Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:57:10 (19523): wrapper (7.7.26015): starting
13:57:10 (19523): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 13:57:10] Arguments: --nthreads 12
[2026-01-12 13:57:10] Threads: 12
[2026-01-12 13:57:10] Checking for CVMFS
[2026-01-12 13:57:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:57:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:57:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:57:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:57:11] 2.11.2.0 2947 355704 95560 155062 2 81 18656354 20275200 1 130560 1 150517671 99.953 20965948 14939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 13:57:11] CVMFS is ok
[2026-01-12 13:57:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 13:57:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 13:57:11] Further information can be found at the LHC@home message board.
[2026-01-12 13:57:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:57:11] Checking for apptainer binary...
[2026-01-12 13:57:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:57:11] Running /usr/bin/apptainer --version
[2026-01-12 13:57:11] apptainer version 1.3.2-1.el7
[2026-01-12 13:57:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:57:12] c-205-18.aglt2.org
[2026-01-12 13:57:12] apptainer works
[2026-01-12 13:57:12] Set ATHENA_PROC_NUMBER=12
[2026-01-12 13:57:12] Set ATHENA_CORE_NUMBER=12
[2026-01-12 13:57:12] Starting ATLAS job with PandaID=6967473356
[2026-01-12 13:57:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 14:34:37]  *** The last 200 lines of the pilot log: ***
[2026-01-12 14:34:37]  replicas=None
[2026-01-12 14:34:37]  scope=mc16_13TeV
[2026-01-12 14:34:37]  status=None
[2026-01-12 14:34:37]  status_code=0
[2026-01-12 14:34:37]  storage_token=
[2026-01-12 14:34:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6967473356/log.47962010._003385.job.log.tgz.1
[2026-01-12 14:34:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/33/59/log.47962010._003385.job.log.tgz.1
[2026-01-12 14:34:37]  workdir=None
[2026-01-12 14:34:37] ]
[2026-01-12 14:34:37] 2026-01-12 19:33:22,993 | INFO     | transferring file log.47962010._003385.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967473356/log.47962010._003385.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 14:34:37] 2026-01-12 19:33:22,993 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967473356/log.47962010._003385.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003385.job
[2026-01-12 14:34:37] 2026-01-12 19:33:23,015 | INFO     | adding to output.list: log.47962010._003385.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/33/59/log.47962010._003385.job.log.tgz.
[2026-01-12 14:34:37] 2026-01-12 19:33:23,016 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 14:34:37] 2026-01-12 19:33:23,017 | INFO     | summary of transferred files:
[2026-01-12 14:34:37] 2026-01-12 19:33:23,017 | INFO     |  -- lfn=log.47962010._003385.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 14:34:37] 2026-01-12 19:33:23,017 | INFO     | stage-out finished correctly
[2026-01-12 14:34:37] 2026-01-12 19:33:24,395 | INFO     | monitor loop #168: job 0:6967473356 is in state 'finished'
[2026-01-12 14:34:37] 2026-01-12 19:33:24,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 14:34:37] 2026-01-12 19:33:24,811 | INFO     | time since job start (2155s) is within the limit (349056.0s)
[2026-01-12 14:34:37] 2026-01-12 19:33:25,869 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 14:34:37] 2026-01-12 19:33:26,009 | INFO     | PID=23579 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 14:34:37] 2026-01-12 19:33:26,898 | INFO     | monitor loop #169: job 0:6967473356 is in state 'finished'
[2026-01-12 14:34:37] 2026-01-12 19:33:26,898 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 14:34:37] 2026-01-12 19:33:27,009 | INFO     | time since job start (2158s) is within the limit (349056.0s)
[2026-01-12 14:34:37] 2026-01-12 19:33:28,822 | INFO     | job 6967473356 has state=finished
[2026-01-12 14:34:37] 2026-01-12 19:33:28,822 | INFO     | preparing for final server update for job 6967473356 in state='finished'
[2026-01-12 14:34:37] 2026-01-12 19:33:28,823 | INFO     | this job has now completed (state=finished)
[2026-01-12 14:34:37] 2026-01-12 19:33:28,823 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 14:34:37] 2026-01-12 19:33:28,823 | INFO     | log transfer has been attempted: DONE
[2026-01-12 14:34:37] 2026-01-12 19:33:28,823 | INFO     | job 6967473356 has finished - writing final server update
[2026-01-12 14:34:37] 2026-01-12 19:33:28,824 | INFO     | total number of processed events: 50 (read)
[2026-01-12 14:34:37] 2026-01-12 19:33:28,830 | INFO     | executing command: lscpu
[2026-01-12 14:34:37] 2026-01-12 19:33:28,855 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 14:34:37] 2026-01-12 19:33:29,015 | INFO     | time since job start (2160s) is within the limit (349056.0s)
[2026-01-12 14:34:37] 2026-01-12 19:33:29,402 | INFO     | monitor loop #170: job 0:6967473356 is in state 'finished'
[2026-01-12 14:34:37] 2026-01-12 19:33:29,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 14:34:37] 2026-01-12 19:33:31,021 | INFO     | time since job start (2162s) is within the limit (349056.0s)
[2026-01-12 14:34:37] 2026-01-12 19:33:31,905 | INFO     | monitor loop #171: job 0:6967473356 is in state 'finished'
[2026-01-12 14:34:37] 2026-01-12 19:33:31,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 14:34:37] 2026-01-12 19:33:33,026 | INFO     | time since job start (2164s) is within the limit (349056.0s)
[2026-01-12 14:34:37] 2026-01-12 19:33:33,924 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 14:34:37] 2026-01-12 19:33:33,928 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2026-01-12 14:34:37] 2026-01-12 19:33:33,930 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967473356/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 14:34:37] 2026-01-12 19:33:33,931 | INFO     | extracted standard info from prmon json
[2026-01-12 14:34:37] 2026-01-12 19:33:33,931 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 14:34:37] 2026-01-12 19:33:33,931 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 14:34:37] 2026-01-12 19:33:33,932 | INFO     | fitting pss+swap vs Time
[2026-01-12 14:34:37] 2026-01-12 19:33:33,932 | INFO     | sum of square deviations: 6797962.964285713
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | sum of deviations: -2375947901.464286
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | mean x: 1768245407.5357144
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | mean y: 2815964.964285714
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | intersect: 618020152537.7567
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | chi2: 0.43916663900568326
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | current memory leak: -349.51 B/s (using 28 data points, chi2=0.44)
[2026-01-12 14:34:37] 2026-01-12 19:33:33,933 | INFO     | could have reported an average CPU frequency of 1797 MHz (5 samples)
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | ..............................
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . Timing measurements:
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . get job = 0 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . initial setup = 2 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . payload setup = 7 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . stage-in = 0 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . payload execution = 2123 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,934 | INFO     | . stage-out = 0 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,935 | INFO     | . log creation = 0 s
[2026-01-12 14:34:37] 2026-01-12 19:33:33,935 | INFO     | ..............................
[2026-01-12 14:34:37] 2026-01-12 19:33:34,017 | INFO     | 
[2026-01-12 14:34:37] 2026-01-12 19:33:34,017 | INFO     | job summary report
[2026-01-12 14:34:37] 2026-01-12 19:33:34,018 | INFO     | --------------------------------------------------
[2026-01-12 14:34:37] 2026-01-12 19:33:34,018 | INFO     | PanDA job id: 6967473356
[2026-01-12 14:34:37] 2026-01-12 19:33:34,018 | INFO     | task id: 47962010
[2026-01-12 14:34:37] 2026-01-12 19:33:34,018 | INFO     | errors: (none)
[2026-01-12 14:34:37] 2026-01-12 19:33:34,018 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | pilot state: finished 
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | transexitcode: 0
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | exeerrorcode: 0
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | exeerrordiag: 
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | exitcode: 0
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | exitmsg: OK
[2026-01-12 14:34:37] 2026-01-12 19:33:34,019 | INFO     | cpuconsumptiontime: 18731 s
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | nevents: 50
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | neventsw: 0
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | pid: 29955
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | pgrp: 29955
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | corecount: 12
[2026-01-12 14:34:37] 2026-01-12 19:33:34,020 | INFO     | event service: False
[2026-01-12 14:34:37] 2026-01-12 19:33:34,021 | INFO     | sizes: {0: 2284567, 5: 2284829, 11: 2284885, 2135: 2310723, 2137: 2319745, 2140: 2319801, 2148: 2320207}
[2026-01-12 14:34:37] 2026-01-12 19:33:34,021 | INFO     | --------------------------------------------------
[2026-01-12 14:34:37] 2026-01-12 19:33:34,021 | INFO     | 
[2026-01-12 14:34:37] 2026-01-12 19:33:34,021 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 14:34:37] 2026-01-12 19:33:34,043 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,043 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,043 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,043 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,043 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,044 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,045 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,046 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 14:34:37] 2026-01-12 19:33:34,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,046 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 14:34:37] 2026-01-12 19:33:34,046 | INFO     | job 6967473356 has completed (purged errors)
[2026-01-12 14:34:37] 2026-01-12 19:33:34,046 | INFO     | overall cleanup function is called
[2026-01-12 14:34:37] 2026-01-12 19:33:35,061 | INFO     | --- collectZombieJob: --- 10, [29955]
[2026-01-12 14:34:37] 2026-01-12 19:33:35,061 | INFO     | zombie collector waiting for pid 29955
[2026-01-12 14:34:37] 2026-01-12 19:33:35,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 14:34:37] 2026-01-12 19:33:35,062 | INFO     | collected zombie processes
[2026-01-12 14:34:37] 2026-01-12 19:33:35,062 | INFO     | will attempt to kill all subprocesses of pid=29955
[2026-01-12 14:34:37] 2026-01-12 19:33:35,152 | INFO     | process IDs to be killed: [29955] (in reverse order)
[2026-01-12 14:34:37] 2026-01-12 19:33:35,201 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 14:34:37] 2026-01-12 19:33:35,201 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 14:34:37] 2026-01-12 19:33:35,205 | INFO     | did not find any defunct processes belonging to 29955
[2026-01-12 14:34:37] 2026-01-12 19:33:35,209 | INFO     | did not find any defunct processes belonging to 29955
[2026-01-12 14:34:37] 2026-01-12 19:33:35,209 | INFO     | ready for new job
[2026-01-12 14:34:37] 2026-01-12 19:33:35,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 14:34:37] 2026-01-12 19:33:35,210 | INFO     | ***************************************
[2026-01-12 14:34:37] 2026-01-12 19:33:35,210 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 14:34:37] 2026-01-12 19:33:35,210 | INFO     | ***************************************
[2026-01-12 14:34:37] 2026-01-12 19:33:35,210 | INFO     | 
[2026-01-12 14:34:37] 2026-01-12 19:33:35,211 | INFO     | architecture information:
[2026-01-12 14:34:37] 2026-01-12 19:33:35,212 | INFO     | executing command: cat /etc/os-release
[2026-01-12 14:34:37] 2026-01-12 19:33:35,226 | INFO     | cat /etc/os-release:
[2026-01-12 14:34:37] NAME="CentOS Linux"
[2026-01-12 14:34:37] VERSION="7 (Core)"
[2026-01-12 14:34:37] ID="centos"
[2026-01-12 14:34:37] ID_LIKE="rhel fedora"
[2026-01-12 14:34:37] VERSION_ID="7"
[2026-01-12 14:34:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 14:34:37] ANSI_COLOR="0;31"
[2026-01-12 14:34:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 14:34:37] HOME_URL="https://www.centos.org/"
[2026-01-12 14:34:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 14:34:37] 
[2026-01-12 14:34:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 14:34:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 14:34:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 14:34:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 14:34:37] 
[2026-01-12 14:34:37] 2026-01-12 19:33:35,226 | INFO     | ***************************************
[2026-01-12 14:34:37] 2026-01-12 19:33:35,729 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 14:34:37] 2026-01-12 19:33:35,745 | INFO     | sufficient remaining disk space (29145169920 B)
[2026-01-12 14:34:37] 2026-01-12 19:33:35,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 14:34:37] 2026-01-12 19:33:35,746 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 14:34:37] 2026-01-12 19:33:35,746 | INFO     | update_server=False
[2026-01-12 14:34:37] 2026-01-12 19:33:35,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 14:34:37] 2026-01-12 19:33:35,747 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 14:34:37] 2026-01-12 19:33:35,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 14:34:37] 2026-01-12 19:33:35,747 | INFO     | aborting loop
[2026-01-12 14:34:37] 2026-01-12 19:33:36,043 | INFO     | all data control threads have been joined
[2026-01-12 14:34:37] 2026-01-12 19:33:36,059 | INFO     | all payload control threads have been joined
[2026-01-12 14:34:37] 2026-01-12 19:33:36,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 14:34:37] 2026-01-12 19:33:36,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 14:34:37] 2026-01-12 19:33:36,752 | INFO     | [job] retrieve thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:36,753 | INFO     | [job] job monitor thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:36,753 | INFO     | [job] queue monitor thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:36,771 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:36,915 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:36,972 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:37,049 | INFO     | [data] control thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:37,067 | INFO     | [payload] control thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:37,082 | INFO     | [payload] failed_post thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:37,174 | INFO     | all job control threads have been joined
[2026-01-12 14:34:37] 2026-01-12 19:33:37,539 | INFO     | [data] copytool_in thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:37,903 | INFO     | [payload] validate_post thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:38,027 | INFO     | [job] validate thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:38,120 | INFO     | [data] copytool_out thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:38,180 | INFO     | [job] control thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:40,465 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:33:46,384 | INFO     | job.realtimelogging is not enabled
[2026-01-12 14:34:37] 2026-01-12 19:33:47,385 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 14:34:37] 2026-01-12 19:34:06,231 | INFO     | PID=23579 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 14:34:37] 2026-01-12 19:34:06,231 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 14:34:37] 2026-01-12 19:34:06,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 14:34:37] 2026-01-12 19:34:06,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 14:34:37] 2026-01-12 19:34:31,994 | INFO     | [monitor] cgroup control has ended
[2026-01-12 14:34:37] 2026-01-12 19:34:32,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139934107502400)>', '<ExcThread(monitor, started 139932920182528)>']
[2026-01-12 14:34:37] 2026-01-12 19:34:32,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 14:34:37] 2026-01-12 19:34:32,364 | INFO     | [monitor] control thread has ended
[2026-01-12 14:34:37] 2026-01-12 19:34:37,254 | INFO     | all workflow threads have been joined
[2026-01-12 14:34:37] 2026-01-12 19:34:37,254 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 14:34:37] 2026-01-12 19:34:37,259 | INFO     | traces error code: 0
[2026-01-12 14:34:37] 2026-01-12 19:34:37,259 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 14:34:37] 2026-01-12 19:34:37,360 [wrapper] ==== pilot stdout END ====
[2026-01-12 14:34:37] 2026-01-12 19:34:37,364 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 14:34:37] 2026-01-12 19:34:37,368 [wrapper] pilotpid: 23579
[2026-01-12 14:34:37] 2026-01-12 19:34:37,371 [wrapper] Pilot exit status: 0
[2026-01-12 14:34:37] 2026-01-12 19:34:37,385 [wrapper] pandaids: 6967473356
[2026-01-12 14:34:37] 2026-01-12 19:34:37,430 [wrapper] cleanup supervisor_pilot 11430 23580
[2026-01-12 14:34:37] 2026-01-12 19:34:37,434 [wrapper] Test setup, not cleaning
[2026-01-12 14:34:37] 2026-01-12 19:34:37,437 [wrapper] apfmon messages muted
[2026-01-12 14:34:37] 2026-01-12 19:34:37,441 [wrapper] ==== wrapper stdout END ====
[2026-01-12 14:34:37] 2026-01-12 19:34:37,444 [wrapper] ==== wrapper stderr END ====
[2026-01-12 14:34:37]  *** Error codes and diagnostics ***
[2026-01-12 14:34:37]     "exeErrorCode": 0,
[2026-01-12 14:34:37]     "exeErrorDiag": "",
[2026-01-12 14:34:37]     "pilotErrorCode": 0,
[2026-01-12 14:34:37]     "pilotErrorDiag": "",
[2026-01-12 14:34:37]  *** Listing of results directory ***
[2026-01-12 14:34:37] total 438396
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 13:01 pilot3.tar.gz
[2026-01-12 14:34:37] -rwx------ 1 boincer umatlas     36322 Jan 12 13:56 runpilot2-wrapper.sh
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 13:56 queuedata.json
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas       100 Jan 12 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 14:34:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 13:57 run_atlas
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas       105 Jan 12 13:57 job.xml
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas 393433002 Jan 12 13:57 EVNT.47962006._000050.pool.root.1
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 13:57 start_atlas.sh
[2026-01-12 14:34:37] drwxrwx--x 2 boincer umatlas      4096 Jan 12 13:57 shared
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas    592609 Jan 12 13:57 input.tar.gz
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas         0 Jan 12 13:57 boinc_lockfile
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas      2888 Jan 12 13:57 pandaJob.out
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas        57 Jan 12 13:57 setup.sh.local
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas    988539 Jan 12 13:57 agis_schedconf.cvmfs.json
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas   1516240 Jan 12 13:57 agis_ddmendpoints.agis.ALL.json
[2026-01-12 14:34:37] drwx------ 5 boincer umatlas      4096 Jan 12 13:57 pilot3
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas       529 Jan 12 14:24 boinc_task_state.xml
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas      5952 Jan 12 14:29 init_data.xml
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas  47690485 Jan 12 14:33 HITS.47962010._003385.pool.root.1
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas      1049 Jan 12 14:33 memory_monitor_summary.json
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas   1587907 Jan 12 14:33 log.47962010._003385.job.log.tgz.1
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas      8613 Jan 12 14:33 heartbeat.json
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas        95 Jan 12 14:34 pilot_heartbeat.json
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 14:34 boinc_mmap_file
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas        27 Jan 12 14:34 wrapper_checkpoint.txt
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas      4818 Jan 12 14:34 pilotlog.txt
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas    352850 Jan 12 14:34 log.47962010._003385.job.log.1
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas       353 Jan 12 14:34 output.list
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas       620 Jan 12 14:34 runtime_log
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas   1955840 Jan 12 14:34 result.tar.gz
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas       659 Jan 12 14:34 wpkKDmVGcz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCnnKDmdCMT4m.diag
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 14:34 runtime_log.err
[2026-01-12 14:34:37] -rw-r--r-- 1 boincer umatlas     22030 Jan 12 14:34 stderr.txt
[2026-01-12 14:34:37] HITS file was successfully produced:
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas 47690485 Jan 12 14:33 shared/HITS.pool.root.1
[2026-01-12 14:34:37]  *** Contents of shared directory: ***
[2026-01-12 14:34:37] total 433296
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas 393433002 Jan 12 13:57 ATLAS.root_0
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 13:57 start_atlas.sh
[2026-01-12 14:34:37] -rw-r--r-- 2 boincer umatlas    592609 Jan 12 13:57 input.tar.gz
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas  47690485 Jan 12 14:33 HITS.pool.root.1
[2026-01-12 14:34:37] -rw------- 1 boincer umatlas   1955840 Jan 12 14:34 result.tar.gz
14:34:38 (19523): run_atlas exited; CPU time 18351.531535
14:34:38 (19523): called boinc_finish(0)

</stderr_txt>
]]>

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