Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:06:15 (1430484): wrapper (7.7.26015): starting
03:06:15 (1430484): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 03:06:15] Arguments: --nthreads 4
[2026-01-13 03:06:15] Threads: 4
[2026-01-13 03:06:15] Checking for CVMFS
[2026-01-13 03:06:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 03:06:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 03:06:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 03:06:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 03:06:15] 2.9.2.0 1272165 1011 69052 155072 2 110 36860147 36864001 0 130560 0 444163 99.986 32825 7714 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 03:06:15] CVMFS is ok
[2026-01-13 03:06:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 03:06:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 03:06:15] Further information can be found at the LHC@home message board.
[2026-01-13 03:06:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 03:06:15] Checking for apptainer binary...
[2026-01-13 03:06:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 03:06:15] Running /usr/bin/apptainer --version
[2026-01-13 03:06:15] apptainer version 1.4.1-1.1
[2026-01-13 03:06:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 03:06:15] thA315a
[2026-01-13 03:06:15] apptainer works
[2026-01-13 03:06:15] Set ATHENA_PROC_NUMBER=4
[2026-01-13 03:06:15] Set ATHENA_CORE_NUMBER=4
[2026-01-13 03:06:15] Starting ATLAS job with PandaID=6967340005
[2026-01-13 03:06:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 03:39:30]  *** The last 200 lines of the pilot log: ***
[2026-01-13 03:39:30] 2026-01-13 02:38:47,673 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 03:39:30] 2026-01-13 02:38:47,673 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 03:39:30] 2026-01-13 02:38:47,673 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 03:39:30] 2026-01-13 02:38:47,673 | INFO     | job 6967340005 has completed (purged errors)
[2026-01-13 03:39:30] 2026-01-13 02:38:47,673 | INFO     | overall cleanup function is called
[2026-01-13 03:39:30] 2026-01-13 02:38:48,682 | INFO     | --- collectZombieJob: --- 10, [1440871]
[2026-01-13 03:39:30] 2026-01-13 02:38:48,682 | INFO     | zombie collector waiting for pid 1440871
[2026-01-13 03:39:30] 2026-01-13 02:38:48,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 03:39:30] 2026-01-13 02:38:48,682 | INFO     | collected zombie processes
[2026-01-13 03:39:30] 2026-01-13 02:38:48,682 | INFO     | will attempt to kill all subprocesses of pid=1440871
[2026-01-13 03:39:30] 2026-01-13 02:38:48,727 | INFO     | process IDs to be killed: [1440871] (in reverse order)
[2026-01-13 03:39:30] 2026-01-13 02:38:48,759 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 03:39:30] 2026-01-13 02:38:48,759 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 03:39:30] 2026-01-13 02:38:48,760 | INFO     | did not find any defunct processes belonging to 1440871
[2026-01-13 03:39:30] 2026-01-13 02:38:48,762 | INFO     | did not find any defunct processes belonging to 1440871
[2026-01-13 03:39:30] 2026-01-13 02:38:48,762 | INFO     | ready for new job
[2026-01-13 03:39:30] 2026-01-13 02:38:48,762 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 03:39:30] 2026-01-13 02:38:48,762 | INFO     | ***************************************
[2026-01-13 03:39:30] 2026-01-13 02:38:48,763 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 03:39:30] 2026-01-13 02:38:48,763 | INFO     | ***************************************
[2026-01-13 03:39:30] 2026-01-13 02:38:48,763 | INFO     | 
[2026-01-13 03:39:30] 2026-01-13 02:38:48,763 | INFO     | architecture information:
[2026-01-13 03:39:30] 2026-01-13 02:38:48,763 | INFO     | executing command: cat /etc/os-release
[2026-01-13 03:39:30] 2026-01-13 02:38:48,776 | INFO     | cat /etc/os-release:
[2026-01-13 03:39:30] NAME="CentOS Linux"
[2026-01-13 03:39:30] VERSION="7 (Core)"
[2026-01-13 03:39:30] ID="centos"
[2026-01-13 03:39:30] ID_LIKE="rhel fedora"
[2026-01-13 03:39:30] VERSION_ID="7"
[2026-01-13 03:39:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 03:39:30] ANSI_COLOR="0;31"
[2026-01-13 03:39:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 03:39:30] HOME_URL="https://www.centos.org/"
[2026-01-13 03:39:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 03:39:30] 
[2026-01-13 03:39:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 03:39:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 03:39:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 03:39:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 03:39:30] 
[2026-01-13 03:39:30] 2026-01-13 02:38:48,777 | INFO     | ***************************************
[2026-01-13 03:39:30] 2026-01-13 02:38:49,280 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 03:39:30] 2026-01-13 02:38:49,297 | INFO     | sufficient remaining disk space (242912067584 B)
[2026-01-13 03:39:30] 2026-01-13 02:38:49,297 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 03:39:30] 2026-01-13 02:38:49,298 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 03:39:30] 2026-01-13 02:38:49,298 | INFO     | update_server=False
[2026-01-13 03:39:30] 2026-01-13 02:38:49,298 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 03:39:30] 2026-01-13 02:38:49,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 03:39:30] 2026-01-13 02:38:49,298 | INFO     | aborting loop
[2026-01-13 03:39:30] 2026-01-13 02:38:49,370 | INFO     | all job control threads have been joined
[2026-01-13 03:39:30] 2026-01-13 02:38:49,452 | INFO     | all data control threads have been joined
[2026-01-13 03:39:30] 2026-01-13 02:38:50,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 03:39:30] 2026-01-13 02:38:50,303 | INFO     | [job] retrieve thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,304 | INFO     | [job] job monitor thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,331 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,376 | INFO     | [job] control thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,377 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,458 | INFO     | [data] control thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,538 | INFO     | all payload control threads have been joined
[2026-01-13 03:39:30] 2026-01-13 02:38:50,668 | INFO     | [data] copytool_in thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:50,738 | INFO     | [payload] validate_post thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:51,544 | INFO     | [payload] control thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:51,561 | INFO     | [payload] failed_post thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:51,686 | INFO     | [job] validate thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:51,703 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:52,087 | INFO     | [data] copytool_out thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:52,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 03:39:30] 2026-01-13 02:38:52,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 03:39:30] 2026-01-13 02:38:53,253 | INFO     | [job] queue monitor thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:56,623 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:38:59,687 | INFO     | job.realtimelogging is not enabled
[2026-01-13 03:39:30] 2026-01-13 02:39:00,693 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 03:39:30] 2026-01-13 02:39:19,030 | INFO     | PID=1434281 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 03:39:30] 2026-01-13 02:39:19,030 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 03:39:30] 2026-01-13 02:39:19,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 03:39:30] 2026-01-13 02:39:19,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 03:39:30] 2026-01-13 02:39:24,892 | INFO     | [monitor] cgroup control has ended
[2026-01-13 03:39:30] 2026-01-13 02:39:25,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139970606942016)>', '<ExcThread(monitor, started 139969720985344)>']
[2026-01-13 03:39:30] 2026-01-13 02:39:26,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 03:39:30] 2026-01-13 02:39:26,067 | INFO     | [monitor] control thread has ended
[2026-01-13 03:39:30] 2026-01-13 02:39:30,513 | INFO     | all workflow threads have been joined
[2026-01-13 03:39:30] 2026-01-13 02:39:30,513 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 03:39:30] 2026-01-13 02:39:30,514 | INFO     | traces error code: 0
[2026-01-13 03:39:30] 2026-01-13 02:39:30,515 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 03:39:30] 2026-01-13 02:39:30,583 [wrapper] ==== pilot stdout END ====
[2026-01-13 03:39:30] 2026-01-13 02:39:30,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 03:39:30] 2026-01-13 02:39:30,590 [wrapper] pilotpid: 1434281
[2026-01-13 03:39:30] 2026-01-13 02:39:30,594 [wrapper] Pilot exit status: 0
[2026-01-13 03:39:30] 2026-01-13 02:39:30,604 [wrapper] pandaids: 6967340005
[2026-01-13 03:39:30] 2026-01-13 02:39:30,625 [wrapper] cleanup supervisor_pilot 1448063 1434282
[2026-01-13 03:39:30] 2026-01-13 02:39:30,628 [wrapper] Test setup, not cleaning
[2026-01-13 03:39:30] 2026-01-13 02:39:30,632 [wrapper] apfmon messages muted
[2026-01-13 03:39:30] 2026-01-13 02:39:30,635 [wrapper] ==== wrapper stdout END ====
[2026-01-13 03:39:30] 2026-01-13 02:39:30,639 [wrapper] ==== wrapper stderr END ====
[2026-01-13 03:39:30]  *** Error codes and diagnostics ***
[2026-01-13 03:39:30]     "exeErrorCode": 0,
[2026-01-13 03:39:30]     "exeErrorDiag": "",
[2026-01-13 03:39:30]     "pilotErrorCode": 0,
[2026-01-13 03:39:30]     "pilotErrorDiag": "",
[2026-01-13 03:39:30]  *** Listing of results directory ***
[2026-01-13 03:39:30] total 433224
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc    597923 Jan  7 14:01 pilot3.tar.gz
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc      5112 Jan 12 18:19 queuedata.json
[2026-01-13 03:39:30] -rwx------ 1 boinc boinc     36322 Jan 12 18:23 runpilot2-wrapper.sh
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc       100 Jan 13 03:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 03:39:30] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 03:06 run_atlas
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc       105 Jan 13 03:06 job.xml
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc 391877451 Jan 13 03:06 EVNT.47962006._000019.pool.root.1
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc    610735 Jan 13 03:06 input.tar.gz
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc     15847 Jan 13 03:06 start_atlas.sh
[2026-01-13 03:39:30] drwxrwx--x 2 boinc boinc      4096 Jan 13 03:06 shared
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc         0 Jan 13 03:06 boinc_setup_complete
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc      6371 Jan 13 03:06 init_data.xml
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc         0 Jan 13 03:06 boinc_lockfile
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc      2890 Jan 13 03:06 pandaJob.out
[2026-01-13 03:39:30] -rw------- 1 boinc boinc    987763 Jan 13 03:06 agis_schedconf.cvmfs.json
[2026-01-13 03:39:30] -rw------- 1 boinc boinc   1516240 Jan 13 03:06 agis_ddmendpoints.agis.ALL.json
[2026-01-13 03:39:30] drwx------ 7 boinc boinc      4096 Jan 13 03:06 pilot3
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc       528 Jan 13 03:35 boinc_task_state.xml
[2026-01-13 03:39:30] -rw------- 1 boinc boinc  45686498 Jan 13 03:38 HITS.47962010._003306.pool.root.1
[2026-01-13 03:39:30] -rw------- 1 boinc boinc        95 Jan 13 03:38 pilot_heartbeat.json
[2026-01-13 03:39:30] -rw------- 1 boinc boinc      1013 Jan 13 03:38 memory_monitor_summary.json
[2026-01-13 03:39:30] -rw------- 1 boinc boinc    732227 Jan 13 03:38 log.47962010._003306.job.log.tgz.1
[2026-01-13 03:39:30] -rw------- 1 boinc boinc      8532 Jan 13 03:38 heartbeat.json
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc      8192 Jan 13 03:39 boinc_mmap_file
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc        26 Jan 13 03:39 wrapper_checkpoint.txt
[2026-01-13 03:39:30] -rw------- 1 boinc boinc      4824 Jan 13 03:39 pilotlog.txt
[2026-01-13 03:39:30] -rw------- 1 boinc boinc    327256 Jan 13 03:39 log.47962010._003306.job.log.1
[2026-01-13 03:39:30] -rw------- 1 boinc boinc       353 Jan 13 03:39 output.list
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc       620 Jan 13 03:39 runtime_log
[2026-01-13 03:39:30] -rw------- 1 boinc boinc   1075200 Jan 13 03:39 result.tar.gz
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc      8902 Jan 13 03:39 runtime_log.err
[2026-01-13 03:39:30] -rw------- 1 boinc boinc       658 Jan 13 03:39 1mKODmLoaz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2lnKDmcIywjm.diag
[2026-01-13 03:39:30] -rw-r--r-- 1 boinc boinc     11205 Jan 13 03:39 stderr.txt
[2026-01-13 03:39:30] HITS file was successfully produced:
[2026-01-13 03:39:30] -rw------- 1 boinc boinc 45686498 Jan 13 03:38 shared/HITS.pool.root.1
[2026-01-13 03:39:30]  *** Contents of shared directory: ***
[2026-01-13 03:39:30] total 428988
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc 391877451 Jan 13 03:06 ATLAS.root_0
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc    610735 Jan 13 03:06 input.tar.gz
[2026-01-13 03:39:30] -rw-r--r-- 2 boinc boinc     15847 Jan 13 03:06 start_atlas.sh
[2026-01-13 03:39:30] -rw------- 1 boinc boinc  45686498 Jan 13 03:38 HITS.pool.root.1
[2026-01-13 03:39:30] -rw------- 1 boinc boinc   1075200 Jan 13 03:39 result.tar.gz
03:39:31 (1430484): run_atlas exited; CPU time 5717.941890
03:39:31 (1430484): called boinc_finish(0)

</stderr_txt>
]]>

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