Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:43:38 (2790): wrapper (7.7.26015): starting
18:43:38 (2790): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 18:43:38] Arguments: --nthreads 12
[2026-01-12 18:43:38] Threads: 12
[2026-01-12 18:43:38] Checking for CVMFS
[2026-01-12 18:43:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 18:43:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 18:43:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 18:43:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 18:43:39] 2.11.2.0 2987 355991 94952 155070 3 1 13651640 20275200 1 130560 1 149301682 99.948 21930884 15981 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 18:43:39] CVMFS is ok
[2026-01-12 18:43:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 18:43:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 18:43:39] Further information can be found at the LHC@home message board.
[2026-01-12 18:43:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 18:43:39] Checking for apptainer binary...
[2026-01-12 18:43:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 18:43:39] Running /usr/bin/apptainer --version
[2026-01-12 18:43:39] apptainer version 1.3.2-1.el7
[2026-01-12 18:43:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 18:43:40] c-205-19.aglt2.org
[2026-01-12 18:43:40] apptainer works
[2026-01-12 18:43:40] Set ATHENA_PROC_NUMBER=12
[2026-01-12 18:43:40] Set ATHENA_CORE_NUMBER=12
[2026-01-12 18:43:40] Starting ATLAS job with PandaID=6967960853
[2026-01-12 18:43:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 20:23:12]  *** The last 200 lines of the pilot log: ***
[2026-01-12 20:23:12]  status_code=0
[2026-01-12 20:23:12]  storage_token=
[2026-01-12 20:23:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6967960853/log.48188665._000094.job.log.tgz.1
[2026-01-12 20:23:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/97/log.48188665._000094.job.log.tgz.1
[2026-01-12 20:23:12]  workdir=None
[2026-01-12 20:23:12] ]
[2026-01-12 20:23:12] 2026-01-13 01:22:02,731 | INFO     | transferring file log.48188665._000094.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967960853/log.48188665._000094.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 20:23:12] 2026-01-13 01:22:02,732 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967960853/log.48188665._000094.job.log.tgz.1 /tmp/boinchome/slots/0/log.48188665._000094.job
[2026-01-12 20:23:12] 2026-01-13 01:22:02,754 | INFO     | adding to output.list: log.48188665._000094.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/97/log.48188665._000094.job.log.tg
[2026-01-12 20:23:12] 2026-01-13 01:22:02,755 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 20:23:12] 2026-01-13 01:22:02,755 | INFO     | summary of transferred files:
[2026-01-12 20:23:12] 2026-01-13 01:22:02,756 | INFO     |  -- lfn=log.48188665._000094.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 20:23:12] 2026-01-13 01:22:02,756 | INFO     | stage-out finished correctly
[2026-01-12 20:23:12] 2026-01-13 01:22:02,792 | INFO     | time since job start (5885s) is within the limit (349056.0s)
[2026-01-12 20:23:12] 2026-01-13 01:22:02,914 | WARNING  | process 13289 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 20:23:12] 2026-01-13 01:22:02,914 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967960853/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:23:12] 2026-01-13 01:22:03,002 | INFO     | number of running child processes to parent process 13289: 1
[2026-01-12 20:23:12] 2026-01-13 01:22:03,002 | INFO     | maximum number of monitored processes: 6
[2026-01-12 20:23:12] 2026-01-13 01:22:04,795 | INFO     | time since job start (5887s) is within the limit (349056.0s)
[2026-01-12 20:23:12] 2026-01-13 01:22:05,295 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 20:23:12] 2026-01-13 01:22:05,504 | INFO     | monitor loop #434: job 0:6967960853 is in state 'finished'
[2026-01-12 20:23:12] 2026-01-13 01:22:05,504 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:23:12] 2026-01-13 01:22:05,912 | INFO     | PID=6865 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 20:23:12] 2026-01-13 01:22:06,913 | INFO     | time since job start (5889s) is within the limit (349056.0s)
[2026-01-12 20:23:12] 2026-01-13 01:22:07,535 | INFO     | job 6967960853 has state=finished
[2026-01-12 20:23:12] 2026-01-13 01:22:07,535 | INFO     | preparing for final server update for job 6967960853 in state='finished'
[2026-01-12 20:23:12] 2026-01-13 01:22:07,535 | INFO     | this job has now completed (state=finished)
[2026-01-12 20:23:12] 2026-01-13 01:22:07,536 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 20:23:12] 2026-01-13 01:22:07,536 | INFO     | log transfer has been attempted: DONE
[2026-01-12 20:23:12] 2026-01-13 01:22:07,536 | INFO     | job 6967960853 has finished - writing final server update
[2026-01-12 20:23:12] 2026-01-13 01:22:07,536 | INFO     | total number of processed events: 400 (read)
[2026-01-12 20:23:12] 2026-01-13 01:22:07,537 | INFO     | executing command: lscpu
[2026-01-12 20:23:12] 2026-01-13 01:22:07,563 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 20:23:12] 2026-01-13 01:22:08,007 | INFO     | monitor loop #435: job 0:6967960853 is in state 'finished'
[2026-01-12 20:23:12] 2026-01-13 01:22:08,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:23:12] 2026-01-13 01:22:08,918 | INFO     | time since job start (5891s) is within the limit (349056.0s)
[2026-01-12 20:23:12] 2026-01-13 01:22:10,510 | INFO     | monitor loop #436: job 0:6967960853 is in state 'finished'
[2026-01-12 20:23:12] 2026-01-13 01:22:10,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:23:12] 2026-01-13 01:22:10,924 | INFO     | time since job start (5893s) is within the limit (349056.0s)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,328 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 20:23:12] 2026-01-13 01:22:12,332 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-12 20:23:12] 2026-01-13 01:22:12,335 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967960853/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,336 | INFO     | extracted standard info from prmon json
[2026-01-12 20:23:12] 2026-01-13 01:22:12,336 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 20:23:12] 2026-01-13 01:22:12,336 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 20:23:12] 2026-01-13 01:22:12,336 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 20:23:12] 2026-01-13 01:22:12,337 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 20:23:12] 2026-01-13 01:22:12,339 | INFO     | fitting pss+swap vs Time
[2026-01-12 20:23:12] 2026-01-13 01:22:12,339 | INFO     | sum of square deviations: 218571540.0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,339 | INFO     | sum of deviations: -7911716531.0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,340 | INFO     | mean x: 1768264455.0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,340 | INFO     | mean y: 2818544.6741573033
[2026-01-12 20:23:12] 2026-01-13 01:22:12,340 | INFO     | intersect: 64009354435.86661
[2026-01-12 20:23:12] 2026-01-13 01:22:12,340 | INFO     | chi2: 0.14008657636943617
[2026-01-12 20:23:12] 2026-01-13 01:22:12,340 | INFO     | current memory leak: -36.20 B/s (using 89 data points, chi2=0.14)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | could have reported an average CPU frequency of 2118 MHz (7 samples)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | ..............................
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . Timing measurements:
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . get job = 0 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . initial setup = 2 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . payload setup = 7 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . stage-in = 0 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,341 | INFO     | . payload execution = 5856 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,342 | INFO     | . stage-out = 0 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,342 | INFO     | . log creation = 0 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,342 | INFO     | ..............................
[2026-01-12 20:23:12] 2026-01-13 01:22:12,422 | INFO     | 
[2026-01-12 20:23:12] 2026-01-13 01:22:12,422 | INFO     | job summary report
[2026-01-12 20:23:12] 2026-01-13 01:22:12,422 | INFO     | --------------------------------------------------
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | PanDA job id: 6967960853
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | task id: 48188665
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | errors: (none)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | pilot state: finished 
[2026-01-12 20:23:12] 2026-01-13 01:22:12,423 | INFO     | transexitcode: 0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | exeerrorcode: 0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | exeerrordiag: 
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | exitcode: 0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | exitmsg: OK
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | cpuconsumptiontime: 64060 s
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | nevents: 400
[2026-01-12 20:23:12] 2026-01-13 01:22:12,424 | INFO     | neventsw: 0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | pid: 13289
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | pgrp: 13289
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | corecount: 12
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | event service: False
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | sizes: {0: 2284121, 5: 2284383, 11: 2284439, 5867: 2311148, 5869: 2320146, 5871: 2320202, 5879: 2320524}
[2026-01-12 20:23:12] 2026-01-13 01:22:12,425 | INFO     | --------------------------------------------------
[2026-01-12 20:23:12] 2026-01-13 01:22:12,426 | INFO     | 
[2026-01-12 20:23:12] 2026-01-13 01:22:12,426 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 20:23:12] 2026-01-13 01:22:12,449 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,449 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,449 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,452 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,452 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 20:23:12] 2026-01-13 01:22:12,453 | INFO     | job 6967960853 has completed (purged errors)
[2026-01-12 20:23:12] 2026-01-13 01:22:12,453 | INFO     | overall cleanup function is called
[2026-01-12 20:23:12] 2026-01-13 01:22:13,461 | INFO     | --- collectZombieJob: --- 10, [13289]
[2026-01-12 20:23:12] 2026-01-13 01:22:13,500 | INFO     | zombie collector waiting for pid 13289
[2026-01-12 20:23:12] 2026-01-13 01:22:13,500 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 20:23:12] 2026-01-13 01:22:13,500 | INFO     | collected zombie processes
[2026-01-12 20:23:12] 2026-01-13 01:22:13,500 | INFO     | will attempt to kill all subprocesses of pid=13289
[2026-01-12 20:23:12] 2026-01-13 01:22:13,592 | INFO     | process IDs to be killed: [13289] (in reverse order)
[2026-01-12 20:23:12] 2026-01-13 01:22:13,643 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 20:23:12] 2026-01-13 01:22:13,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 20:23:12] 2026-01-13 01:22:13,647 | INFO     | did not find any defunct processes belonging to 13289
[2026-01-12 20:23:12] 2026-01-13 01:22:13,649 | INFO     | did not find any defunct processes belonging to 13289
[2026-01-12 20:23:12] 2026-01-13 01:22:13,649 | INFO     | ready for new job
[2026-01-12 20:23:12] 2026-01-13 01:22:13,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 20:23:12] 2026-01-13 01:22:13,651 | INFO     | ***************************************
[2026-01-12 20:23:12] 2026-01-13 01:22:13,651 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 20:23:12] 2026-01-13 01:22:13,651 | INFO     | ***************************************
[2026-01-12 20:23:12] 2026-01-13 01:22:13,651 | INFO     | 
[2026-01-12 20:23:12] 2026-01-13 01:22:13,651 | INFO     | architecture information:
[2026-01-12 20:23:12] 2026-01-13 01:22:13,652 | INFO     | executing command: cat /etc/os-release
[2026-01-12 20:23:12] 2026-01-13 01:22:13,667 | INFO     | cat /etc/os-release:
[2026-01-12 20:23:12] NAME="CentOS Linux"
[2026-01-12 20:23:12] VERSION="7 (Core)"
[2026-01-12 20:23:12] ID="centos"
[2026-01-12 20:23:12] ID_LIKE="rhel fedora"
[2026-01-12 20:23:12] VERSION_ID="7"
[2026-01-12 20:23:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 20:23:12] ANSI_COLOR="0;31"
[2026-01-12 20:23:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 20:23:12] HOME_URL="https://www.centos.org/"
[2026-01-12 20:23:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 20:23:12] 
[2026-01-12 20:23:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 20:23:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 20:23:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 20:23:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 20:23:12] 
[2026-01-12 20:23:12] 2026-01-13 01:22:13,667 | INFO     | ***************************************
[2026-01-12 20:23:12] 2026-01-13 01:22:14,170 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 20:23:12] 2026-01-13 01:22:14,186 | INFO     | sufficient remaining disk space (29045555200 B)
[2026-01-12 20:23:12] 2026-01-13 01:22:14,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 20:23:12] 2026-01-13 01:22:14,186 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 20:23:12] 2026-01-13 01:22:14,186 | INFO     | update_server=False
[2026-01-12 20:23:12] 2026-01-13 01:22:14,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 20:23:12] 2026-01-13 01:22:14,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:23:12] 2026-01-13 01:22:14,187 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:23:12] 2026-01-13 01:22:14,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 20:23:12] 2026-01-13 01:22:14,187 | INFO     | aborting loop
[2026-01-12 20:23:12] 2026-01-13 01:22:14,621 | INFO     | all job control threads have been joined
[2026-01-12 20:23:12] 2026-01-13 01:22:15,191 | INFO     | [job] queue monitor thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,192 | INFO     | [job] retrieve thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,193 | INFO     | [job] job monitor thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,227 | INFO     | all data control threads have been joined
[2026-01-12 20:23:12] 2026-01-13 01:22:15,256 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,262 | INFO     | [data] copytool_in thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,269 | INFO     | [payload] failed_post thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,347 | INFO     | all payload control threads have been joined
[2026-01-12 20:23:12] 2026-01-13 01:22:15,555 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,626 | INFO     | [job] control thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,843 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,847 | INFO     | [job] validate thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:15,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 20:23:12] 2026-01-13 01:22:16,193 | INFO     | [data] copytool_out thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:16,226 | INFO     | [payload] validate_post thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:16,233 | INFO     | [data] control thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:16,353 | INFO     | [payload] control thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:16,495 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:19,898 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 20:23:12] 2026-01-13 01:22:44,126 | INFO     | PID=6865 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 20:23:12] 2026-01-13 01:22:44,126 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 20:23:12] 2026-01-13 01:22:44,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 20:23:12] 2026-01-13 01:22:44,127 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 20:23:12] 2026-01-13 01:23:06,242 | INFO     | [monitor] cgroup control has ended
[2026-01-12 20:23:12] 2026-01-13 01:23:07,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139770110760768)>', '<ExcThread(monitor, started 139769191307008)>']
[2026-01-12 20:23:12] 2026-01-13 01:23:07,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 20:23:12] 2026-01-13 01:23:07,241 | INFO     | [monitor] control thread has ended
[2026-01-12 20:23:12] 2026-01-13 01:23:12,076 | INFO     | all workflow threads have been joined
[2026-01-12 20:23:12] 2026-01-13 01:23:12,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 20:23:12] 2026-01-13 01:23:12,076 | INFO     | traces error code: 0
[2026-01-12 20:23:12] 2026-01-13 01:23:12,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 20:23:12] 2026-01-13 01:23:12,170 [wrapper] ==== pilot stdout END ====
[2026-01-12 20:23:12] 2026-01-13 01:23:12,174 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 20:23:12] 2026-01-13 01:23:12,178 [wrapper] pilotpid: 6865
[2026-01-12 20:23:12] 2026-01-13 01:23:12,182 [wrapper] Pilot exit status: 0
[2026-01-12 20:23:12] 2026-01-13 01:23:12,197 [wrapper] pandaids: 6967960853
[2026-01-12 20:23:12] 2026-01-13 01:23:12,248 [wrapper] cleanup supervisor_pilot 12751 6866
[2026-01-12 20:23:12] 2026-01-13 01:23:12,253 [wrapper] Test setup, not cleaning
[2026-01-12 20:23:12] 2026-01-13 01:23:12,256 [wrapper] apfmon messages muted
[2026-01-12 20:23:12] 2026-01-13 01:23:12,260 [wrapper] ==== wrapper stdout END ====
[2026-01-12 20:23:12] 2026-01-13 01:23:12,264 [wrapper] ==== wrapper stderr END ====
[2026-01-12 20:23:12]  *** Error codes and diagnostics ***
[2026-01-12 20:23:12]     "exeErrorCode": 0,
[2026-01-12 20:23:12]     "exeErrorDiag": "",
[2026-01-12 20:23:12]     "pilotErrorCode": 0,
[2026-01-12 20:23:12]     "pilotErrorDiag": "",
[2026-01-12 20:23:12]  *** Listing of results directory ***
[2026-01-12 20:23:12] total 604696
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 18:27 pilot3.tar.gz
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 18:40 queuedata.json
[2026-01-12 20:23:12] -rwx------ 1 boincer umatlas     36322 Jan 12 18:40 runpilot2-wrapper.sh
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas       100 Jan 12 18:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 20:23:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 18:43 run_atlas
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas       105 Jan 12 18:43 job.xml
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas 323201598 Jan 12 18:43 EVNT.48188663._000004.pool.root.1
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 18:43 start_atlas.sh
[2026-01-12 20:23:12] drwxrwx--x 2 boincer umatlas      4096 Jan 12 18:43 shared
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas    592412 Jan 12 18:43 input.tar.gz
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas         0 Jan 12 18:43 boinc_lockfile
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas      2627 Jan 12 18:43 pandaJob.out
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas        57 Jan 12 18:43 setup.sh.local
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas    988531 Jan 12 18:43 agis_schedconf.cvmfs.json
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas   1516240 Jan 12 18:43 agis_ddmendpoints.agis.ALL.json
[2026-01-12 20:23:12] drwx------ 5 boincer umatlas      4096 Jan 12 18:43 pilot3
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas      5952 Jan 12 20:19 init_data.xml
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas 289491759 Jan 12 20:21 HITS.48188665._000094.pool.root.1
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas       529 Jan 12 20:21 boinc_task_state.xml
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas      1047 Jan 12 20:21 memory_monitor_summary.json
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas    460321 Jan 12 20:22 log.48188665._000094.job.log.tgz.1
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas      7843 Jan 12 20:22 heartbeat.json
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas        95 Jan 12 20:22 pilot_heartbeat.json
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 20:22 boinc_mmap_file
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas        27 Jan 12 20:22 wrapper_checkpoint.txt
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas      4745 Jan 12 20:23 pilotlog.txt
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas    838389 Jan 12 20:23 log.48188665._000094.job.log.1
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas       357 Jan 12 20:23 output.list
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas       620 Jan 12 20:23 runtime_log
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas   1320960 Jan 12 20:23 result.tar.gz
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 20:23 runtime_log.err
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas       659 Jan 12 20:23 NrHNDmuhgz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmErnKDmURnRSm.diag
[2026-01-12 20:23:12] -rw-r--r-- 1 boincer umatlas     22279 Jan 12 20:23 stderr.txt
[2026-01-12 20:23:12] HITS file was successfully produced:
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas 289491759 Jan 12 20:21 shared/HITS.pool.root.1
[2026-01-12 20:23:12]  *** Contents of shared directory: ***
[2026-01-12 20:23:12] total 600228
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas 323201598 Jan 12 18:43 ATLAS.root_0
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 18:43 start_atlas.sh
[2026-01-12 20:23:12] -rw-r--r-- 2 boincer umatlas    592412 Jan 12 18:43 input.tar.gz
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas 289491759 Jan 12 20:21 HITS.pool.root.1
[2026-01-12 20:23:12] -rw------- 1 boincer umatlas   1320960 Jan 12 20:23 result.tar.gz
20:23:14 (2790): run_atlas exited; CPU time 64043.776657
20:23:14 (2790): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN