Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:08:29 (1624): wrapper (7.7.26015): starting
23:08:29 (1624): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 23:08:29] Arguments: --nthreads 8
[2026-01-12 23:08:29] Threads: 8
[2026-01-12 23:08:29] Checking for CVMFS
[2026-01-12 23:08:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 23:08:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 23:08:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 23:08:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 23:08:32] 2.11.2.0 13921 40298 131408 155066 3 101 23923725 25165824 1104 130560 0 17396585 99.835 10214377 3848 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 23:08:32] CVMFS is ok
[2026-01-12 23:08:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 23:08:32] Checking for apptainer binary...
[2026-01-12 23:08:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 23:08:32] Running /usr/bin/apptainer --version
[2026-01-12 23:08:32] apptainer version 1.3.2-1.el7
[2026-01-12 23:08:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 23:09:12] cg-vwn367.simple-grid.lan
[2026-01-12 23:09:12] apptainer works
[2026-01-12 23:09:13] Set ATHENA_PROC_NUMBER=8
[2026-01-12 23:09:13] Set ATHENA_CORE_NUMBER=8
[2026-01-12 23:09:13] Starting ATLAS job with PandaID=6967681838
[2026-01-12 23:09:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 05:05:08]  *** The last 200 lines of the pilot log: ***
[2026-01-13 05:05:08] 2026-01-13 04:04:29,167 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-13 05:05:08] 2026-01-13 04:04:29,169 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6967681838/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,170 | INFO     | extracted standard info from prmon json
[2026-01-13 05:05:08] 2026-01-13 04:04:29,170 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 05:05:08] 2026-01-13 04:04:29,170 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 05:05:08] 2026-01-13 04:04:29,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 05:05:08] 2026-01-13 04:04:29,171 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 05:05:08] 2026-01-13 04:04:29,178 | INFO     | fitting pss+swap vs Time
[2026-01-13 05:05:08] 2026-01-13 04:04:29,179 | INFO     | sum of square deviations: 11762304260.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,183 | INFO     | sum of deviations: 144567158131.99997
[2026-01-13 05:05:08] 2026-01-13 04:04:29,183 | INFO     | mean x: 1768266776.5
[2026-01-13 05:05:08] 2026-01-13 04:04:29,183 | INFO     | mean y: 2541836.386904762
[2026-01-13 05:05:08] 2026-01-13 04:04:29,183 | INFO     | intersect: -21730725476.478657
[2026-01-13 05:05:08] 2026-01-13 04:04:29,184 | INFO     | chi2: 6.1273740175144376
[2026-01-13 05:05:08] 2026-01-13 04:04:29,185 | INFO     | sum of square deviations: 11244973630.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,188 | INFO     | sum of deviations: 141964071521.00006
[2026-01-13 05:05:08] 2026-01-13 04:04:29,188 | INFO     | mean x: 1768266624.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,189 | INFO     | mean y: 2541069.3595166164
[2026-01-13 05:05:08] 2026-01-13 04:04:29,189 | INFO     | intersect: -22321240002.747215
[2026-01-13 05:05:08] 2026-01-13 04:04:29,189 | INFO     | chi2: 6.1329515093956015
[2026-01-13 05:05:08] 2026-01-13 04:04:29,190 | INFO     | current chi2=6.1329515093956015 (change=-0.09102581081587816 %)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,190 | INFO     | right removable region: 330
[2026-01-13 05:05:08] 2026-01-13 04:04:29,191 | INFO     | sum of square deviations: 11244973630.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,194 | INFO     | sum of deviations: 26929321324.000004
[2026-01-13 05:05:08] 2026-01-13 04:04:29,195 | INFO     | mean x: 1768266929.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,195 | INFO     | mean y: 2576492.1419939576
[2026-01-13 05:05:08] 2026-01-13 04:04:29,195 | INFO     | intersect: -4232046894.6665792
[2026-01-13 05:05:08] 2026-01-13 04:04:29,195 | INFO     | chi2: 1.6519713406416923
[2026-01-13 05:05:08] 2026-01-13 04:04:29,196 | INFO     | current chi2=1.6519713406416923 (change=73.03948908749963 %)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,196 | INFO     | sum of square deviations: 10743038637.5
[2026-01-13 05:05:08] 2026-01-13 04:04:29,200 | INFO     | sum of deviations: -33684247031.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,200 | INFO     | mean x: 1768267081.5
[2026-01-13 05:05:08] 2026-01-13 04:04:29,200 | INFO     | mean y: 2594832.490797546
[2026-01-13 05:05:08] 2026-01-13 04:04:29,200 | INFO     | intersect: 5546905636.895779
[2026-01-13 05:05:08] 2026-01-13 04:04:29,201 | INFO     | chi2: 0.24541974661510862
[2026-01-13 05:05:08] 2026-01-13 04:04:29,201 | INFO     | current chi2=0.24541974661510862 (change=85.14382540560432 %)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,201 | INFO     | sum of square deviations: 10256266720.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,205 | INFO     | sum of deviations: -39702910973.00001
[2026-01-13 05:05:08] 2026-01-13 04:04:29,205 | INFO     | mean x: 1768267234.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,205 | INFO     | mean y: 2596705.0404984425
[2026-01-13 05:05:08] 2026-01-13 04:04:29,205 | INFO     | intersect: 6847714766.476305
[2026-01-13 05:05:08] 2026-01-13 04:04:29,206 | INFO     | chi2: 0.21587112756441668
[2026-01-13 05:05:08] 2026-01-13 04:04:29,206 | INFO     | current chi2=0.21587112756441668 (change=12.040033232139628 %)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,206 | INFO     | left removable region: 30
[2026-01-13 05:05:08] 2026-01-13 04:04:29,207 | INFO     | sum of square deviations: 8372156975.0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,210 | INFO     | sum of deviations: -11529689177.999998
[2026-01-13 05:05:08] 2026-01-13 04:04:29,210 | INFO     | mean x: 1768267508.5
[2026-01-13 05:05:08] 2026-01-13 04:04:29,210 | INFO     | mean y: 2587074.553333333
[2026-01-13 05:05:08] 2026-01-13 04:04:29,210 | INFO     | intersect: 2437751013.4809675
[2026-01-13 05:05:08] 2026-01-13 04:04:29,211 | INFO     | chi2: 0.15155082598532377
[2026-01-13 05:05:08] 2026-01-13 04:04:29,211 | INFO     | current memory leak: -1.38 B/s (using 300 data points, chi2=0.15)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,212 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,212 | INFO     | ..............................
[2026-01-13 05:05:08] 2026-01-13 04:04:29,212 | INFO     | . Timing measurements:
[2026-01-13 05:05:08] 2026-01-13 04:04:29,212 | INFO     | . get job = 0 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . initial setup = 12 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . payload setup = 151 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . stage-in = 0 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . payload execution = 20684 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . stage-out = 1 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | . log creation = 0 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,213 | INFO     | ..............................
[2026-01-13 05:05:08] 2026-01-13 04:04:29,332 | INFO     | 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | job summary report
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | --------------------------------------------------
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | PanDA job id: 6967681838
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | task id: 48188598
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | errors: (none)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | pilot state: finished 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | transexitcode: 0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,333 | INFO     | exeerrorcode: 0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | exeerrordiag: 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | exitcode: 0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | exitmsg: OK
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | cpuconsumptiontime: 82066 s
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | nevents: 400
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | neventsw: 0
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | pid: 11864
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | pgrp: 11864
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | corecount: 8
[2026-01-13 05:05:08] 2026-01-13 04:04:29,334 | INFO     | event service: False
[2026-01-13 05:05:08] 2026-01-13 04:04:29,335 | INFO     | sizes: {0: 2283950, 1: 2284149, 12: 2284149, 22: 2284177, 33: 2284205, 44: 2284261, 54: 2284417, 65: 2284445, 76: 2284473, 86: 2284529, 97: 2284557, 107: 2285127, 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,335 | INFO     | --------------------------------------------------
[2026-01-13 05:05:08] 2026-01-13 04:04:29,335 | INFO     | 
[2026-01-13 05:05:08] 2026-01-13 04:04:29,335 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-13 05:05:08] 2026-01-13 04:04:29,361 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,362 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,363 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | job 6967681838 has completed (purged errors)
[2026-01-13 05:05:08] 2026-01-13 04:04:29,364 | INFO     | overall cleanup function is called
[2026-01-13 05:05:08] 2026-01-13 04:04:30,373 | INFO     | --- collectZombieJob: --- 10, [11864]
[2026-01-13 05:05:08] 2026-01-13 04:04:30,373 | INFO     | zombie collector waiting for pid 11864
[2026-01-13 05:05:08] 2026-01-13 04:04:30,374 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 05:05:08] 2026-01-13 04:04:30,374 | INFO     | collected zombie processes
[2026-01-13 05:05:08] 2026-01-13 04:04:30,374 | INFO     | will attempt to kill all subprocesses of pid=11864
[2026-01-13 05:05:08] 2026-01-13 04:04:30,442 | INFO     | process IDs to be killed: [11864] (in reverse order)
[2026-01-13 05:05:08] 2026-01-13 04:04:30,506 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 05:05:08] 2026-01-13 04:04:30,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 05:05:08] 2026-01-13 04:04:30,509 | INFO     | did not find any defunct processes belonging to 11864
[2026-01-13 05:05:08] 2026-01-13 04:04:30,511 | INFO     | did not find any defunct processes belonging to 11864
[2026-01-13 05:05:08] 2026-01-13 04:04:30,512 | INFO     | ready for new job
[2026-01-13 05:05:08] 2026-01-13 04:04:30,512 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 05:05:08] 2026-01-13 04:04:30,514 | INFO     | ***************************************
[2026-01-13 05:05:08] 2026-01-13 04:04:30,515 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 05:05:08] 2026-01-13 04:04:30,515 | INFO     | ***************************************
[2026-01-13 05:05:08] 2026-01-13 04:04:30,515 | INFO     | 
[2026-01-13 05:05:08] 2026-01-13 04:04:30,515 | INFO     | pilot is running in a VM
[2026-01-13 05:05:08] 2026-01-13 04:04:30,516 | INFO     | architecture information:
[2026-01-13 05:05:08] 2026-01-13 04:04:30,516 | INFO     | executing command: cat /etc/os-release
[2026-01-13 05:05:08] 2026-01-13 04:04:30,536 | INFO     | cat /etc/os-release:
[2026-01-13 05:05:08] NAME="CentOS Linux"
[2026-01-13 05:05:08] VERSION="7 (Core)"
[2026-01-13 05:05:08] ID="centos"
[2026-01-13 05:05:08] ID_LIKE="rhel fedora"
[2026-01-13 05:05:08] VERSION_ID="7"
[2026-01-13 05:05:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 05:05:08] ANSI_COLOR="0;31"
[2026-01-13 05:05:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 05:05:08] HOME_URL="https://www.centos.org/"
[2026-01-13 05:05:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 05:05:08] 
[2026-01-13 05:05:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 05:05:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 05:05:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 05:05:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 05:05:08] 
[2026-01-13 05:05:08] 2026-01-13 04:04:30,536 | INFO     | ***************************************
[2026-01-13 05:05:08] 2026-01-13 04:04:31,039 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-13 05:05:08] 2026-01-13 04:04:31,065 | INFO     | sufficient remaining disk space (494100545536 B)
[2026-01-13 05:05:08] 2026-01-13 04:04:31,065 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 05:05:08] 2026-01-13 04:04:31,065 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 05:05:08] 2026-01-13 04:04:31,066 | INFO     | update_server=False
[2026-01-13 05:05:08] 2026-01-13 04:04:31,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 05:05:08] 2026-01-13 04:04:31,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:05:08] 2026-01-13 04:04:31,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:05:08] 2026-01-13 04:04:31,067 | INFO     | aborting loop
[2026-01-13 05:05:08] 2026-01-13 04:04:31,569 | INFO     | all payload control threads have been joined
[2026-01-13 05:05:08] 2026-01-13 04:04:31,763 | INFO     | all data control threads have been joined
[2026-01-13 05:05:08] 2026-01-13 04:04:32,070 | INFO     | [job] retrieve thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,071 | INFO     | [job] queue monitor thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,072 | INFO     | [job] job monitor thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,207 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 05:05:08] 2026-01-13 04:04:32,263 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 05:05:08] 2026-01-13 04:04:32,442 | INFO     | all job control threads have been joined
[2026-01-13 05:05:08] 2026-01-13 04:04:32,560 | INFO     | [job] validate thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,575 | INFO     | [payload] control thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,691 | INFO     | [payload] validate_post thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,769 | INFO     | [data] control thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:32,976 | INFO     | [data] copytool_in thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:33,170 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:33,345 | INFO     | [payload] failed_post thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:33,447 | INFO     | [job] control thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:34,225 | INFO     | [data] copytool_out thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:36,323 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:04:42,086 | INFO     | job.realtimelogging is not enabled
[2026-01-13 05:05:08] 2026-01-13 04:04:43,088 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 05:05:08] 2026-01-13 04:05:00,929 | INFO     | 21077s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-13 05:05:08] 2026-01-13 04:05:01,830 | INFO     | [monitor] cgroup control has ended
[2026-01-13 05:05:08] 2026-01-13 04:05:02,025 | INFO     | PID=5362 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-13 05:05:08] 2026-01-13 04:05:02,025 | INFO     | .. there are 2 such processes running
[2026-01-13 05:05:08] 2026-01-13 04:05:02,025 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 05:05:08] 2026-01-13 04:05:02,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 05:05:08] 2026-01-13 04:05:02,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 05:05:08] 2026-01-13 04:05:02,756 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140624478062400)>', '<ExcThread(monitor, started 140624024016640)>']
[2026-01-13 05:05:08] 2026-01-13 04:05:03,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 05:05:08] 2026-01-13 04:05:03,031 | INFO     | [monitor] control thread has ended
[2026-01-13 05:05:08] 2026-01-13 04:05:07,781 | INFO     | all workflow threads have been joined
[2026-01-13 05:05:08] 2026-01-13 04:05:07,782 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 05:05:08] 2026-01-13 04:05:07,782 | INFO     | traces error code: 0
[2026-01-13 05:05:08] 2026-01-13 04:05:07,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 05:05:08] 2026-01-13 04:05:07,928 [wrapper] ==== pilot stdout END ====
[2026-01-13 05:05:08] 2026-01-13 04:05:07,931 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 05:05:08] 2026-01-13 04:05:07,937 [wrapper] pilotpid: 5362
[2026-01-13 05:05:08] 2026-01-13 04:05:07,941 [wrapper] Pilot exit status: 0
[2026-01-13 05:05:08] 2026-01-13 04:05:07,971 [wrapper] pandaids: 6967681838
[2026-01-13 05:05:08] 2026-01-13 04:05:08,006 [wrapper] cleanup supervisor_pilot 12327 5363
[2026-01-13 05:05:08] 2026-01-13 04:05:08,013 [wrapper] Test setup, not cleaning
[2026-01-13 05:05:08] 2026-01-13 04:05:08,017 [wrapper] apfmon messages muted
[2026-01-13 05:05:08] 2026-01-13 04:05:08,031 [wrapper] ==== wrapper stdout END ====
[2026-01-13 05:05:08] 2026-01-13 04:05:08,035 [wrapper] ==== wrapper stderr END ====
[2026-01-13 05:05:08]  *** Error codes and diagnostics ***
[2026-01-13 05:05:08]     "exeErrorCode": 0,
[2026-01-13 05:05:08]     "exeErrorDiag": "",
[2026-01-13 05:05:08]     "pilotErrorCode": 0,
[2026-01-13 05:05:08]     "pilotErrorDiag": "",
[2026-01-13 05:05:08]  *** Listing of results directory ***
[2026-01-13 05:05:08] total 629388
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc    579449 Jan 12 21:16 pilot3.tar.gz
[2026-01-13 05:05:08] -rwx------. 1 boinc boinc     36322 Jan 12 21:41 runpilot2-wrapper.sh
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc      5112 Jan 12 21:41 queuedata.json
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc       100 Jan 12 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 05:05:08] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 23:08 run_atlas
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc       105 Jan 12 23:08 job.xml
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc      6390 Jan 12 23:08 init_data.xml
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc 349143069 Jan 12 23:08 EVNT.48188594._000001.pool.root.1
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc     15847 Jan 12 23:08 start_atlas.sh
[2026-01-13 05:05:08] drwxrwx--x. 2 boinc boinc        68 Jan 12 23:08 shared
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc    592399 Jan 12 23:08 input.tar.gz
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc         0 Jan 12 23:08 boinc_lockfile
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc      2628 Jan 12 23:09 pandaJob.out
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc    988547 Jan 12 23:13 agis_schedconf.cvmfs.json
[2026-01-13 05:05:08] drwx------. 5 boinc boinc      4096 Jan 12 23:13 pilot3
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc 284526203 Jan 13 05:03 HITS.48188598._000014.pool.root.1
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc       531 Jan 13 05:03 boinc_task_state.xml
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc      1010 Jan 13 05:04 memory_monitor_summary.json
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc   1516240 Jan 13 05:04 agis_ddmendpoints.agis.ALL.json
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc    652634 Jan 13 05:04 log.48188598._000014.job.log.tgz.1
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc        95 Jan 13 05:04 pilot_heartbeat.json
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc      7761 Jan 13 05:04 heartbeat.json
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc      8192 Jan 13 05:04 boinc_mmap_file
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc        28 Jan 13 05:04 wrapper_checkpoint.txt
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc      5071 Jan 13 05:05 pilotlog.txt
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc   2805864 Jan 13 05:05 log.48188598._000014.job.log.1
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc       357 Jan 13 05:05 output.list
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc       620 Jan 13 05:05 runtime_log
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc   3481600 Jan 13 05:05 result.tar.gz
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc      8817 Jan 13 05:05 runtime_log.err
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc       657 Jan 13 05:05 70lLDm0tdz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXnnKDm5kXD8m.diag
[2026-01-13 05:05:08] -rw-r--r--. 1 boinc boinc     20812 Jan 13 05:05 stderr.txt
[2026-01-13 05:05:08] HITS file was successfully produced:
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc 284526203 Jan 13 05:03 shared/HITS.pool.root.1
[2026-01-13 05:05:08]  *** Contents of shared directory: ***
[2026-01-13 05:05:08] total 622820
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc 349143069 Jan 12 23:08 ATLAS.root_0
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc     15847 Jan 12 23:08 start_atlas.sh
[2026-01-13 05:05:08] -rw-r--r--. 2 boinc boinc    592399 Jan 12 23:08 input.tar.gz
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc 284526203 Jan 13 05:03 HITS.pool.root.1
[2026-01-13 05:05:08] -rw-------. 1 boinc boinc   3481600 Jan 13 05:05 result.tar.gz
05:05:09 (1624): run_atlas exited; CPU time 82284.419682
05:05:09 (1624): called boinc_finish(0)

</stderr_txt>
]]>

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