Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:44:17 (10354): wrapper (7.7.26015): starting
00:44:17 (10354): wrapper: running run_atlas (--nthreads 8)
[2026-01-13 00:44:17] Arguments: --nthreads 8
[2026-01-13 00:44:17] Threads: 8
[2026-01-13 00:44:17] Checking for CVMFS
[2026-01-13 00:44:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 00:44:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 00:44:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 00:44:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 00:44:23] 2.11.2.0 27636 40394 128812 155070 1 11 25117328 25165824 96 130560 0 16240640 99.803 10451731 3247 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-13 00:44:23] CVMFS is ok
[2026-01-13 00:44:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 00:44:23] Checking for apptainer binary...
[2026-01-13 00:44:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 00:44:23] Running /usr/bin/apptainer --version
[2026-01-13 00:44:23] apptainer version 1.3.2-1.el7
[2026-01-13 00:44:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 00:44:33] cg-vwn429.simple-grid.lan
[2026-01-13 00:44:33] apptainer works
[2026-01-13 00:44:33] Set ATHENA_PROC_NUMBER=8
[2026-01-13 00:44:33] Set ATHENA_CORE_NUMBER=8
[2026-01-13 00:44:33] Starting ATLAS job with PandaID=6967961007
[2026-01-13 00:44:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 06:40:44]  *** The last 200 lines of the pilot log: ***
[2026-01-13 06:40:44] 2026-01-13 05:39:41,944 | INFO     | time since job start (21045s) is within the limit (349056.0s)
[2026-01-13 06:40:44] 2026-01-13 05:39:41,991 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 06:40:44] 2026-01-13 05:39:41,992 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-13 06:40:44] 2026-01-13 05:39:41,994 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6967961007/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 06:40:44] 2026-01-13 05:39:41,995 | INFO     | extracted standard info from prmon json
[2026-01-13 06:40:44] 2026-01-13 05:39:41,995 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 06:40:44] 2026-01-13 05:39:41,995 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 06:40:44] 2026-01-13 05:39:41,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 06:40:44] 2026-01-13 05:39:41,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 06:40:44] 2026-01-13 05:39:42,003 | INFO     | fitting pss+swap vs Time
[2026-01-13 06:40:44] 2026-01-13 05:39:42,009 | INFO     | sum of square deviations: 11553509647.5
[2026-01-13 06:40:44] 2026-01-13 05:39:42,012 | INFO     | sum of deviations: 207609612073.49997
[2026-01-13 06:40:44] 2026-01-13 05:39:42,013 | INFO     | mean x: 1768272449.5
[2026-01-13 06:40:44] 2026-01-13 05:39:42,013 | INFO     | mean y: 2498496.52994012
[2026-01-13 06:40:44] 2026-01-13 05:39:42,013 | INFO     | intersect: -31772292755.787884
[2026-01-13 06:40:44] 2026-01-13 05:39:42,013 | INFO     | chi2: 8.249075370237364
[2026-01-13 06:40:44] 2026-01-13 05:39:42,014 | INFO     | sum of square deviations: 11042365180.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,032 | INFO     | sum of deviations: 226890788503.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,032 | INFO     | mean x: 1768272297.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,032 | INFO     | mean y: 2504167.0455927053
[2026-01-13 06:40:44] 2026-01-13 05:39:42,032 | INFO     | intersect: -36330716951.289215
[2026-01-13 06:40:44] 2026-01-13 05:39:42,033 | INFO     | chi2: 7.530299359138274
[2026-01-13 06:40:44] 2026-01-13 05:39:42,033 | INFO     | current chi2=7.530299359138274 (change=8.71341306557134 %)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,033 | INFO     | right removable region: 328
[2026-01-13 06:40:44] 2026-01-13 05:39:42,034 | INFO     | sum of square deviations: 11042365180.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,037 | INFO     | sum of deviations: 90387718436.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,038 | INFO     | mean x: 1768272602.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,038 | INFO     | mean y: 2533452.723404255
[2026-01-13 06:40:44] 2026-01-13 05:39:42,038 | INFO     | intersect: -14471732111.066715
[2026-01-13 06:40:44] 2026-01-13 05:39:42,038 | INFO     | chi2: 3.5717730184154117
[2026-01-13 06:40:44] 2026-01-13 05:39:42,039 | INFO     | current chi2=3.5717730184154117 (change=56.70092879376085 %)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,039 | INFO     | sum of square deviations: 10546523325.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,050 | INFO     | sum of deviations: -859477861.0000038
[2026-01-13 06:40:44] 2026-01-13 05:39:42,050 | INFO     | mean x: 1768272754.5
[2026-01-13 06:40:44] 2026-01-13 05:39:42,050 | INFO     | mean y: 2561488.4814814813
[2026-01-13 06:40:44] 2026-01-13 05:39:42,050 | INFO     | intersect: 146665022.68593886
[2026-01-13 06:40:44] 2026-01-13 05:39:42,051 | INFO     | chi2: 0.8931651221547484
[2026-01-13 06:40:44] 2026-01-13 05:39:42,051 | INFO     | current chi2=0.8931651221547484 (change=74.99378830766257 %)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,052 | INFO     | sum of square deviations: 10065751520.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,055 | INFO     | sum of deviations: -16275477771.000002
[2026-01-13 06:40:44] 2026-01-13 05:39:42,055 | INFO     | mean x: 1768272907.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,055 | INFO     | mean y: 2566355.6112852665
[2026-01-13 06:40:44] 2026-01-13 05:39:42,056 | INFO     | intersect: 2861715653.4811034
[2026-01-13 06:40:44] 2026-01-13 05:39:42,056 | INFO     | chi2: 0.7965912979496785
[2026-01-13 06:40:44] 2026-01-13 05:39:42,056 | INFO     | current chi2=0.7965912979496785 (change=10.81253866833569 %)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,056 | INFO     | left removable region: 30
[2026-01-13 06:40:44] 2026-01-13 05:39:42,057 | INFO     | sum of square deviations: 8205826414.5
[2026-01-13 06:40:44] 2026-01-13 05:39:42,060 | INFO     | sum of deviations: -4522079511.0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,060 | INFO     | mean x: 1768273181.5
[2026-01-13 06:40:44] 2026-01-13 05:39:42,060 | INFO     | mean y: 2576803.9060402685
[2026-01-13 06:40:44] 2026-01-13 05:39:42,060 | INFO     | intersect: 977039523.4417869
[2026-01-13 06:40:44] 2026-01-13 05:39:42,061 | INFO     | chi2: 0.004145225337879829
[2026-01-13 06:40:44] 2026-01-13 05:39:42,061 | INFO     | current memory leak: -0.55 B/s (using 298 data points, chi2=0.00)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,062 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,062 | INFO     | ..............................
[2026-01-13 06:40:44] 2026-01-13 05:39:42,062 | INFO     | . Timing measurements:
[2026-01-13 06:40:44] 2026-01-13 05:39:42,062 | INFO     | . get job = 0 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,062 | INFO     | . initial setup = 11 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,063 | INFO     | . payload setup = 162 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,063 | INFO     | . stage-in = 0 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,063 | INFO     | . payload execution = 20525 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,076 | INFO     | . stage-out = 6 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,076 | INFO     | . log creation = 1 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,076 | INFO     | ..............................
[2026-01-13 06:40:44] 2026-01-13 05:39:42,203 | INFO     | 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | job summary report
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | --------------------------------------------------
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | PanDA job id: 6967961007
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | task id: 48188665
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | errors: (none)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | pilot state: finished 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | transexitcode: 0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,204 | INFO     | exeerrorcode: 0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | exeerrordiag: 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | exitcode: 0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | exitmsg: OK
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | cpuconsumptiontime: 76896 s
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | nevents: 400
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | neventsw: 0
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | pid: 21139
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | pgrp: 21139
[2026-01-13 06:40:44] 2026-01-13 05:39:42,205 | INFO     | corecount: 8
[2026-01-13 06:40:44] 2026-01-13 05:39:42,206 | INFO     | event service: False
[2026-01-13 06:40:44] 2026-01-13 05:39:42,206 | INFO     | sizes: {0: 2283899, 1: 2284154, 12: 2284154, 23: 2284182, 33: 2284210, 44: 2284266, 55: 2284422, 66: 2284450, 76: 2284478, 87: 2284534, 98: 2284562, 109: 2284870, 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,206 | INFO     | --------------------------------------------------
[2026-01-13 06:40:44] 2026-01-13 05:39:42,206 | INFO     | 
[2026-01-13 06:40:44] 2026-01-13 05:39:42,206 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-13 06:40:44] 2026-01-13 05:39:42,753 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,755 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | job 6967961007 has completed (purged errors)
[2026-01-13 06:40:44] 2026-01-13 05:39:42,756 | INFO     | overall cleanup function is called
[2026-01-13 06:40:44] 2026-01-13 05:39:43,766 | INFO     | --- collectZombieJob: --- 10, [21139]
[2026-01-13 06:40:44] 2026-01-13 05:39:43,766 | INFO     | zombie collector waiting for pid 21139
[2026-01-13 06:40:44] 2026-01-13 05:39:43,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 06:40:44] 2026-01-13 05:39:43,766 | INFO     | collected zombie processes
[2026-01-13 06:40:44] 2026-01-13 05:39:43,767 | INFO     | will attempt to kill all subprocesses of pid=21139
[2026-01-13 06:40:44] 2026-01-13 05:39:43,850 | INFO     | process IDs to be killed: [21139] (in reverse order)
[2026-01-13 06:40:44] 2026-01-13 05:39:44,750 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 06:40:44] 2026-01-13 05:39:44,750 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 06:40:44] 2026-01-13 05:39:44,752 | INFO     | did not find any defunct processes belonging to 21139
[2026-01-13 06:40:44] 2026-01-13 05:39:44,754 | INFO     | did not find any defunct processes belonging to 21139
[2026-01-13 06:40:44] 2026-01-13 05:39:44,754 | INFO     | ready for new job
[2026-01-13 06:40:44] 2026-01-13 05:39:44,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 06:40:44] 2026-01-13 05:39:44,757 | INFO     | ***************************************
[2026-01-13 06:40:44] 2026-01-13 05:39:44,757 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 06:40:44] 2026-01-13 05:39:44,757 | INFO     | ***************************************
[2026-01-13 06:40:44] 2026-01-13 05:39:44,757 | INFO     | 
[2026-01-13 06:40:44] 2026-01-13 05:39:44,758 | INFO     | pilot is running in a VM
[2026-01-13 06:40:44] 2026-01-13 05:39:44,758 | INFO     | architecture information:
[2026-01-13 06:40:44] 2026-01-13 05:39:44,771 | INFO     | executing command: cat /etc/os-release
[2026-01-13 06:40:44] 2026-01-13 05:39:45,017 | INFO     | cat /etc/os-release:
[2026-01-13 06:40:44] NAME="CentOS Linux"
[2026-01-13 06:40:44] VERSION="7 (Core)"
[2026-01-13 06:40:44] ID="centos"
[2026-01-13 06:40:44] ID_LIKE="rhel fedora"
[2026-01-13 06:40:44] VERSION_ID="7"
[2026-01-13 06:40:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 06:40:44] ANSI_COLOR="0;31"
[2026-01-13 06:40:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 06:40:44] HOME_URL="https://www.centos.org/"
[2026-01-13 06:40:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 06:40:44] 
[2026-01-13 06:40:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 06:40:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 06:40:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 06:40:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 06:40:44] 
[2026-01-13 06:40:44] 2026-01-13 05:39:45,018 | INFO     | ***************************************
[2026-01-13 06:40:44] 2026-01-13 05:39:45,521 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-13 06:40:44] 2026-01-13 05:39:45,758 | INFO     | sufficient remaining disk space (495622029312 B)
[2026-01-13 06:40:44] 2026-01-13 05:39:45,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 06:40:44] 2026-01-13 05:39:45,758 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 06:40:44] 2026-01-13 05:39:45,758 | INFO     | update_server=False
[2026-01-13 06:40:44] 2026-01-13 05:39:45,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 06:40:44] 2026-01-13 05:39:45,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 06:40:44] 2026-01-13 05:39:45,759 | INFO     | aborting loop
[2026-01-13 06:40:44] 2026-01-13 05:39:45,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 06:40:44] 2026-01-13 05:39:45,808 | INFO     | all data control threads have been joined
[2026-01-13 06:40:44] 2026-01-13 05:39:46,044 | INFO     | all payload control threads have been joined
[2026-01-13 06:40:44] 2026-01-13 05:39:46,764 | INFO     | [job] retrieve thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:46,768 | INFO     | [job] job monitor thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:46,814 | INFO     | [data] control thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:46,823 | INFO     | [payload] failed_post thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:46,861 | INFO     | all job control threads have been joined
[2026-01-13 06:40:44] 2026-01-13 05:39:46,871 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,050 | INFO     | [payload] control thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,090 | INFO     | [job] validate thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,099 | INFO     | [data] copytool_in thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 06:40:44] 2026-01-13 05:39:47,594 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,771 | INFO     | [data] copytool_out thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:47,867 | INFO     | [job] control thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:48,021 | INFO     | [payload] validate_post thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:48,135 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:48,140 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:48,230 | INFO     | [job] queue monitor thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:39:48,599 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 06:40:44] 2026-01-13 05:39:52,608 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 06:40:44] 2026-01-13 05:40:15,162 | INFO     | PID=14585 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-13 06:40:44] 2026-01-13 05:40:15,162 | INFO     | .. there are 2 such processes running
[2026-01-13 06:40:44] 2026-01-13 05:40:15,164 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 06:40:44] 2026-01-13 05:40:15,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 06:40:44] 2026-01-13 05:40:15,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 06:40:44] 2026-01-13 05:40:32,629 | INFO     | [monitor] cgroup control has ended
[2026-01-13 06:40:44] 2026-01-13 05:40:34,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473496180544)>', '<ExcThread(monitor, started 140473062643456)>']
[2026-01-13 06:40:44] 2026-01-13 05:40:35,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 06:40:44] 2026-01-13 05:40:35,282 | INFO     | [monitor] control thread has ended
[2026-01-13 06:40:44] 2026-01-13 05:40:39,497 | INFO     | all workflow threads have been joined
[2026-01-13 06:40:44] 2026-01-13 05:40:39,497 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 06:40:44] 2026-01-13 05:40:39,498 | INFO     | traces error code: 0
[2026-01-13 06:40:44] 2026-01-13 05:40:39,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 06:40:44] 2026-01-13 05:40:39,933 [wrapper] ==== pilot stdout END ====
[2026-01-13 06:40:44] 2026-01-13 05:40:40,035 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 06:40:44] 2026-01-13 05:40:40,152 [wrapper] pilotpid: 14585
[2026-01-13 06:40:44] 2026-01-13 05:40:40,262 [wrapper] Pilot exit status: 0
[2026-01-13 06:40:44] 2026-01-13 05:40:40,561 [wrapper] pandaids: 6967961007
[2026-01-13 06:40:44] 2026-01-13 05:40:41,674 [wrapper] cleanup supervisor_pilot 20085 14586
[2026-01-13 06:40:44] 2026-01-13 05:40:41,796 [wrapper] Test setup, not cleaning
[2026-01-13 06:40:44] 2026-01-13 05:40:41,912 [wrapper] apfmon messages muted
[2026-01-13 06:40:44] 2026-01-13 05:40:42,023 [wrapper] ==== wrapper stdout END ====
[2026-01-13 06:40:44] 2026-01-13 05:40:42,091 [wrapper] ==== wrapper stderr END ====
[2026-01-13 06:40:44]  *** Error codes and diagnostics ***
[2026-01-13 06:40:44]     "exeErrorCode": 0,
[2026-01-13 06:40:44]     "exeErrorDiag": "",
[2026-01-13 06:40:44]     "pilotErrorCode": 0,
[2026-01-13 06:40:44]     "pilotErrorDiag": "",
[2026-01-13 06:40:44]  *** Listing of results directory ***
[2026-01-13 06:40:44] total 596812
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc    579449 Jan 13 00:27 pilot3.tar.gz
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc      5112 Jan 13 00:40 queuedata.json
[2026-01-13 06:40:44] -rwx------. 1 boinc boinc     36322 Jan 13 00:41 runpilot2-wrapper.sh
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc       100 Jan 13 00:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 06:40:44] -rwxr-xr-x. 1 boinc boinc      7986 Jan 13 00:44 run_atlas
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc       105 Jan 13 00:44 job.xml
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc 319884466 Jan 13 00:44 EVNT.48188663._000010.pool.root.1
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc      6393 Jan 13 00:44 init_data.xml
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc     15847 Jan 13 00:44 start_atlas.sh
[2026-01-13 06:40:44] drwxrwx--x. 2 boinc boinc        68 Jan 13 00:44 shared
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc    592414 Jan 13 00:44 input.tar.gz
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc         0 Jan 13 00:44 boinc_lockfile
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc      2629 Jan 13 00:44 pandaJob.out
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc    988531 Jan 13 00:48 agis_schedconf.cvmfs.json
[2026-01-13 06:40:44] drwx------. 5 boinc boinc      4096 Jan 13 00:48 pilot3
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc 280529246 Jan 13 06:35 HITS.48188665._000248.pool.root.1
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc       531 Jan 13 06:36 boinc_task_state.xml
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc      1015 Jan 13 06:37 memory_monitor_summary.json
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc   1516240 Jan 13 06:37 agis_ddmendpoints.agis.ALL.json
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc    606083 Jan 13 06:37 log.48188665._000248.job.log.tgz.1
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc      7774 Jan 13 06:39 heartbeat.json
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc      8192 Jan 13 06:40 boinc_mmap_file
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc        28 Jan 13 06:40 wrapper_checkpoint.txt
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc        95 Jan 13 06:40 pilot_heartbeat.json
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc      4885 Jan 13 06:40 pilotlog.txt
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc   2806514 Jan 13 06:40 log.48188665._000248.job.log.1
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc       357 Jan 13 06:40 output.list
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc       620 Jan 13 06:40 runtime_log
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc   3430400 Jan 13 06:40 result.tar.gz
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc      8833 Jan 13 06:40 runtime_log.err
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc       657 Jan 13 06:40 Cp0NDm3hgz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK3hKDmZBqAxm.diag
[2026-01-13 06:40:44] -rw-r--r--. 1 boinc boinc     20535 Jan 13 06:40 stderr.txt
[2026-01-13 06:40:44] HITS file was successfully produced:
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc 280529246 Jan 13 06:35 shared/HITS.pool.root.1
[2026-01-13 06:40:44]  *** Contents of shared directory: ***
[2026-01-13 06:40:44] total 590292
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc 319884466 Jan 13 00:44 ATLAS.root_0
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc     15847 Jan 13 00:44 start_atlas.sh
[2026-01-13 06:40:44] -rw-r--r--. 2 boinc boinc    592414 Jan 13 00:44 input.tar.gz
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc 280529246 Jan 13 06:35 HITS.pool.root.1
[2026-01-13 06:40:44] -rw-------. 1 boinc boinc   3430400 Jan 13 06:40 result.tar.gz
06:40:45 (10354): run_atlas exited; CPU time 77107.743528
06:40:45 (10354): called boinc_finish(0)

</stderr_txt>
]]>

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