Name oQPLDmslaz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJzhKDmgd1spm_2
Workunit 238461691
Created 12 Jan 2026, 17:56:36 UTC
Sent 12 Jan 2026, 17:56:41 UTC
Report deadline 20 Jan 2026, 17:56:41 UTC
Received 12 Jan 2026, 18:34:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 10832569
Run time 36 min 52 sec
CPU time 5 hours 24 min 56 sec
Validate state Valid
Credit 196.92
Device peak FLOPS 34.25 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.55 GB
Peak swap size 2.12 GB
Peak disk usage 856.68 MB

Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:57:12 (1702): wrapper (7.7.26015): starting
12:57:12 (1702): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 12:57:12] Arguments: --nthreads 12
[2026-01-12 12:57:12] Threads: 12
[2026-01-12 12:57:12] Checking for CVMFS
[2026-01-12 12:57:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 12:57:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 12:57:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 12:57:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 12:57:13] 2.11.2.0 2979 355704 89788 155061 2 69 18637177 20275200 1 130560 1 148704387 99.955 20674130 16273 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 12:57:13] CVMFS is ok
[2026-01-12 12:57:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 12:57:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 12:57:13] Further information can be found at the LHC@home message board.
[2026-01-12 12:57:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 12:57:13] Checking for apptainer binary...
[2026-01-12 12:57:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 12:57:13] Running /usr/bin/apptainer --version
[2026-01-12 12:57:13] apptainer version 1.3.2-1.el7
[2026-01-12 12:57:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 12:57:14] c-205-21.aglt2.org
[2026-01-12 12:57:14] apptainer works
[2026-01-12 12:57:14] Set ATHENA_PROC_NUMBER=12
[2026-01-12 12:57:14] Set ATHENA_CORE_NUMBER=12
[2026-01-12 12:57:14] Starting ATLAS job with PandaID=6967340008
[2026-01-12 12:57:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 13:34:01]  *** The last 200 lines of the pilot log: ***
[2026-01-12 13:34:01] 2026-01-12 18:33:22,689 | INFO     | transferring file log.47962010._003309.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/log.47962010._003309.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 13:34:01] 2026-01-12 18:33:22,690 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/log.47962010._003309.job.log.tgz.1 /tmp/boinchome/slots/0/log.47962010._003309.job
[2026-01-12 13:34:01] 2026-01-12 18:33:22,712 | INFO     | adding to output.list: log.47962010._003309.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3b/77/log.47962010._003309.job.log.tgz.
[2026-01-12 13:34:01] 2026-01-12 18:33:22,713 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 13:34:01] 2026-01-12 18:33:22,713 | INFO     | summary of transferred files:
[2026-01-12 13:34:01] 2026-01-12 18:33:22,713 | INFO     |  -- lfn=log.47962010._003309.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 13:34:01] 2026-01-12 18:33:22,713 | INFO     | stage-out finished correctly
[2026-01-12 13:34:01] 2026-01-12 18:33:23,682 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 13:34:01] 2026-01-12 18:33:23,761 | INFO     | job 6967340008 has state=finished
[2026-01-12 13:34:01] 2026-01-12 18:33:23,762 | INFO     | preparing for final server update for job 6967340008 in state='finished'
[2026-01-12 13:34:01] 2026-01-12 18:33:23,762 | INFO     | this job has now completed (state=finished)
[2026-01-12 13:34:01] 2026-01-12 18:33:23,762 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 13:34:01] 2026-01-12 18:33:23,763 | INFO     | log transfer has been attempted: DONE
[2026-01-12 13:34:01] 2026-01-12 18:33:23,763 | INFO     | job 6967340008 has finished - writing final server update
[2026-01-12 13:34:01] 2026-01-12 18:33:23,763 | INFO     | total number of processed events: 50 (read)
[2026-01-12 13:34:01] 2026-01-12 18:33:23,765 | INFO     | executing command: lscpu
[2026-01-12 13:34:01] 2026-01-12 18:33:23,791 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 13:34:01] 2026-01-12 18:33:24,152 | INFO     | time since job start (2153s) is within the limit (349056.0s)
[2026-01-12 13:34:01] 2026-01-12 18:33:26,158 | INFO     | time since job start (2155s) is within the limit (349056.0s)
[2026-01-12 13:34:01] 2026-01-12 18:33:26,295 | WARNING  | process 12239 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 13:34:01] 2026-01-12 18:33:26,295 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:34:01] 2026-01-12 18:33:26,296 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:34:01] 2026-01-12 18:33:26,297 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-12 13:34:01] 2026-01-12 18:33:26,297 | WARNING  | maxPSS not found in memory monitor output
[2026-01-12 13:34:01] 2026-01-12 18:33:26,297 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 173425 B
[2026-01-12 13:34:01] 2026-01-12 18:33:26,297 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4229900 B
[2026-01-12 13:34:01] 2026-01-12 18:33:26,298 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13462 B
[2026-01-12 13:34:01] 2026-01-12 18:33:26,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 13:34:01] 2026-01-12 18:33:27,280 | INFO     | PID=5864 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 13:34:01] 2026-01-12 18:33:28,281 | INFO     | time since job start (2157s) is within the limit (349056.0s)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,542 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 13:34:01] 2026-01-12 18:33:28,550 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-12 13:34:01] 2026-01-12 18:33:28,552 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,553 | INFO     | extracted standard info from prmon json
[2026-01-12 13:34:01] 2026-01-12 18:33:28,553 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 13:34:01] 2026-01-12 18:33:28,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 13:34:01] 2026-01-12 18:33:28,554 | INFO     | fitting pss+swap vs Time
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | sum of square deviations: 6796868.107142857
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | sum of deviations: -1693579973.8214285
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | mean x: 1768241809.6785715
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | mean y: 2949404.464285714
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | intersect: 440596892164.4085
[2026-01-12 13:34:01] 2026-01-12 18:33:28,555 | INFO     | chi2: 0.23186290534325998
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | current memory leak: -249.17 B/s (using 28 data points, chi2=0.23)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | could have reported an average CPU frequency of 1868 MHz (5 samples)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | ..............................
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | . Timing measurements:
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | . get job = 0 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,556 | INFO     | . initial setup = 2 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | . payload setup = 7 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | . stage-in = 0 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | . payload execution = 2121 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | . stage-out = 0 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | . log creation = 0 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,557 | INFO     | ..............................
[2026-01-12 13:34:01] 2026-01-12 18:33:28,563 | INFO     | sufficient remaining disk space (29136781312 B)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,579 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,642 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6967340008: 9134043 B (within 4404019200 B limit)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,642 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6967340008/HITS.47962010._003309.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,642 | INFO     | total size of present files: 0 B (workdir size: 9134043 B)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,642 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6967340008/HITS.47962010._003309.pool.root.1 since it does not exist
[2026-01-12 13:34:01] 2026-01-12 18:33:28,644 | INFO     | 
[2026-01-12 13:34:01] 2026-01-12 18:33:28,644 | INFO     | job summary report
[2026-01-12 13:34:01] 2026-01-12 18:33:28,645 | INFO     | --------------------------------------------------
[2026-01-12 13:34:01] 2026-01-12 18:33:28,645 | INFO     | PanDA job id: 6967340008
[2026-01-12 13:34:01] 2026-01-12 18:33:28,645 | INFO     | task id: 47962010
[2026-01-12 13:34:01] 2026-01-12 18:33:28,645 | INFO     | errors: (none)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,645 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | pilot state: finished 
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | transexitcode: 0
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | exeerrorcode: 0
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | exeerrordiag: 
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | exitcode: 0
[2026-01-12 13:34:01] 2026-01-12 18:33:28,646 | INFO     | exitmsg: OK
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | cpuconsumptiontime: 19859 s
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | nevents: 50
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | neventsw: 0
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | pid: 12239
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | pgrp: 12239
[2026-01-12 13:34:01] 2026-01-12 18:33:28,647 | INFO     | corecount: 12
[2026-01-12 13:34:01] 2026-01-12 18:33:28,648 | INFO     | event service: False
[2026-01-12 13:34:01] 2026-01-12 18:33:28,648 | INFO     | sizes: {0: 2284569, 5: 2284831, 11: 2284887, 2133: 2310725, 2135: 2319719, 2136: 2319775, 2141: 2320181}
[2026-01-12 13:34:01] 2026-01-12 18:33:28,648 | INFO     | --------------------------------------------------
[2026-01-12 13:34:01] 2026-01-12 18:33:28,648 | INFO     | 
[2026-01-12 13:34:01] 2026-01-12 18:33:28,648 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 13:34:01] 2026-01-12 18:33:28,670 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,670 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,670 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,670 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,673 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,673 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 13:34:01] 2026-01-12 18:33:28,673 | INFO     | job 6967340008 has completed (purged errors)
[2026-01-12 13:34:01] 2026-01-12 18:33:28,673 | INFO     | overall cleanup function is called
[2026-01-12 13:34:01] 2026-01-12 18:33:28,745 | INFO     | number of running child processes to parent process 12239: 1
[2026-01-12 13:34:01] 2026-01-12 18:33:28,745 | INFO     | maximum number of monitored processes: 17
[2026-01-12 13:34:01] 2026-01-12 18:33:28,745 | INFO     | aborting job monitoring since job object (job id=6967340008) has expired
[2026-01-12 13:34:01] 2026-01-12 18:33:29,693 | INFO     | --- collectZombieJob: --- 10, [12239]
[2026-01-12 13:34:01] 2026-01-12 18:33:29,693 | INFO     | zombie collector waiting for pid 12239
[2026-01-12 13:34:01] 2026-01-12 18:33:29,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 13:34:01] 2026-01-12 18:33:29,694 | INFO     | collected zombie processes
[2026-01-12 13:34:01] 2026-01-12 18:33:29,694 | INFO     | will attempt to kill all subprocesses of pid=12239
[2026-01-12 13:34:01] 2026-01-12 18:33:29,782 | INFO     | process IDs to be killed: [12239] (in reverse order)
[2026-01-12 13:34:01] 2026-01-12 18:33:29,829 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 13:34:01] 2026-01-12 18:33:29,829 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 13:34:01] 2026-01-12 18:33:29,832 | INFO     | did not find any defunct processes belonging to 12239
[2026-01-12 13:34:01] 2026-01-12 18:33:29,835 | INFO     | did not find any defunct processes belonging to 12239
[2026-01-12 13:34:01] 2026-01-12 18:33:29,835 | INFO     | ready for new job
[2026-01-12 13:34:01] 2026-01-12 18:33:29,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 13:34:01] 2026-01-12 18:33:29,836 | INFO     | ***************************************
[2026-01-12 13:34:01] 2026-01-12 18:33:29,836 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 13:34:01] 2026-01-12 18:33:29,836 | INFO     | ***************************************
[2026-01-12 13:34:01] 2026-01-12 18:33:29,837 | INFO     | 
[2026-01-12 13:34:01] 2026-01-12 18:33:29,837 | INFO     | architecture information:
[2026-01-12 13:34:01] 2026-01-12 18:33:29,838 | INFO     | executing command: cat /etc/os-release
[2026-01-12 13:34:01] 2026-01-12 18:33:29,852 | INFO     | cat /etc/os-release:
[2026-01-12 13:34:01] NAME="CentOS Linux"
[2026-01-12 13:34:01] VERSION="7 (Core)"
[2026-01-12 13:34:01] ID="centos"
[2026-01-12 13:34:01] ID_LIKE="rhel fedora"
[2026-01-12 13:34:01] VERSION_ID="7"
[2026-01-12 13:34:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 13:34:01] ANSI_COLOR="0;31"
[2026-01-12 13:34:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 13:34:01] HOME_URL="https://www.centos.org/"
[2026-01-12 13:34:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 13:34:01] 
[2026-01-12 13:34:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 13:34:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 13:34:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 13:34:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 13:34:01] 
[2026-01-12 13:34:01] 2026-01-12 18:33:29,852 | INFO     | ***************************************
[2026-01-12 13:34:01] 2026-01-12 18:33:30,355 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 13:34:01] 2026-01-12 18:33:30,371 | INFO     | sufficient remaining disk space (29147267072 B)
[2026-01-12 13:34:01] 2026-01-12 18:33:30,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 13:34:01] 2026-01-12 18:33:30,372 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 13:34:01] 2026-01-12 18:33:30,372 | INFO     | update_server=False
[2026-01-12 13:34:01] 2026-01-12 18:33:30,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 13:34:01] 2026-01-12 18:33:30,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 13:34:01] 2026-01-12 18:33:30,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:34:01] 2026-01-12 18:33:30,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:34:01] 2026-01-12 18:33:30,374 | INFO     | aborting loop
[2026-01-12 13:34:01] 2026-01-12 18:33:30,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 13:34:01] 2026-01-12 18:33:31,234 | INFO     | all data control threads have been joined
[2026-01-12 13:34:01] 2026-01-12 18:33:31,377 | INFO     | [job] queue monitor thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,378 | INFO     | [job] job monitor thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,378 | INFO     | [job] retrieve thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,414 | INFO     | [payload] failed_post thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,451 | INFO     | all payload control threads have been joined
[2026-01-12 13:34:01] 2026-01-12 18:33:31,610 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,720 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:31,954 | INFO     | all job control threads have been joined
[2026-01-12 13:34:01] 2026-01-12 18:33:32,108 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,160 | INFO     | [data] copytool_in thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,240 | INFO     | [data] control thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,456 | INFO     | [payload] control thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,797 | INFO     | [job] validate thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,811 | INFO     | [data] copytool_out thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,920 | INFO     | [payload] validate_post thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:32,959 | INFO     | [job] control thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:34,146 | INFO     | [monitor] cgroup control has ended
[2026-01-12 13:34:01] 2026-01-12 18:33:34,379 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:40,861 | INFO     | job.realtimelogging is not enabled
[2026-01-12 13:34:01] 2026-01-12 18:33:41,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 13:34:01] 2026-01-12 18:33:42,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948543420224)>', '<ExcThread(monitor, started 139947809957632)>']
[2026-01-12 13:34:01] 2026-01-12 18:33:47,603 | INFO     | all workflow threads have been joined
[2026-01-12 13:34:01] 2026-01-12 18:33:47,603 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 13:34:01] 2026-01-12 18:33:47,603 | INFO     | traces error code: 0
[2026-01-12 13:34:01] 2026-01-12 18:33:47,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 13:34:01] 2026-01-12 18:34:01,474 | INFO     | PID=5864 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | CRITICAL | thread 'MainThread' is not alive
[2026-01-12 13:34:01] 2026-01-12 18:34:01,475 | INFO     | [monitor] control thread has ended
[2026-01-12 13:34:01] 2026-01-12 18:34:01,567 [wrapper] ==== pilot stdout END ====
[2026-01-12 13:34:01] 2026-01-12 18:34:01,571 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 13:34:01] 2026-01-12 18:34:01,575 [wrapper] pilotpid: 5864
[2026-01-12 13:34:01] 2026-01-12 18:34:01,579 [wrapper] Pilot exit status: 0
[2026-01-12 13:34:01] 2026-01-12 18:34:01,593 [wrapper] pandaids: 6967340008
[2026-01-12 13:34:01] 2026-01-12 18:34:01,633 [wrapper] cleanup supervisor_pilot 26011 5865
[2026-01-12 13:34:01] 2026-01-12 18:34:01,637 [wrapper] Test setup, not cleaning
[2026-01-12 13:34:01] 2026-01-12 18:34:01,641 [wrapper] apfmon messages muted
[2026-01-12 13:34:01] 2026-01-12 18:34:01,645 [wrapper] ==== wrapper stdout END ====
[2026-01-12 13:34:01] 2026-01-12 18:34:01,649 [wrapper] ==== wrapper stderr END ====
[2026-01-12 13:34:01]  *** Error codes and diagnostics ***
[2026-01-12 13:34:01]     "exeErrorCode": 0,
[2026-01-12 13:34:01]     "exeErrorDiag": "",
[2026-01-12 13:34:01]     "pilotErrorCode": 0,
[2026-01-12 13:34:01]     "pilotErrorDiag": "",
[2026-01-12 13:34:01]  *** Listing of results directory ***
[2026-01-12 13:34:01] total 437368
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 12:19 queuedata.json
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 12:19 pilot3.tar.gz
[2026-01-12 13:34:01] -rwx------ 1 boincer umatlas     36322 Jan 12 12:20 runpilot2-wrapper.sh
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas       100 Jan 12 12:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 13:34:01] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 12:57 run_atlas
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas       105 Jan 12 12:57 job.xml
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas 393177882 Jan 12 12:57 EVNT.47962006._000021.pool.root.1
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 12:57 start_atlas.sh
[2026-01-12 13:34:01] drwxrwx--x 2 boincer umatlas      4096 Jan 12 12:57 shared
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas    592617 Jan 12 12:57 input.tar.gz
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas         0 Jan 12 12:57 boinc_lockfile
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas      2890 Jan 12 12:57 pandaJob.out
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas        57 Jan 12 12:57 setup.sh.local
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas    988539 Jan 12 12:57 agis_schedconf.cvmfs.json
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas   1516240 Jan 12 12:57 agis_ddmendpoints.agis.ALL.json
[2026-01-12 13:34:01] drwx------ 5 boincer umatlas      4096 Jan 12 12:57 pilot3
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas       529 Jan 12 13:26 boinc_task_state.xml
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas      5953 Jan 12 13:28 init_data.xml
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas  46859194 Jan 12 13:33 HITS.47962010._003309.pool.root.1
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas      1049 Jan 12 13:33 memory_monitor_summary.json
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas   1609087 Jan 12 13:33 log.47962010._003309.job.log.tgz.1
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas      8613 Jan 12 13:33 heartbeat.json
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas        27 Jan 12 13:33 wrapper_checkpoint.txt
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 13:33 boinc_mmap_file
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas        95 Jan 12 13:34 pilot_heartbeat.json
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas       814 Jan 12 13:34 pilotlog.txt
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas    352117 Jan 12 13:34 log.47962010._003309.job.log.1
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas       353 Jan 12 13:34 output.list
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas       620 Jan 12 13:34 runtime_log
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas   1976320 Jan 12 13:34 result.tar.gz
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 13:34 runtime_log.err
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas       659 Jan 12 13:34 oQPLDmslaz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJzhKDmgd1spm.diag
[2026-01-12 13:34:01] -rw-r--r-- 1 boincer umatlas     22923 Jan 12 13:34 stderr.txt
[2026-01-12 13:34:01] HITS file was successfully produced:
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas 46859194 Jan 12 13:33 shared/HITS.pool.root.1
[2026-01-12 13:34:01]  *** Contents of shared directory: ***
[2026-01-12 13:34:01] total 432256
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas 393177882 Jan 12 12:57 ATLAS.root_0
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 12:57 start_atlas.sh
[2026-01-12 13:34:01] -rw-r--r-- 2 boincer umatlas    592617 Jan 12 12:57 input.tar.gz
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas  46859194 Jan 12 13:33 HITS.pool.root.1
[2026-01-12 13:34:01] -rw------- 1 boincer umatlas   1976320 Jan 12 13:34 result.tar.gz
13:34:03 (1702): run_atlas exited; CPU time 19496.450822
13:34:03 (1702): called boinc_finish(0)

</stderr_txt>
]]>


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