Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:41:38 (6785): wrapper (7.7.26015): starting
18:41:38 (6785): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 18:41:38] Arguments: --nthreads 12
[2026-01-12 18:41:38] Threads: 12
[2026-01-12 18:41:38] Checking for CVMFS
[2026-01-12 18:41:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 18:41:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 18:41:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 18:41:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 18:41:39] 2.11.2.0 30551 185976 95920 155070 3 1 19386521 20275201 1 130560 0 72421171 99.893 11080802 29960 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 18:41:39] CVMFS is ok
[2026-01-12 18:41:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 18:41:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 18:41:39] Further information can be found at the LHC@home message board.
[2026-01-12 18:41:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 18:41:39] Checking for apptainer binary...
[2026-01-12 18:41:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 18:41:39] Running /usr/bin/apptainer --version
[2026-01-12 18:41:39] apptainer version 1.3.2-1.el7
[2026-01-12 18:41:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 18:41:40] c-205-16.aglt2.org
[2026-01-12 18:41:40] apptainer works
[2026-01-12 18:41:40] Set ATHENA_PROC_NUMBER=12
[2026-01-12 18:41:40] Set ATHENA_CORE_NUMBER=12
[2026-01-12 18:41:40] Starting ATLAS job with PandaID=6967960868
[2026-01-12 18:41:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 20:16:36]  *** The last 200 lines of the pilot log: ***
[2026-01-12 20:16:36] 2026-01-13 01:15:54,480 | INFO     | summary of transferred files:
[2026-01-12 20:16:36] 2026-01-13 01:15:54,480 | INFO     |  -- lfn=log.48188665._000109.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 20:16:36] 2026-01-13 01:15:54,480 | INFO     | stage-out finished correctly
[2026-01-12 20:16:36] 2026-01-13 01:15:54,604 | INFO     | time since job start (5638s) is within the limit (349056.0s)
[2026-01-12 20:16:36] 2026-01-13 01:15:56,193 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 20:16:36] 2026-01-13 01:15:56,610 | INFO     | time since job start (5640s) is within the limit (349056.0s)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,139 | WARNING  | process 16993 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 20:16:36] 2026-01-13 01:15:58,139 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967960868/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,149 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967960868/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,150 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-12 20:16:36] 2026-01-13 01:15:58,150 | WARNING  | maxPSS not found in memory monitor output
[2026-01-12 20:16:36] 2026-01-13 01:15:58,150 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4356064 B
[2026-01-12 20:16:36] 2026-01-13 01:15:58,151 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15831 B
[2026-01-12 20:16:36] 2026-01-13 01:15:58,151 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 20:16:36] 2026-01-13 01:15:58,167 | INFO     | sufficient remaining disk space (29204938752 B)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,168 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,168 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6967960868: 4661513 B (within 4404019200 B limit)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,169 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6967960868/HITS.48188665._000109.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,169 | INFO     | total size of present files: 0 B (workdir size: 4661513 B)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,169 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6967960868/HITS.48188665._000109.pool.root.1 since it does not exist
[2026-01-12 20:16:36] 2026-01-13 01:15:58,259 | INFO     | number of running child processes to parent process 16993: 1
[2026-01-12 20:16:36] 2026-01-13 01:15:58,260 | INFO     | maximum number of monitored processes: 6
[2026-01-12 20:16:36] 2026-01-13 01:15:58,441 | INFO     | job 6967960868 has state=finished
[2026-01-12 20:16:36] 2026-01-13 01:15:58,442 | INFO     | preparing for final server update for job 6967960868 in state='finished'
[2026-01-12 20:16:36] 2026-01-13 01:15:58,442 | INFO     | this job has now completed (state=finished)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,442 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,443 | INFO     | log transfer has been attempted: DONE
[2026-01-12 20:16:36] 2026-01-13 01:15:58,443 | INFO     | job 6967960868 has finished - writing final server update
[2026-01-12 20:16:36] 2026-01-13 01:15:58,443 | INFO     | total number of processed events: 400 (read)
[2026-01-12 20:16:36] 2026-01-13 01:15:58,444 | INFO     | executing command: lscpu
[2026-01-12 20:16:36] 2026-01-13 01:15:58,468 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 20:16:36] 2026-01-13 01:15:58,616 | INFO     | time since job start (5642s) is within the limit (349056.0s)
[2026-01-12 20:16:36] 2026-01-13 01:15:59,735 | INFO     | PID=10498 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 20:16:36] 2026-01-13 01:16:00,735 | INFO     | time since job start (5644s) is within the limit (349056.0s)
[2026-01-12 20:16:36] 2026-01-13 01:16:00,762 | INFO     | monitor loop #420: job 0:6967960868 is in state 'finished'
[2026-01-12 20:16:36] 2026-01-13 01:16:00,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 20:16:36] 2026-01-13 01:16:02,741 | INFO     | time since job start (5646s) is within the limit (349056.0s)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,012 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 20:16:36] 2026-01-13 01:16:03,014 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2026-01-12 20:16:36] 2026-01-13 01:16:03,016 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967960868/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,017 | INFO     | extracted standard info from prmon json
[2026-01-12 20:16:36] 2026-01-13 01:16:03,017 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 20:16:36] 2026-01-13 01:16:03,017 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 20:16:36] 2026-01-13 01:16:03,017 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 20:16:36] 2026-01-13 01:16:03,017 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 20:16:36] 2026-01-13 01:16:03,019 | INFO     | fitting pss+swap vs Time
[2026-01-12 20:16:36] 2026-01-13 01:16:03,019 | INFO     | sum of square deviations: 190403570.0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,019 | INFO     | sum of deviations: -10557444155.000002
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | mean x: 1768264212.0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | mean y: 2842839.411764706
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | intersect: 98049064711.59138
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | chi2: 0.10344810347045919
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | current memory leak: -55.45 B/s (using 85 data points, chi2=0.10)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,020 | INFO     | could have reported an average CPU frequency of 2052 MHz (7 samples)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | ..............................
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . Timing measurements:
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . get job = 0 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . initial setup = 2 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . payload setup = 7 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . stage-in = 0 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . payload execution = 5610 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . stage-out = 0 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,021 | INFO     | . log creation = 0 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,022 | INFO     | ..............................
[2026-01-12 20:16:36] 2026-01-13 01:16:03,102 | INFO     | 
[2026-01-12 20:16:36] 2026-01-13 01:16:03,102 | INFO     | job summary report
[2026-01-12 20:16:36] 2026-01-13 01:16:03,102 | INFO     | --------------------------------------------------
[2026-01-12 20:16:36] 2026-01-13 01:16:03,102 | INFO     | PanDA job id: 6967960868
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | task id: 48188665
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | errors: (none)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | pilot state: finished 
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | transexitcode: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,103 | INFO     | exeerrorcode: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | exeerrordiag: 
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | exitcode: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | exitmsg: OK
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | cpuconsumptiontime: 61613 s
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | nevents: 400
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | neventsw: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,104 | INFO     | pid: 16993
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | pgrp: 16993
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | corecount: 12
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | event service: False
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | sizes: {0: 2284125, 5: 2284387, 11: 2284443, 5621: 2311042, 5622: 2320040, 5623: 2320096, 5630: 2320446}
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | --------------------------------------------------
[2026-01-12 20:16:36] 2026-01-13 01:16:03,105 | INFO     | 
[2026-01-12 20:16:36] 2026-01-13 01:16:03,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 20:16:36] 2026-01-13 01:16:03,129 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,132 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,133 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 20:16:36] 2026-01-13 01:16:03,133 | INFO     | job 6967960868 has completed (purged errors)
[2026-01-12 20:16:36] 2026-01-13 01:16:03,133 | INFO     | overall cleanup function is called
[2026-01-12 20:16:36] 2026-01-13 01:16:04,141 | INFO     | --- collectZombieJob: --- 10, [16993]
[2026-01-12 20:16:36] 2026-01-13 01:16:04,141 | INFO     | zombie collector waiting for pid 16993
[2026-01-12 20:16:36] 2026-01-13 01:16:04,141 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 20:16:36] 2026-01-13 01:16:04,142 | INFO     | collected zombie processes
[2026-01-12 20:16:36] 2026-01-13 01:16:04,142 | INFO     | will attempt to kill all subprocesses of pid=16993
[2026-01-12 20:16:36] 2026-01-13 01:16:04,234 | INFO     | process IDs to be killed: [16993] (in reverse order)
[2026-01-12 20:16:36] 2026-01-13 01:16:04,280 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 20:16:36] 2026-01-13 01:16:04,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 20:16:36] 2026-01-13 01:16:04,283 | INFO     | did not find any defunct processes belonging to 16993
[2026-01-12 20:16:36] 2026-01-13 01:16:04,285 | INFO     | did not find any defunct processes belonging to 16993
[2026-01-12 20:16:36] 2026-01-13 01:16:04,286 | INFO     | ready for new job
[2026-01-12 20:16:36] 2026-01-13 01:16:04,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 20:16:36] 2026-01-13 01:16:04,287 | INFO     | ***************************************
[2026-01-12 20:16:36] 2026-01-13 01:16:04,287 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 20:16:36] 2026-01-13 01:16:04,287 | INFO     | ***************************************
[2026-01-12 20:16:36] 2026-01-13 01:16:04,287 | INFO     | 
[2026-01-12 20:16:36] 2026-01-13 01:16:04,288 | INFO     | architecture information:
[2026-01-12 20:16:36] 2026-01-13 01:16:04,288 | INFO     | executing command: cat /etc/os-release
[2026-01-12 20:16:36] 2026-01-13 01:16:04,302 | INFO     | cat /etc/os-release:
[2026-01-12 20:16:36] NAME="CentOS Linux"
[2026-01-12 20:16:36] VERSION="7 (Core)"
[2026-01-12 20:16:36] ID="centos"
[2026-01-12 20:16:36] ID_LIKE="rhel fedora"
[2026-01-12 20:16:36] VERSION_ID="7"
[2026-01-12 20:16:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 20:16:36] ANSI_COLOR="0;31"
[2026-01-12 20:16:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 20:16:36] HOME_URL="https://www.centos.org/"
[2026-01-12 20:16:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 20:16:36] 
[2026-01-12 20:16:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 20:16:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 20:16:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 20:16:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 20:16:36] 
[2026-01-12 20:16:36] 2026-01-13 01:16:04,303 | INFO     | ***************************************
[2026-01-12 20:16:36] 2026-01-13 01:16:04,806 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 20:16:36] 2026-01-13 01:16:04,821 | INFO     | sufficient remaining disk space (29210181632 B)
[2026-01-12 20:16:36] 2026-01-13 01:16:04,822 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 20:16:36] 2026-01-13 01:16:04,822 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 20:16:36] 2026-01-13 01:16:04,822 | INFO     | update_server=False
[2026-01-12 20:16:36] 2026-01-13 01:16:04,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 20:16:36] 2026-01-13 01:16:04,823 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:16:36] 2026-01-13 01:16:04,823 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:16:36] 2026-01-13 01:16:04,823 | INFO     | aborting loop
[2026-01-12 20:16:36] 2026-01-13 01:16:04,948 | INFO     | [monitor] cgroup control has ended
[2026-01-12 20:16:36] 2026-01-13 01:16:05,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 20:16:36] 2026-01-13 01:16:05,409 | INFO     | all data control threads have been joined
[2026-01-12 20:16:36] 2026-01-13 01:16:05,462 | INFO     | all payload control threads have been joined
[2026-01-12 20:16:36] 2026-01-13 01:16:05,828 | INFO     | [job] retrieve thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:05,829 | INFO     | [job] queue monitor thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:05,829 | INFO     | [job] job monitor thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:05,838 | INFO     | [payload] validate_post thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,070 | INFO     | [data] copytool_in thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,115 | INFO     | all job control threads have been joined
[2026-01-12 20:16:36] 2026-01-13 01:16:06,399 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,403 | INFO     | [job] validate thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,414 | INFO     | [data] control thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,468 | INFO     | [payload] control thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,504 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:06,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 20:16:36] 2026-01-13 01:16:06,870 | INFO     | [payload] failed_post thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:07,082 | INFO     | [data] copytool_out thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:07,120 | INFO     | [job] control thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:07,160 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:10,788 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:15,123 | INFO     | job.realtimelogging is not enabled
[2026-01-12 20:16:36] 2026-01-13 01:16:16,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 20:16:36] 2026-01-13 01:16:17,914 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735667337024)>', '<ExcThread(monitor, started 139735368439552)>']
[2026-01-12 20:16:36] 2026-01-13 01:16:22,939 | INFO     | all workflow threads have been joined
[2026-01-12 20:16:36] 2026-01-13 01:16:22,939 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 20:16:36] 2026-01-13 01:16:22,942 | INFO     | traces error code: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:22,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 20:16:36] 2026-01-13 01:16:35,945 | INFO     | PID=10498 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | CRITICAL | thread 'MainThread' is not alive
[2026-01-12 20:16:36] 2026-01-13 01:16:35,946 | INFO     | [monitor] control thread has ended
[2026-01-12 20:16:36] 2026-01-13 01:16:36,037 [wrapper] ==== pilot stdout END ====
[2026-01-12 20:16:36] 2026-01-13 01:16:36,041 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 20:16:36] 2026-01-13 01:16:36,045 [wrapper] pilotpid: 10498
[2026-01-12 20:16:36] 2026-01-13 01:16:36,049 [wrapper] Pilot exit status: 0
[2026-01-12 20:16:36] 2026-01-13 01:16:36,065 [wrapper] pandaids: 6967960868
[2026-01-12 20:16:36] 2026-01-13 01:16:36,107 [wrapper] cleanup supervisor_pilot 28768 10499
[2026-01-12 20:16:36] 2026-01-13 01:16:36,112 [wrapper] Test setup, not cleaning
[2026-01-12 20:16:36] 2026-01-13 01:16:36,116 [wrapper] apfmon messages muted
[2026-01-12 20:16:36] 2026-01-13 01:16:36,120 [wrapper] ==== wrapper stdout END ====
[2026-01-12 20:16:36] 2026-01-13 01:16:36,124 [wrapper] ==== wrapper stderr END ====
[2026-01-12 20:16:36]  *** Error codes and diagnostics ***
[2026-01-12 20:16:36]     "exeErrorCode": 0,
[2026-01-12 20:16:36]     "exeErrorDiag": "",
[2026-01-12 20:16:36]     "pilotErrorCode": 0,
[2026-01-12 20:16:36]     "pilotErrorDiag": "",
[2026-01-12 20:16:36]  *** Listing of results directory ***
[2026-01-12 20:16:36] total 582512
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 18:27 pilot3.tar.gz
[2026-01-12 20:16:36] -rwx------ 1 boincer umatlas     36322 Jan 12 18:40 runpilot2-wrapper.sh
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 18:40 queuedata.json
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas       100 Jan 12 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 20:16:36] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 18:41 run_atlas
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas       105 Jan 12 18:41 job.xml
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas 318032226 Jan 12 18:41 EVNT.48188663._000005.pool.root.1
[2026-01-12 20:16:36] drwxrwx--x 2 boincer umatlas      4096 Jan 12 18:41 shared
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas    592403 Jan 12 18:41 input.tar.gz
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 18:41 start_atlas.sh
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas         0 Jan 12 18:41 boinc_lockfile
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas      2629 Jan 12 18:41 pandaJob.out
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas        57 Jan 12 18:41 setup.sh.local
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas    988531 Jan 12 18:41 agis_schedconf.cvmfs.json
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas   1516240 Jan 12 18:41 agis_ddmendpoints.agis.ALL.json
[2026-01-12 20:16:36] drwx------ 5 boincer umatlas      4096 Jan 12 18:41 pilot3
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas      5953 Jan 12 20:11 init_data.xml
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas 272046761 Jan 12 20:15 HITS.48188665._000109.pool.root.1
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas       529 Jan 12 20:15 boinc_task_state.xml
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas      1047 Jan 12 20:15 memory_monitor_summary.json
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas    438384 Jan 12 20:15 log.48188665._000109.job.log.tgz.1
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas      7842 Jan 12 20:16 heartbeat.json
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 20:16 boinc_mmap_file
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas        27 Jan 12 20:16 wrapper_checkpoint.txt
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas       815 Jan 12 20:16 pilotlog.txt
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas        95 Jan 12 20:16 pilot_heartbeat.json
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas    808886 Jan 12 20:16 log.48188665._000109.job.log.1
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas       357 Jan 12 20:16 output.list
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas       620 Jan 12 20:16 runtime_log
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas   1269760 Jan 12 20:16 result.tar.gz
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 20:16 runtime_log.err
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas       659 Jan 12 20:16 fZzLDmthgz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmg1hKDm7VWqem.diag
[2026-01-12 20:16:36] -rw-r--r-- 1 boincer umatlas     22482 Jan 12 20:16 stderr.txt
[2026-01-12 20:16:36] HITS file was successfully produced:
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas 272046761 Jan 12 20:15 shared/HITS.pool.root.1
[2026-01-12 20:16:36]  *** Contents of shared directory: ***
[2026-01-12 20:16:36] total 578096
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas 318032226 Jan 12 18:41 ATLAS.root_0
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas    592403 Jan 12 18:41 input.tar.gz
[2026-01-12 20:16:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 18:41 start_atlas.sh
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas 272046761 Jan 12 20:15 HITS.pool.root.1
[2026-01-12 20:16:36] -rw------- 1 boincer umatlas   1269760 Jan 12 20:16 result.tar.gz
20:16:37 (6785): run_atlas exited; CPU time 61594.312994
20:16:37 (6785): called boinc_finish(0)

</stderr_txt>
]]>

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