Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:02:04 (1966631): wrapper (7.7.26015): starting
18:02:04 (1966631): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 18:02:04] Arguments: --nthreads 8
[2026-01-12 18:02:04] Threads: 8
[2026-01-12 18:02:04] Checking for CVMFS
[2026-01-12 18:02:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 18:02:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 18:02:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 18:02:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 18:02:05] 2.13.3.0 11250 98364 350380 155068 2 432 23914559 32935937 17526 16776704 0 287825449 99.474 399448156 40046 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 18:02:05] CVMFS is ok
[2026-01-12 18:02:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 18:02:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 18:02:05] Further information can be found at the LHC@home message board.
[2026-01-12 18:02:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 18:02:05] Checking for apptainer binary...
[2026-01-12 18:02:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 18:02:05] Running /usr/bin/apptainer --version
[2026-01-12 18:02:05] apptainer version 1.4.5-2.el9
[2026-01-12 18:02:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 18:02:05] c6-2-29-1.aglt2.org
[2026-01-12 18:02:05] apptainer works
[2026-01-12 18:02:05] Set ATHENA_PROC_NUMBER=8
[2026-01-12 18:02:05] Set ATHENA_CORE_NUMBER=8
[2026-01-12 18:02:06] Starting ATLAS job with PandaID=6967473355
[2026-01-12 18:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 19:11:34]  *** The last 200 lines of the pilot log: ***
[2026-01-12 19:11:34]  mtime=0
[2026-01-12 19:11:34]  protocol_id=None
[2026-01-12 19:11:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 19:11:34]  replicas=None
[2026-01-12 19:11:34]  scope=mc16_13TeV
[2026-01-12 19:11:34]  status=None
[2026-01-12 19:11:34]  status_code=0
[2026-01-12 19:11:34]  storage_token=
[2026-01-12 19:11:34]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6967473355/log.47962010._003384.job.log.tgz.1
[2026-01-12 19:11:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/32/28/log.47962010._003384.job.log.tgz.1
[2026-01-12 19:11:34]  workdir=None
[2026-01-12 19:11:34] ]
[2026-01-12 19:11:34] 2026-01-13 00:10:26,323 | INFO     | transferring file log.47962010._003384.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6967473355/log.47962010._003384.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 19:11:34] 2026-01-13 00:10:26,324 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6967473355/log.47962010._003384.job.log.tgz.1 /tmp/boinchome/slots/2/log.47962010._003384.job
[2026-01-12 19:11:34] 2026-01-13 00:10:26,356 | INFO     | adding to output.list: log.47962010._003384.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/32/28/log.47962010._003384.job.log.tgz.
[2026-01-12 19:11:34] 2026-01-13 00:10:26,357 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 19:11:34] 2026-01-13 00:10:26,358 | INFO     | summary of transferred files:
[2026-01-12 19:11:34] 2026-01-13 00:10:26,358 | INFO     |  -- lfn=log.47962010._003384.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 19:11:34] 2026-01-13 00:10:26,358 | INFO     | stage-out finished correctly
[2026-01-12 19:11:34] 2026-01-13 00:10:27,298 | INFO     | time since job start (4085s) is within the limit (349056.0s)
[2026-01-12 19:11:34] 2026-01-13 00:10:27,652 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 19:11:34] 2026-01-13 00:10:27,731 | INFO     | job 6967473355 has state=finished
[2026-01-12 19:11:34] 2026-01-13 00:10:27,732 | INFO     | preparing for final server update for job 6967473355 in state='finished'
[2026-01-12 19:11:34] 2026-01-13 00:10:27,732 | INFO     | this job has now completed (state=finished)
[2026-01-12 19:11:34] 2026-01-13 00:10:27,732 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 19:11:34] 2026-01-13 00:10:27,732 | INFO     | log transfer has been attempted: DONE
[2026-01-12 19:11:34] 2026-01-13 00:10:27,733 | INFO     | job 6967473355 has finished - writing final server update
[2026-01-12 19:11:34] 2026-01-13 00:10:27,733 | INFO     | total number of processed events: 50 (read)
[2026-01-12 19:11:34] 2026-01-13 00:10:27,734 | INFO     | executing command: lscpu
[2026-01-12 19:11:34] 2026-01-13 00:10:27,778 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 19:11:34] 2026-01-13 00:10:28,815 | WARNING  | process 1976695 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 19:11:34] 2026-01-13 00:10:28,816 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6967473355/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:11:34] 2026-01-13 00:10:29,146 | INFO     | number of running child processes to parent process 1976695: 1
[2026-01-12 19:11:34] 2026-01-13 00:10:29,146 | INFO     | maximum number of monitored processes: 16
[2026-01-12 19:11:34] 2026-01-13 00:10:29,305 | INFO     | time since job start (4087s) is within the limit (349056.0s)
[2026-01-12 19:11:34] 2026-01-13 00:10:30,720 | INFO     | PID=1970312 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-12 19:11:34] 2026-01-13 00:10:30,720 | INFO     | .. there are 17 such processes running
[2026-01-12 19:11:34] 2026-01-13 00:10:31,651 | INFO     | monitor loop #270: job 0:6967473355 is in state 'finished'
[2026-01-12 19:11:34] 2026-01-13 00:10:31,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 19:11:34] 2026-01-13 00:10:31,721 | INFO     | time since job start (4089s) is within the limit (349056.0s)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,466 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-12 19:11:34] 2026-01-13 00:10:33,469 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3013.1667857142857
[2026-01-12 19:11:34] 2026-01-13 00:10:33,479 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6967473355/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,479 | INFO     | extracted standard info from prmon json
[2026-01-12 19:11:34] 2026-01-13 00:10:33,480 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 19:11:34] 2026-01-13 00:10:33,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | fitting pss+swap vs Time
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | sum of square deviations: 66878312.98333337
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | sum of deviations: -3118550380.1500006
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | mean x: 1768261086.5166667
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | mean y: 2518959.65
[2026-01-12 19:11:34] 2026-01-13 00:10:33,482 | INFO     | intersect: 82456920656.8824
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | chi2: 0.5213013317233939
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | current memory leak: -46.63 B/s (using 60 data points, chi2=0.52)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | could have reported an average CPU frequency of 3043 MHz (6 samples)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | ..............................
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | . Timing measurements:
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | . get job = 0 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,483 | INFO     | . initial setup = 3 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | . payload setup = 10 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | . stage-in = 0 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | . payload execution = 4050 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | . stage-out = 0 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | . log creation = 0 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,484 | INFO     | ..............................
[2026-01-12 19:11:34] 2026-01-13 00:10:33,582 | INFO     | 
[2026-01-12 19:11:34] 2026-01-13 00:10:33,582 | INFO     | job summary report
[2026-01-12 19:11:34] 2026-01-13 00:10:33,582 | INFO     | --------------------------------------------------
[2026-01-12 19:11:34] 2026-01-13 00:10:33,582 | INFO     | PanDA job id: 6967473355
[2026-01-12 19:11:34] 2026-01-13 00:10:33,582 | INFO     | task id: 47962010
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | errors: (none)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | pilot state: finished 
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | transexitcode: 0
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | exeerrorcode: 0
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | exeerrordiag: 
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | exitcode: 0
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | exitmsg: OK
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | cpuconsumptiontime: 14512 s
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | nevents: 50
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | neventsw: 0
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | pid: 1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | pgrp: 1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | corecount: 8
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | event service: False
[2026-01-12 19:11:34] 2026-01-13 00:10:33,583 | INFO     | sizes: {0: 2284567, 7: 2284829, 11: 2284857, 4065: 2311437, 4066: 2320431, 4068: 2320487, 4073: 2320861}
[2026-01-12 19:11:34] 2026-01-13 00:10:33,584 | INFO     | --------------------------------------------------
[2026-01-12 19:11:34] 2026-01-13 00:10:33,584 | INFO     | 
[2026-01-12 19:11:34] 2026-01-13 00:10:33,584 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-12 19:11:34] 2026-01-13 00:10:33,604 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | job 6967473355 has completed (purged errors)
[2026-01-12 19:11:34] 2026-01-13 00:10:33,606 | INFO     | overall cleanup function is called
[2026-01-12 19:11:34] 2026-01-13 00:10:34,620 | INFO     | --- collectZombieJob: --- 10, [1976695]
[2026-01-12 19:11:34] 2026-01-13 00:10:34,620 | INFO     | zombie collector waiting for pid 1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:34,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 19:11:34] 2026-01-13 00:10:34,620 | INFO     | collected zombie processes
[2026-01-12 19:11:34] 2026-01-13 00:10:34,620 | INFO     | will attempt to kill all subprocesses of pid=1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:34,959 | INFO     | process IDs to be killed: [1976695] (in reverse order)
[2026-01-12 19:11:34] 2026-01-13 00:10:35,068 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 19:11:34] 2026-01-13 00:10:35,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 19:11:34] 2026-01-13 00:10:35,081 | INFO     | did not find any defunct processes belonging to 1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:35,100 | INFO     | did not find any defunct processes belonging to 1976695
[2026-01-12 19:11:34] 2026-01-13 00:10:35,100 | INFO     | ready for new job
[2026-01-12 19:11:34] 2026-01-13 00:10:35,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 19:11:34] 2026-01-13 00:10:35,101 | INFO     | ***************************************
[2026-01-12 19:11:34] 2026-01-13 00:10:35,102 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 19:11:34] 2026-01-13 00:10:35,102 | INFO     | ***************************************
[2026-01-12 19:11:34] 2026-01-13 00:10:35,102 | INFO     | 
[2026-01-12 19:11:34] 2026-01-13 00:10:35,105 | INFO     | architecture information:
[2026-01-12 19:11:34] 2026-01-13 00:10:35,105 | INFO     | executing command: cat /etc/os-release
[2026-01-12 19:11:34] 2026-01-13 00:10:35,128 | INFO     | cat /etc/os-release:
[2026-01-12 19:11:34] NAME="CentOS Linux"
[2026-01-12 19:11:34] VERSION="7 (Core)"
[2026-01-12 19:11:34] ID="centos"
[2026-01-12 19:11:34] ID_LIKE="rhel fedora"
[2026-01-12 19:11:34] VERSION_ID="7"
[2026-01-12 19:11:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 19:11:34] ANSI_COLOR="0;31"
[2026-01-12 19:11:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 19:11:34] HOME_URL="https://www.centos.org/"
[2026-01-12 19:11:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 19:11:34] 
[2026-01-12 19:11:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 19:11:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 19:11:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 19:11:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 19:11:34] 
[2026-01-12 19:11:34] 2026-01-13 00:10:35,129 | INFO     | ***************************************
[2026-01-12 19:11:34] 2026-01-13 00:10:35,632 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-12 19:11:34] 2026-01-13 00:10:35,648 | INFO     | sufficient remaining disk space (73778855936 B)
[2026-01-12 19:11:34] 2026-01-13 00:10:35,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 19:11:34] 2026-01-13 00:10:35,650 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 19:11:34] 2026-01-13 00:10:35,650 | INFO     | update_server=False
[2026-01-12 19:11:34] 2026-01-13 00:10:35,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 19:11:34] 2026-01-13 00:10:35,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:11:34] 2026-01-13 00:10:35,651 | INFO     | aborting loop
[2026-01-12 19:11:34] 2026-01-13 00:10:35,888 | INFO     | all job control threads have been joined
[2026-01-12 19:11:34] 2026-01-13 00:10:36,545 | INFO     | all data control threads have been joined
[2026-01-12 19:11:34] 2026-01-13 00:10:36,656 | INFO     | [job] job monitor thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:36,657 | INFO     | [job] retrieve thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:36,740 | INFO     | all payload control threads have been joined
[2026-01-12 19:11:34] 2026-01-13 00:10:36,889 | INFO     | [payload] failed_post thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:36,893 | INFO     | [job] control thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:36,964 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:36,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 19:11:34] 2026-01-13 00:10:37,232 | INFO     | [payload] validate_post thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,270 | INFO     | [job] validate thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,424 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,552 | INFO     | [data] control thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,563 | INFO     | [data] copytool_in thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,746 | INFO     | [payload] control thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:37,785 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:38,045 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:38,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 19:11:34] 2026-01-13 00:10:38,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:11:34] 2026-01-13 00:10:38,982 | INFO     | [data] copytool_out thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:39,606 | INFO     | [job] queue monitor thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:10:42,307 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 19:11:34] 2026-01-13 00:11:05,269 | INFO     | PID=1970312 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 19:11:34] 2026-01-13 00:11:05,269 | INFO     | .. there are 17 such processes running
[2026-01-12 19:11:34] 2026-01-13 00:11:05,270 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 19:11:34] 2026-01-13 00:11:05,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 19:11:34] 2026-01-13 00:11:05,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 19:11:34] 2026-01-13 00:11:29,017 | INFO     | [monitor] cgroup control has ended
[2026-01-12 19:11:34] 2026-01-13 00:11:29,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140060870043456)>', '<ExcThread(monitor, started 140060527671040)>']
[2026-01-12 19:11:34] 2026-01-13 00:11:30,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 19:11:34] 2026-01-13 00:11:30,440 | INFO     | [monitor] control thread has ended
[2026-01-12 19:11:34] 2026-01-13 00:11:34,510 | INFO     | all workflow threads have been joined
[2026-01-12 19:11:34] 2026-01-13 00:11:34,510 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 19:11:34] 2026-01-13 00:11:34,510 | INFO     | traces error code: 0
[2026-01-12 19:11:34] 2026-01-13 00:11:34,511 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 19:11:34] 2026-01-13 00:11:34,661 [wrapper] ==== pilot stdout END ====
[2026-01-12 19:11:34] 2026-01-13 00:11:34,664 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 19:11:34] 2026-01-13 00:11:34,666 [wrapper] pilotpid: 1970312
[2026-01-12 19:11:34] 2026-01-13 00:11:34,668 [wrapper] Pilot exit status: 0
[2026-01-12 19:11:34] 2026-01-13 00:11:34,685 [wrapper] pandaids: 6967473355
[2026-01-12 19:11:34] 2026-01-13 00:11:34,811 [wrapper] cleanup supervisor_pilot 2164416 1970313
[2026-01-12 19:11:34] 2026-01-13 00:11:34,830 [wrapper] Test setup, not cleaning
[2026-01-12 19:11:34] 2026-01-13 00:11:34,838 [wrapper] apfmon messages muted
[2026-01-12 19:11:34] 2026-01-13 00:11:34,840 [wrapper] ==== wrapper stdout END ====
[2026-01-12 19:11:34] 2026-01-13 00:11:34,843 [wrapper] ==== wrapper stderr END ====
[2026-01-12 19:11:34]  *** Error codes and diagnostics ***
[2026-01-12 19:11:34]     "exeErrorCode": 0,
[2026-01-12 19:11:34]     "exeErrorDiag": "",
[2026-01-12 19:11:34]     "pilotErrorCode": 0,
[2026-01-12 19:11:34]     "pilotErrorDiag": "",
[2026-01-12 19:11:34]  *** Listing of results directory ***
[2026-01-12 19:11:34] total 435492
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 13:01 pilot3.tar.gz
[2026-01-12 19:11:34] -rwx------. 1 boincer umatlas     36322 Jan 12 13:56 runpilot2-wrapper.sh
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 13:56 queuedata.json
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas       100 Jan 12 18:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 19:11:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 18:02 run_atlas
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas       105 Jan 12 18:02 job.xml
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas 393433002 Jan 12 18:02 EVNT.47962006._000050.pool.root.1
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 18:02 start_atlas.sh
[2026-01-12 19:11:34] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 18:02 shared
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas    592614 Jan 12 18:02 input.tar.gz
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas         0 Jan 12 18:02 boinc_lockfile
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas      2888 Jan 12 18:02 pandaJob.out
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas        57 Jan 12 18:02 setup.sh.local
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas    988531 Jan 12 18:02 agis_schedconf.cvmfs.json
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas   1516240 Jan 12 18:02 agis_ddmendpoints.agis.ALL.json
[2026-01-12 19:11:34] drwx------. 5 boincer umatlas      4096 Jan 12 18:02 pilot3
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas      6841 Jan 12 19:01 init_data.xml
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas       530 Jan 12 19:01 boinc_task_state.xml
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas  45048718 Jan 12 19:10 HITS.47962010._003384.pool.root.1
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas      1038 Jan 12 19:10 memory_monitor_summary.json
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas   1182583 Jan 12 19:10 log.47962010._003384.job.log.tgz.1
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas      8574 Jan 12 19:10 heartbeat.json
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas        95 Jan 12 19:11 pilot_heartbeat.json
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 19:11 boinc_mmap_file
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas        27 Jan 12 19:11 wrapper_checkpoint.txt
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas      4824 Jan 12 19:11 pilotlog.txt
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas    587838 Jan 12 19:11 log.47962010._003384.job.log.1
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas       353 Jan 12 19:11 output.list
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas       620 Jan 12 19:11 runtime_log
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas   1792000 Jan 12 19:11 result.tar.gz
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas      9347 Jan 12 19:11 runtime_log.err
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas       654 Jan 12 19:11 RQjKDmVGcz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBnnKDmay0fmm.diag
[2026-01-12 19:11:34] -rw-r--r--. 1 boincer umatlas     21901 Jan 12 19:11 stderr.txt
[2026-01-12 19:11:34] HITS file was successfully produced:
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas 45048718 Jan 12 19:10 shared/HITS.pool.root.1
[2026-01-12 19:11:34]  *** Contents of shared directory: ***
[2026-01-12 19:11:34] total 430560
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas 393433002 Jan 12 18:02 ATLAS.root_0
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 18:02 start_atlas.sh
[2026-01-12 19:11:34] -rw-r--r--. 2 boincer umatlas    592614 Jan 12 18:02 input.tar.gz
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas  45048718 Jan 12 19:10 HITS.pool.root.1
[2026-01-12 19:11:34] -rw-------. 1 boincer umatlas   1792000 Jan 12 19:11 result.tar.gz
19:11:36 (1966631): run_atlas exited; CPU time 14559.734088
19:11:36 (1966631): called boinc_finish(0)

</stderr_txt>
]]>

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