Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:58:44 (1178393): wrapper (7.7.26015): starting
05:58:44 (1178393): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 05:58:44] Arguments: --nthreads 4
[2026-01-13 05:58:44] Threads: 4
[2026-01-13 05:58:44] Checking for CVMFS
[2026-01-13 05:58:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 05:58:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 05:58:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 05:58:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 05:58:44] 2.9.2.0 971077 1124 89040 155077 1 253 36851196 36864000 0 130560 0 572986 99.984 39797 15618 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 05:58:44] CVMFS is ok
[2026-01-13 05:58:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 05:58:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 05:58:44] Further information can be found at the LHC@home message board.
[2026-01-13 05:58:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 05:58:44] Checking for apptainer binary...
[2026-01-13 05:58:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 05:58:44] Running /usr/bin/apptainer --version
[2026-01-13 05:58:44] apptainer version 1.4.1-1.1
[2026-01-13 05:58:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 05:58:45] thA381
[2026-01-13 05:58:45] apptainer works
[2026-01-13 05:58:45] Set ATHENA_PROC_NUMBER=4
[2026-01-13 05:58:45] Set ATHENA_CORE_NUMBER=4
[2026-01-13 05:58:45] Starting ATLAS job with PandaID=6967368402
[2026-01-13 05:58:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 06:33:02]  *** The last 200 lines of the pilot log: ***
[2026-01-13 06:33:02] 2026-01-13 05:32:25,632 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,632 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | job 6967368402 has completed (purged errors)
[2026-01-13 06:33:02] 2026-01-13 05:32:25,633 | INFO     | overall cleanup function is called
[2026-01-13 06:33:02] 2026-01-13 05:32:26,642 | INFO     | --- collectZombieJob: --- 10, [1188760]
[2026-01-13 06:33:02] 2026-01-13 05:32:26,643 | INFO     | zombie collector waiting for pid 1188760
[2026-01-13 06:33:02] 2026-01-13 05:32:26,643 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 06:33:02] 2026-01-13 05:32:26,643 | INFO     | collected zombie processes
[2026-01-13 06:33:02] 2026-01-13 05:32:26,643 | INFO     | will attempt to kill all subprocesses of pid=1188760
[2026-01-13 06:33:02] 2026-01-13 05:32:26,687 | INFO     | process IDs to be killed: [1188760] (in reverse order)
[2026-01-13 06:33:02] 2026-01-13 05:32:26,720 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 06:33:02] 2026-01-13 05:32:26,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 06:33:02] 2026-01-13 05:32:26,722 | INFO     | did not find any defunct processes belonging to 1188760
[2026-01-13 06:33:02] 2026-01-13 05:32:26,723 | INFO     | did not find any defunct processes belonging to 1188760
[2026-01-13 06:33:02] 2026-01-13 05:32:26,723 | INFO     | ready for new job
[2026-01-13 06:33:02] 2026-01-13 05:32:26,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 06:33:02] 2026-01-13 05:32:26,724 | INFO     | ***************************************
[2026-01-13 06:33:02] 2026-01-13 05:32:26,724 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 06:33:02] 2026-01-13 05:32:26,724 | INFO     | ***************************************
[2026-01-13 06:33:02] 2026-01-13 05:32:26,724 | INFO     | 
[2026-01-13 06:33:02] 2026-01-13 05:32:26,725 | INFO     | architecture information:
[2026-01-13 06:33:02] 2026-01-13 05:32:26,725 | INFO     | executing command: cat /etc/os-release
[2026-01-13 06:33:02] 2026-01-13 05:32:26,739 | INFO     | cat /etc/os-release:
[2026-01-13 06:33:02] NAME="CentOS Linux"
[2026-01-13 06:33:02] VERSION="7 (Core)"
[2026-01-13 06:33:02] ID="centos"
[2026-01-13 06:33:02] ID_LIKE="rhel fedora"
[2026-01-13 06:33:02] VERSION_ID="7"
[2026-01-13 06:33:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 06:33:02] ANSI_COLOR="0;31"
[2026-01-13 06:33:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 06:33:02] HOME_URL="https://www.centos.org/"
[2026-01-13 06:33:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 06:33:02] 
[2026-01-13 06:33:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 06:33:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 06:33:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 06:33:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 06:33:02] 
[2026-01-13 06:33:02] 2026-01-13 05:32:26,740 | INFO     | ***************************************
[2026-01-13 06:33:02] 2026-01-13 05:32:27,243 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 06:33:02] 2026-01-13 05:32:27,261 | INFO     | sufficient remaining disk space (224030359552 B)
[2026-01-13 06:33:02] 2026-01-13 05:32:27,261 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 06:33:02] 2026-01-13 05:32:27,262 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 06:33:02] 2026-01-13 05:32:27,262 | INFO     | update_server=False
[2026-01-13 06:33:02] 2026-01-13 05:32:27,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 06:33:02] 2026-01-13 05:32:27,262 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 06:33:02] 2026-01-13 05:32:27,701 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 06:33:02] 2026-01-13 05:32:27,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 06:33:02] 2026-01-13 05:32:27,964 | INFO     | aborting loop
[2026-01-13 06:33:02] 2026-01-13 05:32:27,983 | INFO     | all job control threads have been joined
[2026-01-13 06:33:02] 2026-01-13 05:32:28,172 | INFO     | all data control threads have been joined
[2026-01-13 06:33:02] 2026-01-13 05:32:28,267 | INFO     | [job] retrieve thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,268 | INFO     | [job] queue monitor thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,296 | INFO     | [payload] validate_post thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,582 | INFO     | all payload control threads have been joined
[2026-01-13 06:33:02] 2026-01-13 05:32:28,602 | INFO     | [data] copytool_in thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,969 | INFO     | [payload] failed_post thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,970 | INFO     | [job] job monitor thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:28,988 | INFO     | [job] control thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,176 | INFO     | [data] control thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,254 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,441 | INFO     | [job] validate thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,487 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,582 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,588 | INFO     | [payload] control thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:29,708 | INFO     | [data] copytool_out thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:30,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 06:33:02] 2026-01-13 05:32:34,247 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:38,305 | INFO     | job.realtimelogging is not enabled
[2026-01-13 06:33:02] 2026-01-13 05:32:39,311 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 06:33:02] 2026-01-13 05:32:54,880 | INFO     | [monitor] cgroup control has ended
[2026-01-13 06:33:02] 2026-01-13 05:32:56,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774517536576)>', '<ExcThread(monitor, started 139773695993600)>']
[2026-01-13 06:33:02] 2026-01-13 05:32:57,695 | INFO     | PID=1182188 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 06:33:02] 2026-01-13 05:32:57,696 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 06:33:02] 2026-01-13 05:32:57,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 06:33:02] 2026-01-13 05:32:57,696 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 06:33:02] 2026-01-13 05:32:57,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 06:33:02] 2026-01-13 05:32:57,696 | INFO     | [monitor] control thread has ended
[2026-01-13 06:33:02] 2026-01-13 05:33:01,849 | INFO     | all workflow threads have been joined
[2026-01-13 06:33:02] 2026-01-13 05:33:01,849 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 06:33:02] 2026-01-13 05:33:01,849 | INFO     | traces error code: 0
[2026-01-13 06:33:02] 2026-01-13 05:33:01,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 06:33:02] 2026-01-13 05:33:01,930 [wrapper] ==== pilot stdout END ====
[2026-01-13 06:33:02] 2026-01-13 05:33:01,935 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 06:33:02] 2026-01-13 05:33:01,939 [wrapper] pilotpid: 1182188
[2026-01-13 06:33:02] 2026-01-13 05:33:01,943 [wrapper] Pilot exit status: 0
[2026-01-13 06:33:02] 2026-01-13 05:33:01,954 [wrapper] pandaids: 6967368402
[2026-01-13 06:33:02] 2026-01-13 05:33:01,977 [wrapper] cleanup supervisor_pilot 1195961 1182189
[2026-01-13 06:33:02] 2026-01-13 05:33:01,980 [wrapper] Test setup, not cleaning
[2026-01-13 06:33:02] 2026-01-13 05:33:01,984 [wrapper] apfmon messages muted
[2026-01-13 06:33:02] 2026-01-13 05:33:01,988 [wrapper] ==== wrapper stdout END ====
[2026-01-13 06:33:02] 2026-01-13 05:33:01,992 [wrapper] ==== wrapper stderr END ====
[2026-01-13 06:33:02]  *** Error codes and diagnostics ***
[2026-01-13 06:33:02]     "exeErrorCode": 0,
[2026-01-13 06:33:02]     "exeErrorDiag": "",
[2026-01-13 06:33:02]     "pilotErrorCode": 0,
[2026-01-13 06:33:02]     "pilotErrorDiag": "",
[2026-01-13 06:33:02]  *** Listing of results directory ***
[2026-01-13 06:33:02] total 433488
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc    579449 Jan 12 18:19 pilot3.tar.gz
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc      5112 Jan 12 18:49 queuedata.json
[2026-01-13 06:33:02] -rwx------ 1 boinc boinc     36322 Jan 12 18:53 runpilot2-wrapper.sh
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc       100 Jan 13 05:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 06:33:02] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 05:58 run_atlas
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc       105 Jan 13 05:58 job.xml
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc 393999209 Jan 13 05:58 EVNT.47962006._000095.pool.root.1
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc    592617 Jan 13 05:58 input.tar.gz
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc     15847 Jan 13 05:58 start_atlas.sh
[2026-01-13 06:33:02] drwxrwx--x 2 boinc boinc      4096 Jan 13 05:58 shared
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc         0 Jan 13 05:58 boinc_setup_complete
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc      6376 Jan 13 05:58 init_data.xml
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc         0 Jan 13 05:58 boinc_lockfile
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc      2889 Jan 13 05:58 pandaJob.out
[2026-01-13 06:33:02] -rw------- 1 boinc boinc    987755 Jan 13 05:58 agis_schedconf.cvmfs.json
[2026-01-13 06:33:02] -rw------- 1 boinc boinc   1516240 Jan 13 05:58 agis_ddmendpoints.agis.ALL.json
[2026-01-13 06:33:02] drwx------ 5 boinc boinc      4096 Jan 13 05:58 pilot3
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc       528 Jan 13 06:28 boinc_task_state.xml
[2026-01-13 06:33:02] -rw------- 1 boinc boinc        95 Jan 13 06:32 pilot_heartbeat.json
[2026-01-13 06:33:02] -rw------- 1 boinc boinc  43838320 Jan 13 06:32 HITS.47962010._003368.pool.root.1
[2026-01-13 06:33:02] -rw------- 1 boinc boinc      1013 Jan 13 06:32 memory_monitor_summary.json
[2026-01-13 06:33:02] -rw------- 1 boinc boinc    736984 Jan 13 06:32 log.47962010._003368.job.log.tgz.1
[2026-01-13 06:33:02] -rw------- 1 boinc boinc      8523 Jan 13 06:32 heartbeat.json
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc      8192 Jan 13 06:32 boinc_mmap_file
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc        26 Jan 13 06:32 wrapper_checkpoint.txt
[2026-01-13 06:33:02] -rw------- 1 boinc boinc      4824 Jan 13 06:33 pilotlog.txt
[2026-01-13 06:33:02] -rw------- 1 boinc boinc    334078 Jan 13 06:33 log.47962010._003368.job.log.1
[2026-01-13 06:33:02] -rw------- 1 boinc boinc       353 Jan 13 06:33 output.list
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc       620 Jan 13 06:33 runtime_log
[2026-01-13 06:33:02] -rw------- 1 boinc boinc   1095680 Jan 13 06:33 result.tar.gz
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc      8897 Jan 13 06:33 runtime_log.err
[2026-01-13 06:33:02] -rw------- 1 boinc boinc       657 Jan 13 06:33 FF9KDmEIbz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmymnKDmluMUIm.diag
[2026-01-13 06:33:02] -rw-r--r-- 1 boinc boinc     12924 Jan 13 06:33 stderr.txt
[2026-01-13 06:33:02] HITS file was successfully produced:
[2026-01-13 06:33:02] -rw------- 1 boinc boinc 43838320 Jan 13 06:32 shared/HITS.pool.root.1
[2026-01-13 06:33:02]  *** Contents of shared directory: ***
[2026-01-13 06:33:02] total 429252
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc 393999209 Jan 13 05:58 ATLAS.root_0
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc    592617 Jan 13 05:58 input.tar.gz
[2026-01-13 06:33:02] -rw-r--r-- 2 boinc boinc     15847 Jan 13 05:58 start_atlas.sh
[2026-01-13 06:33:02] -rw------- 1 boinc boinc  43838320 Jan 13 06:32 HITS.pool.root.1
[2026-01-13 06:33:02] -rw------- 1 boinc boinc   1095680 Jan 13 06:33 result.tar.gz
06:33:03 (1178393): run_atlas exited; CPU time 5877.854776
06:33:03 (1178393): called boinc_finish(0)

</stderr_txt>
]]>

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