Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:10:09 (19803): wrapper (7.7.26015): starting
13:10:09 (19803): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 13:10:09] Arguments: --nthreads 12
[2026-01-12 13:10:09] Threads: 12
[2026-01-12 13:10:09] Checking for CVMFS
[2026-01-12 13:10:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:10:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:10:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:10:09] 2.11.2.0 2947 355657 97624 155061 1 69 18614683 20275200 1 130560 1 150424179 99.953 20964479 14939 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 13:10:09] CVMFS is ok
[2026-01-12 13:10:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 13:10:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 13:10:10] Further information can be found at the LHC@home message board.
[2026-01-12 13:10:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:10:10] Checking for apptainer binary...
[2026-01-12 13:10:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:10:10] Running /usr/bin/apptainer --version
[2026-01-12 13:10:10] apptainer version 1.3.2-1.el7
[2026-01-12 13:10:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:10:11] c-205-18.aglt2.org
[2026-01-12 13:10:11] apptainer works
[2026-01-12 13:10:11] Set ATHENA_PROC_NUMBER=12
[2026-01-12 13:10:11] Set ATHENA_CORE_NUMBER=12
[2026-01-12 13:10:11] Starting ATLAS job with PandaID=6967339964
[2026-01-12 13:10:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 13:44:35]  *** The last 200 lines of the pilot log: ***
[2026-01-12 13:44:35]  workdir=None
[2026-01-12 13:44:35] ]
[2026-01-12 13:44:35] 2026-01-12 18:43:35,452 | INFO     | transferring file log.47962010._003265.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/log.47962010._003265.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 13:44:35] 2026-01-12 18:43:35,452 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/log.47962010._003265.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003265.job
[2026-01-12 13:44:35] 2026-01-12 18:43:35,473 | INFO     | adding to output.list: log.47962010._003265.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/ca/6d/log.47962010._003265.job.log.tgz.
[2026-01-12 13:44:35] 2026-01-12 18:43:35,474 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 13:44:35] 2026-01-12 18:43:35,474 | INFO     | summary of transferred files:
[2026-01-12 13:44:35] 2026-01-12 18:43:35,474 | INFO     |  -- lfn=log.47962010._003265.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 13:44:35] 2026-01-12 18:43:35,474 | INFO     | stage-out finished correctly
[2026-01-12 13:44:35] 2026-01-12 18:43:36,765 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 13:44:35] 2026-01-12 18:43:36,876 | INFO     | time since job start (1989s) is within the limit (349056.0s)
[2026-01-12 13:44:35] 2026-01-12 18:43:37,583 | INFO     | job 6967339964 has state=finished
[2026-01-12 13:44:35] 2026-01-12 18:43:37,583 | INFO     | preparing for final server update for job 6967339964 in state='finished'
[2026-01-12 13:44:35] 2026-01-12 18:43:37,584 | INFO     | this job has now completed (state=finished)
[2026-01-12 13:44:35] 2026-01-12 18:43:37,584 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 13:44:35] 2026-01-12 18:43:37,584 | INFO     | log transfer has been attempted: DONE
[2026-01-12 13:44:35] 2026-01-12 18:43:37,585 | INFO     | job 6967339964 has finished - writing final server update
[2026-01-12 13:44:35] 2026-01-12 18:43:37,585 | INFO     | total number of processed events: 50 (read)
[2026-01-12 13:44:35] 2026-01-12 18:43:37,592 | INFO     | executing command: lscpu
[2026-01-12 13:44:35] 2026-01-12 18:43:37,617 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 13:44:35] 2026-01-12 18:43:38,881 | INFO     | time since job start (1991s) is within the limit (349056.0s)
[2026-01-12 13:44:35] 2026-01-12 18:43:40,887 | INFO     | time since job start (1993s) is within the limit (349056.0s)
[2026-01-12 13:44:35] 2026-01-12 18:43:41,538 | WARNING  | process 29861 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 13:44:35] 2026-01-12 18:43:41,538 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:44:35] 2026-01-12 18:43:41,539 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:44:35] 2026-01-12 18:43:41,540 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-12 13:44:35] 2026-01-12 18:43:41,540 | WARNING  | maxPSS not found in memory monitor output
[2026-01-12 13:44:35] 2026-01-12 18:43:41,540 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4234171 B
[2026-01-12 13:44:35] 2026-01-12 18:43:41,541 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 173049 B
[2026-01-12 13:44:35] 2026-01-12 18:43:41,541 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13751 B
[2026-01-12 13:44:35] 2026-01-12 18:43:41,541 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,424 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 13:44:35] 2026-01-12 18:43:42,432 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1651.4166666666667
[2026-01-12 13:44:35] 2026-01-12 18:43:42,435 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,435 | INFO     | extracted standard info from prmon json
[2026-01-12 13:44:35] 2026-01-12 18:43:42,436 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 13:44:35] 2026-01-12 18:43:42,436 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | fitting pss+swap vs Time
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | sum of square deviations: 5441904.15384615
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | sum of deviations: -1165621593.923077
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | mean x: 1768242524.6153846
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | mean y: 2812538.3076923075
[2026-01-12 13:44:35] 2026-01-12 18:43:42,438 | INFO     | intersect: 378749224036.2086
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | chi2: 0.37933263796046335
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | current memory leak: -214.19 B/s (using 26 data points, chi2=0.38)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | could have reported an average CPU frequency of 1749 MHz (5 samples)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | ..............................
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | . Timing measurements:
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | . get job = 0 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,439 | INFO     | . initial setup = 2 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | . payload setup = 8 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | . stage-in = 0 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | . payload execution = 1959 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | . stage-out = 0 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | . log creation = 0 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,440 | INFO     | ..............................
[2026-01-12 13:44:35] 2026-01-12 18:43:42,441 | INFO     | sufficient remaining disk space (29138878464 B)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,457 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | 
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | job summary report
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | --------------------------------------------------
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | PanDA job id: 6967339964
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | task id: 47962010
[2026-01-12 13:44:35] 2026-01-12 18:43:42,525 | INFO     | errors: (none)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | pilot state: finished 
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | transexitcode: 0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | exeerrorcode: 0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | exeerrordiag: 
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | exitcode: 0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,526 | INFO     | exitmsg: OK
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | cpuconsumptiontime: 17481 s
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | nevents: 50
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | neventsw: 0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | pid: 29861
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | pgrp: 29861
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | corecount: 12
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | event service: False
[2026-01-12 13:44:35] 2026-01-12 18:43:42,527 | INFO     | sizes: {0: 2284398, 1: 2284597, 6: 2284859, 11: 2284887, 1972: 2310605, 1973: 2319599, 1974: 2319783, 1980: 2320061}
[2026-01-12 13:44:35] 2026-01-12 18:43:42,528 | INFO     | --------------------------------------------------
[2026-01-12 13:44:35] 2026-01-12 18:43:42,528 | INFO     | 
[2026-01-12 13:44:35] 2026-01-12 18:43:42,528 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 13:44:35] 2026-01-12 18:43:42,534 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6967339964: 9140616 B (within 4404019200 B limit)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,534 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6967339964/HITS.47962010._003265.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,535 | INFO     | total size of present files: 0 B (workdir size: 9140616 B)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,535 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6967339964/HITS.47962010._003265.pool.root.1 since it does not exist
[2026-01-12 13:44:35] 2026-01-12 18:43:42,548 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,548 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,549 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,549 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,549 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,549 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,550 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,551 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,552 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 13:44:35] 2026-01-12 18:43:42,552 | INFO     | job 6967339964 has completed (purged errors)
[2026-01-12 13:44:35] 2026-01-12 18:43:42,552 | INFO     | overall cleanup function is called
[2026-01-12 13:44:35] 2026-01-12 18:43:42,634 | INFO     | number of running child processes to parent process 29861: 1
[2026-01-12 13:44:35] 2026-01-12 18:43:42,635 | INFO     | maximum number of monitored processes: 17
[2026-01-12 13:44:35] 2026-01-12 18:43:42,635 | INFO     | aborting job monitoring since job object (job id=6967339964) has expired
[2026-01-12 13:44:35] 2026-01-12 18:43:43,575 | INFO     | --- collectZombieJob: --- 10, [29861]
[2026-01-12 13:44:35] 2026-01-12 18:43:43,575 | INFO     | zombie collector waiting for pid 29861
[2026-01-12 13:44:35] 2026-01-12 18:43:43,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 13:44:35] 2026-01-12 18:43:43,576 | INFO     | collected zombie processes
[2026-01-12 13:44:35] 2026-01-12 18:43:43,576 | INFO     | will attempt to kill all subprocesses of pid=29861
[2026-01-12 13:44:35] 2026-01-12 18:43:43,662 | INFO     | process IDs to be killed: [29861] (in reverse order)
[2026-01-12 13:44:35] 2026-01-12 18:43:43,713 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 13:44:35] 2026-01-12 18:43:43,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 13:44:35] 2026-01-12 18:43:43,717 | INFO     | did not find any defunct processes belonging to 29861
[2026-01-12 13:44:35] 2026-01-12 18:43:43,720 | INFO     | did not find any defunct processes belonging to 29861
[2026-01-12 13:44:35] 2026-01-12 18:43:43,720 | INFO     | ready for new job
[2026-01-12 13:44:35] 2026-01-12 18:43:43,720 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 13:44:35] 2026-01-12 18:43:43,722 | INFO     | ***************************************
[2026-01-12 13:44:35] 2026-01-12 18:43:43,722 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 13:44:35] 2026-01-12 18:43:43,722 | INFO     | ***************************************
[2026-01-12 13:44:35] 2026-01-12 18:43:43,722 | INFO     | 
[2026-01-12 13:44:35] 2026-01-12 18:43:43,723 | INFO     | architecture information:
[2026-01-12 13:44:35] 2026-01-12 18:43:43,723 | INFO     | executing command: cat /etc/os-release
[2026-01-12 13:44:35] 2026-01-12 18:43:43,739 | INFO     | cat /etc/os-release:
[2026-01-12 13:44:35] NAME="CentOS Linux"
[2026-01-12 13:44:35] VERSION="7 (Core)"
[2026-01-12 13:44:35] ID="centos"
[2026-01-12 13:44:35] ID_LIKE="rhel fedora"
[2026-01-12 13:44:35] VERSION_ID="7"
[2026-01-12 13:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 13:44:35] ANSI_COLOR="0;31"
[2026-01-12 13:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 13:44:35] HOME_URL="https://www.centos.org/"
[2026-01-12 13:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 13:44:35] 
[2026-01-12 13:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 13:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 13:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 13:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 13:44:35] 
[2026-01-12 13:44:35] 2026-01-12 18:43:43,739 | INFO     | ***************************************
[2026-01-12 13:44:35] 2026-01-12 18:43:44,242 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 13:44:35] 2026-01-12 18:43:44,258 | INFO     | sufficient remaining disk space (29149364224 B)
[2026-01-12 13:44:35] 2026-01-12 18:43:44,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 13:44:35] 2026-01-12 18:43:44,258 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 13:44:35] 2026-01-12 18:43:44,258 | INFO     | update_server=False
[2026-01-12 13:44:35] 2026-01-12 18:43:44,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 13:44:35] 2026-01-12 18:43:44,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 13:44:35] 2026-01-12 18:43:44,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:44:35] 2026-01-12 18:43:44,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:44:35] 2026-01-12 18:43:44,260 | INFO     | aborting loop
[2026-01-12 13:44:35] 2026-01-12 18:43:44,303 | INFO     | all data control threads have been joined
[2026-01-12 13:44:35] 2026-01-12 18:43:44,333 | INFO     | all payload control threads have been joined
[2026-01-12 13:44:35] 2026-01-12 18:43:45,201 | INFO     | all job control threads have been joined
[2026-01-12 13:44:35] 2026-01-12 18:43:45,261 | INFO     | [job] retrieve thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,265 | INFO     | [job] queue monitor thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,265 | INFO     | [job] job monitor thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,309 | INFO     | [data] control thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,339 | INFO     | [payload] control thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,359 | INFO     | [payload] validate_post thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:45,791 | INFO     | [job] validate thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,101 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,176 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,197 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,206 | INFO     | [job] control thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,234 | INFO     | [payload] failed_post thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,262 | INFO     | [data] copytool_out thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:46,692 | INFO     | [data] copytool_in thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:47,350 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 13:44:35] 2026-01-12 18:43:51,356 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:43:54,584 | INFO     | job.realtimelogging is not enabled
[2026-01-12 13:44:35] 2026-01-12 18:43:55,590 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 13:44:35] 2026-01-12 18:44:14,092 | INFO     | PID=23479 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 13:44:35] 2026-01-12 18:44:14,093 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 13:44:35] 2026-01-12 18:44:14,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 13:44:35] 2026-01-12 18:44:14,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 13:44:35] 2026-01-12 18:44:29,179 | INFO     | [monitor] cgroup control has ended
[2026-01-12 13:44:35] 2026-01-12 18:44:30,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140271489169216)>', '<ExcThread(monitor, started 140270637131520)>']
[2026-01-12 13:44:35] 2026-01-12 18:44:31,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 13:44:35] 2026-01-12 18:44:31,180 | INFO     | [monitor] control thread has ended
[2026-01-12 13:44:35] 2026-01-12 18:44:35,220 | INFO     | all workflow threads have been joined
[2026-01-12 13:44:35] 2026-01-12 18:44:35,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 13:44:35] 2026-01-12 18:44:35,220 | INFO     | traces error code: 0
[2026-01-12 13:44:35] 2026-01-12 18:44:35,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 13:44:35] 2026-01-12 18:44:35,323 [wrapper] ==== pilot stdout END ====
[2026-01-12 13:44:35] 2026-01-12 18:44:35,327 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 13:44:35] 2026-01-12 18:44:35,331 [wrapper] pilotpid: 23479
[2026-01-12 13:44:35] 2026-01-12 18:44:35,335 [wrapper] Pilot exit status: 0
[2026-01-12 13:44:35] 2026-01-12 18:44:35,350 [wrapper] pandaids: 6967339964
[2026-01-12 13:44:35] 2026-01-12 18:44:35,396 [wrapper] cleanup supervisor_pilot 11309 23480
[2026-01-12 13:44:35] 2026-01-12 18:44:35,400 [wrapper] Test setup, not cleaning
[2026-01-12 13:44:35] 2026-01-12 18:44:35,404 [wrapper] apfmon messages muted
[2026-01-12 13:44:35] 2026-01-12 18:44:35,408 [wrapper] ==== wrapper stdout END ====
[2026-01-12 13:44:35] 2026-01-12 18:44:35,412 [wrapper] ==== wrapper stderr END ====
[2026-01-12 13:44:35]  *** Error codes and diagnostics ***
[2026-01-12 13:44:35]     "exeErrorCode": 0,
[2026-01-12 13:44:35]     "exeErrorDiag": "",
[2026-01-12 13:44:35]     "pilotErrorCode": 0,
[2026-01-12 13:44:35]     "pilotErrorDiag": "",
[2026-01-12 13:44:35]  *** Listing of results directory ***
[2026-01-12 13:44:35] total 434384
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 12:19 queuedata.json
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 12:19 pilot3.tar.gz
[2026-01-12 13:44:35] -rwx------ 1 boincer umatlas     36322 Jan 12 12:23 runpilot2-wrapper.sh
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas       100 Jan 12 13:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 13:44:35] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 13:10 run_atlas
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas       105 Jan 12 13:10 job.xml
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas 393778295 Jan 12 13:10 EVNT.47962006._000109.pool.root.1
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 13:10 start_atlas.sh
[2026-01-12 13:44:35] drwxrwx--x 2 boincer umatlas      4096 Jan 12 13:10 shared
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas    592619 Jan 12 13:10 input.tar.gz
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas         0 Jan 12 13:10 boinc_lockfile
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas      2890 Jan 12 13:10 pandaJob.out
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas        57 Jan 12 13:10 setup.sh.local
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas    988539 Jan 12 13:10 agis_schedconf.cvmfs.json
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas   1516240 Jan 12 13:10 agis_ddmendpoints.agis.ALL.json
[2026-01-12 13:44:35] drwx------ 5 boincer umatlas      4096 Jan 12 13:10 pilot3
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas       530 Jan 12 13:36 boinc_task_state.xml
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas      5952 Jan 12 13:40 init_data.xml
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas  43282386 Jan 12 13:43 HITS.47962010._003265.pool.root.1
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas      1051 Jan 12 13:43 memory_monitor_summary.json
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas   1589144 Jan 12 13:43 log.47962010._003265.job.log.tgz.1
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas      8615 Jan 12 13:43 heartbeat.json
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas        95 Jan 12 13:44 pilot_heartbeat.json
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 13:44 boinc_mmap_file
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas        27 Jan 12 13:44 wrapper_checkpoint.txt
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas      4818 Jan 12 13:44 pilotlog.txt
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas    330575 Jan 12 13:44 log.47962010._003265.job.log.1
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas       353 Jan 12 13:44 output.list
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas       620 Jan 12 13:44 runtime_log
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas   1935360 Jan 12 13:44 result.tar.gz
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 13:44 runtime_log.err
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas       659 Jan 12 13:44 9brNDmLoaz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmilnKDmp9uGcn.diag
[2026-01-12 13:44:35] -rw-r--r-- 1 boincer umatlas     22683 Jan 12 13:44 stderr.txt
[2026-01-12 13:44:35] HITS file was successfully produced:
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas 43282386 Jan 12 13:43 shared/HITS.pool.root.1
[2026-01-12 13:44:35]  *** Contents of shared directory: ***
[2026-01-12 13:44:35] total 429308
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas 393778295 Jan 12 13:10 ATLAS.root_0
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 13:10 start_atlas.sh
[2026-01-12 13:44:35] -rw-r--r-- 2 boincer umatlas    592619 Jan 12 13:10 input.tar.gz
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas  43282386 Jan 12 13:43 HITS.pool.root.1
[2026-01-12 13:44:35] -rw------- 1 boincer umatlas   1935360 Jan 12 13:44 result.tar.gz
13:44:37 (19803): run_atlas exited; CPU time 17134.500995
13:44:37 (19803): called boinc_finish(0)

</stderr_txt>
]]>

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