO     | mean y: 2624036.2649310874
[2026-01-13 09:34:44] 2026-01-13 14:34:09,825 | INFO     | intersect: -877690781.0911032
[2026-01-13 09:34:44] 2026-01-13 14:34:09,826 | INFO     | chi2: 2.655036074011433
[2026-01-13 09:34:44] 2026-01-13 14:34:09,827 | INFO     | current chi2=2.655036074011433 (change=20.18738547919529 %)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,827 | INFO     | right removable region: 652
[2026-01-13 09:34:44] 2026-01-13 14:34:09,828 | INFO     | sum of square deviations: 86335345138.52684
[2026-01-13 09:34:44] 2026-01-13 14:34:09,838 | INFO     | sum of deviations: -146337895068.5698
[2026-01-13 09:34:44] 2026-01-13 14:34:09,839 | INFO     | mean x: 1768294925.6600306
[2026-01-13 09:34:44] 2026-01-13 14:34:09,839 | INFO     | mean y: 2632171.4839203674
[2026-01-13 09:34:44] 2026-01-13 14:34:09,839 | INFO     | intersect: 2999881523.6041036
[2026-01-13 09:34:44] 2026-01-13 14:34:09,840 | INFO     | chi2: 1.2664263808023195
[2026-01-13 09:34:44] 2026-01-13 14:34:09,840 | INFO     | current chi2=1.2664263808023195 (change=61.93015923989358 %)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,841 | INFO     | sum of square deviations: 84367027941.33192
[2026-01-13 09:34:44] 2026-01-13 14:34:09,852 | INFO     | sum of deviations: -168635258337.75003
[2026-01-13 09:34:44] 2026-01-13 14:34:09,852 | INFO     | mean x: 1768295078.1651235
[2026-01-13 09:34:44] 2026-01-13 14:34:09,852 | INFO     | mean y: 2633895.25
[2026-01-13 09:34:44] 2026-01-13 14:34:09,852 | INFO     | intersect: 3537153299.336522
[2026-01-13 09:34:44] 2026-01-13 14:34:09,853 | INFO     | chi2: 1.208614405239219
[2026-01-13 09:34:44] 2026-01-13 14:34:09,853 | INFO     | current chi2=1.208614405239219 (change=4.56496930571479 %)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,853 | INFO     | left removable region: 20
[2026-01-13 09:34:44] 2026-01-13 14:34:09,854 | INFO     | sum of square deviations: 78270162541.43669
[2026-01-13 09:34:44] 2026-01-13 14:34:09,864 | INFO     | sum of deviations: -88633247452.90193
[2026-01-13 09:34:44] 2026-01-13 14:34:09,865 | INFO     | mean x: 1768295200.1803796
[2026-01-13 09:34:44] 2026-01-13 14:34:09,865 | INFO     | mean y: 2634051.5079113925
[2026-01-13 09:34:44] 2026-01-13 14:34:09,865 | INFO     | intersect: 2005054143.1282997
[2026-01-13 09:34:44] 2026-01-13 14:34:09,866 | INFO     | chi2: 0.46585169528719056
[2026-01-13 09:34:44] 2026-01-13 14:34:09,866 | INFO     | current memory leak: -1.13 B/s (using 632 data points, chi2=0.47)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,867 | INFO     | could have reported an average CPU frequency of 2600 MHz (25 samples)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,867 | INFO     | ..............................
[2026-01-13 09:34:44] 2026-01-13 14:34:09,867 | INFO     | . Timing measurements:
[2026-01-13 09:34:44] 2026-01-13 14:34:09,867 | INFO     | . get job = 0 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . initial setup = 6 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . payload setup = 42 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . stage-in = 0 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . payload execution = 40128 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . stage-out = 2 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | . log creation = 0 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,868 | INFO     | ..............................
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | 
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | job summary report
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | --------------------------------------------------
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | PanDA job id: 6968009701
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | task id: 48188673
[2026-01-13 09:34:44] 2026-01-13 14:34:09,983 | INFO     | errors: (none)
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | pilot state: finished 
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | transexitcode: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | exeerrorcode: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | exeerrordiag: 
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | exitcode: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | exitmsg: OK
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | cpuconsumptiontime: 73065 s
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | nevents: 400
[2026-01-13 09:34:44] 2026-01-13 14:34:09,984 | INFO     | neventsw: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | pid: 1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | pgrp: 1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | corecount: 8
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | event service: False
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | sizes: {0: 2284124, 1: 2284124, 12: 2284152, 22: 2284180, 29: 2284470, 33: 2284498, 40174: 2327262, 40177: 2336260, 40179: 2336316, 40189: 2336574}
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | --------------------------------------------------
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | 
[2026-01-13 09:34:44] 2026-01-13 14:34:09,985 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-13 09:34:44] 2026-01-13 14:34:10,022 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,023 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,024 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 09:34:44] 2026-01-13 14:34:10,025 | INFO     | job 6968009701 has completed (purged errors)
[2026-01-13 09:34:44] 2026-01-13 14:34:10,025 | INFO     | overall cleanup function is called
[2026-01-13 09:34:44] 2026-01-13 14:34:11,034 | INFO     | --- collectZombieJob: --- 10, [1544685]
[2026-01-13 09:34:44] 2026-01-13 14:34:11,034 | INFO     | zombie collector waiting for pid 1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:11,034 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 09:34:44] 2026-01-13 14:34:11,035 | INFO     | collected zombie processes
[2026-01-13 09:34:44] 2026-01-13 14:34:11,035 | INFO     | will attempt to kill all subprocesses of pid=1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:11,572 | INFO     | process IDs to be killed: [1544685] (in reverse order)
[2026-01-13 09:34:44] 2026-01-13 14:34:11,803 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 09:34:44] 2026-01-13 14:34:11,803 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 09:34:44] 2026-01-13 14:34:11,812 | INFO     | did not find any defunct processes belonging to 1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:11,821 | INFO     | did not find any defunct processes belonging to 1544685
[2026-01-13 09:34:44] 2026-01-13 14:34:11,821 | INFO     | ready for new job
[2026-01-13 09:34:44] 2026-01-13 14:34:11,821 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 09:34:44] 2026-01-13 14:34:11,834 | INFO     | ***************************************
[2026-01-13 09:34:44] 2026-01-13 14:34:11,834 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 09:34:44] 2026-01-13 14:34:11,834 | INFO     | ***************************************
[2026-01-13 09:34:44] 2026-01-13 14:34:11,835 | INFO     | 
[2026-01-13 09:34:44] 2026-01-13 14:34:11,839 | INFO     | architecture information:
[2026-01-13 09:34:44] 2026-01-13 14:34:11,840 | INFO     | executing command: cat /etc/os-release
[2026-01-13 09:34:44] 2026-01-13 14:34:11,855 | INFO     | cat /etc/os-release:
[2026-01-13 09:34:44] NAME="CentOS Linux"
[2026-01-13 09:34:44] VERSION="7 (Core)"
[2026-01-13 09:34:44] ID="centos"
[2026-01-13 09:34:44] ID_LIKE="rhel fedora"
[2026-01-13 09:34:44] VERSION_ID="7"
[2026-01-13 09:34:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 09:34:44] ANSI_COLOR="0;31"
[2026-01-13 09:34:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 09:34:44] HOME_URL="https://www.centos.org/"
[2026-01-13 09:34:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 09:34:44] 
[2026-01-13 09:34:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 09:34:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 09:34:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 09:34:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 09:34:44] 
[2026-01-13 09:34:44] 2026-01-13 14:34:11,856 | INFO     | ***************************************
[2026-01-13 09:34:44] 2026-01-13 14:34:12,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-13 09:34:44] 2026-01-13 14:34:12,400 | INFO     | sufficient remaining disk space (51650756608 B)
[2026-01-13 09:34:44] 2026-01-13 14:34:12,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 09:34:44] 2026-01-13 14:34:12,400 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 09:34:44] 2026-01-13 14:34:12,400 | INFO     | update_server=False
[2026-01-13 09:34:44] 2026-01-13 14:34:12,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 09:34:44] 2026-01-13 14:34:12,553 | INFO     | all job control threads have been joined
[2026-01-13 09:34:44] 2026-01-13 14:34:12,695 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:34:44] 2026-01-13 14:34:12,696 | INFO     | aborting loop
[2026-01-13 09:34:44] 2026-01-13 14:34:12,852 | INFO     | all payload control threads have been joined
[2026-01-13 09:34:44] 2026-01-13 14:34:13,374 | INFO     | all data control threads have been joined
[2026-01-13 09:34:44] 2026-01-13 14:34:13,406 | INFO     | [job] retrieve thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,558 | INFO     | [job] control thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,635 | INFO     | [data] copytool_in thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,699 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,702 | INFO     | [job] job monitor thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 09:34:44] 2026-01-13 14:34:13,858 | INFO     | [payload] control thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,910 | INFO     | [payload] validate_post thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:13,958 | INFO     | [payload] failed_post thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:14,094 | INFO     | [job] validate thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:14,096 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:14,272 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:14,380 | INFO     | [data] control thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:14,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 09:34:44] 2026-01-13 14:34:15,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 09:34:44] 2026-01-13 14:34:15,771 | INFO     | [data] copytool_out thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:16,008 | INFO     | [job] queue monitor thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:19,103 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:22,881 | INFO     | job.realtimelogging is not enabled
[2026-01-13 09:34:44] 2026-01-13 14:34:23,887 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 09:34:44] 2026-01-13 14:34:27,646 | INFO     | [monitor] cgroup control has ended
[2026-01-13 09:34:44] 2026-01-13 14:34:28,652 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400513312576)>', '<ExcThread(monitor, started 140400039806720)>']
[2026-01-13 09:34:44] 2026-01-13 14:34:33,678 | INFO     | all workflow threads have been joined
[2026-01-13 09:34:44] 2026-01-13 14:34:33,678 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 09:34:44] 2026-01-13 14:34:33,679 | INFO     | traces error code: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:33,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 09:34:44] 2026-01-13 14:34:43,497 | INFO     | PID=1537586 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | INFO     | .. there are 7 such processes running
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 09:34:44] 2026-01-13 14:34:43,498 | INFO     | [monitor] control thread has ended
[2026-01-13 09:34:44] 2026-01-13 14:34:43,725 [wrapper] ==== pilot stdout END ====
[2026-01-13 09:34:44] 2026-01-13 14:34:43,746 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 09:34:44] 2026-01-13 14:34:43,770 [wrapper] pilotpid: 1537586
[2026-01-13 09:34:44] 2026-01-13 14:34:43,785 [wrapper] Pilot exit status: 0
[2026-01-13 09:34:44] 2026-01-13 14:34:43,876 [wrapper] pandaids: 6968009701
[2026-01-13 09:34:44] 2026-01-13 14:34:44,031 [wrapper] cleanup supervisor_pilot 2523019 1537587
[2026-01-13 09:34:44] 2026-01-13 14:34:44,034 [wrapper] Test setup, not cleaning
[2026-01-13 09:34:44] 2026-01-13 14:34:44,041 [wrapper] apfmon messages muted
[2026-01-13 09:34:44] 2026-01-13 14:34:44,044 [wrapper] ==== wrapper stdout END ====
[2026-01-13 09:34:44] 2026-01-13 14:34:44,046 [wrapper] ==== wrapper stderr END ====
[2026-01-13 09:34:44]  *** Error codes and diagnostics ***
[2026-01-13 09:34:44]     "exeErrorCode": 0,
[2026-01-13 09:34:44]     "exeErrorDiag": "",
[2026-01-13 09:34:44]     "pilotErrorCode": 0,
[2026-01-13 09:34:44]     "pilotErrorDiag": "",
[2026-01-13 09:34:44]  *** Listing of results directory ***
[2026-01-13 09:34:44] total 653132
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 19:14 pilot3.tar.gz
[2026-01-13 09:34:44] -rwx------. 1 boincer umatlas     36322 Jan 12 19:26 runpilot2-wrapper.sh
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 19:26 queuedata.json
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas       100 Jan 12 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 09:34:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 22:22 run_atlas
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas       105 Jan 12 22:22 job.xml
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas 352219571 Jan 12 22:22 EVNT.48188671._000003.pool.root.1
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 22:22 start_atlas.sh
[2026-01-13 09:34:44] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 22:22 shared
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas    592409 Jan 12 22:22 input.tar.gz
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas         0 Jan 12 22:22 boinc_lockfile
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas      2630 Jan 12 22:22 pandaJob.out
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas        57 Jan 12 22:22 setup.sh.local
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas    987763 Jan 12 22:23 agis_schedconf.cvmfs.json
[2026-01-13 09:34:44] drwx------. 5 boincer umatlas      4096 Jan 12 22:23 pilot3
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas      6658 Jan 13 09:29 init_data.xml
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas 300444300 Jan 13 09:32 HITS.48188673._000068.pool.root.1
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas       532 Jan 13 09:32 boinc_task_state.xml
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas        95 Jan 13 09:33 pilot_heartbeat.json
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas      1039 Jan 13 09:33 memory_monitor_summary.json
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas   1516246 Jan 13 09:33 agis_ddmendpoints.agis.ALL.json
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas    911761 Jan 13 09:33 log.48188673._000068.job.log.tgz.1
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas      7813 Jan 13 09:34 heartbeat.json
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 09:34 boinc_mmap_file
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas        28 Jan 13 09:34 wrapper_checkpoint.txt
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas       822 Jan 13 09:34 pilotlog.txt
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas   5205863 Jan 13 09:34 log.48188673._000068.job.log.1
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas       357 Jan 13 09:34 output.list
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas       620 Jan 13 09:34 runtime_log
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas   6133760 Jan 13 09:34 result.tar.gz
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas       659 Jan 13 09:34 swTKDmePhz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmctnKDmxHtYjm.diag
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas      9343 Jan 13 09:34 runtime_log.err
[2026-01-13 09:34:44] -rw-r--r--. 1 boincer umatlas     21405 Jan 13 09:34 stderr.txt
[2026-01-13 09:34:44] HITS file was successfully produced:
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas 300444300 Jan 13 09:32 shared/HITS.pool.root.1
[2026-01-13 09:34:44]  *** Contents of shared directory: ***
[2026-01-13 09:34:44] total 643964
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas 352219571 Jan 12 22:22 ATLAS.root_0
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 22:22 start_atlas.sh
[2026-01-13 09:34:44] -rw-r--r--. 2 boincer umatlas    592409 Jan 12 22:22 input.tar.gz
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas 300444300 Jan 13 09:32 HITS.pool.root.1
[2026-01-13 09:34:44] -rw-------. 1 boincer umatlas   6133760 Jan 13 09:34 result.tar.gz
09:34:46 (1533471): run_atlas exited; CPU time 73929.114447
09:34:46 (1533471): called boinc_finish(0)

</stderr_txt>
]]>

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