Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:45:46 (15201): wrapper (7.7.26015): starting
21:45:46 (15201): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 21:45:46] Arguments: --nthreads 8
[2026-01-12 21:45:46] Threads: 8
[2026-01-12 21:45:46] Checking for CVMFS
[2026-01-12 21:45:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 21:45:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 21:45:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 21:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 21:45:46] 2.11.0.0 13282 133730 107816 155065 2 87 2311427 4096001 358 130560 1 14962250 99.581 13030132 708 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-12 21:45:46] CVMFS is ok
[2026-01-12 21:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 21:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 21:45:46] Further information can be found at the LHC@home message board.
[2026-01-12 21:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 21:45:46] Checking for apptainer binary...
[2026-01-12 21:45:46] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-12 21:45:46] apptainer is not installed, using version from CVMFS
[2026-01-12 21:45:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 21:45:47] WARNING: Environment variable TMPDIR already has value [/tmp/job_11013123/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node022
[2026-01-12 21:45:47] apptainer works
[2026-01-12 21:45:47] Set ATHENA_PROC_NUMBER=8
[2026-01-12 21:45:47] Set ATHENA_CORE_NUMBER=8
[2026-01-12 21:45:47] Starting ATLAS job with PandaID=6967339965
[2026-01-12 21:45:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11013123/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 22:12:20]  *** The last 200 lines of the pilot log: ***
[2026-01-12 22:12:20]  is_altstaged=None
[2026-01-12 22:12:20]  is_tar=False
[2026-01-12 22:12:20]  lfn=log.47962010._003266.job.log.tgz.1
[2026-01-12 22:12:20]  mtime=0
[2026-01-12 22:12:20]  protocol_id=None
[2026-01-12 22:12:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-12 22:12:20]  replicas=None
[2026-01-12 22:12:20]  scope=mc16_13TeV
[2026-01-12 22:12:20]  status=None
[2026-01-12 22:12:20]  status_code=0
[2026-01-12 22:12:20]  storage_token=
[2026-01-12 22:12:20]  surl=/tmp/job_11013123/atlas/pilot/slots/0/PanDA_Pilot-6967339965/log.47962010._003266.job.log.tgz.1
[2026-01-12 22:12:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/31/96/log.47962010._003266.job.log.tgz.1
[2026-01-12 22:12:20]  workdir=None
[2026-01-12 22:12:20] ]
[2026-01-12 22:12:20] 2026-01-12 21:11:44,635 | INFO     | transferring file log.47962010._003266.job.log.tgz.1 from /tmp/job_11013123/atlas/pilot/slots/0/PanDA_Pilot-6967339965/log.47962010._003266.job.log.tgz.1 to /tmp/j
[2026-01-12 22:12:20] 2026-01-12 21:11:44,635 | INFO     | executing command: /usr/bin/env mv /tmp/job_11013123/atlas/pilot/slots/0/PanDA_Pilot-6967339965/log.47962010._003266.job.log.tgz.1 /tmp/job_11013123/atlas/pilot/sl
[2026-01-12 22:12:20] 2026-01-12 21:11:44,645 | INFO     | adding to output.list: log.47962010._003266.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/31/96/log.47962010._003266.job.log.tgz.
[2026-01-12 22:12:20] 2026-01-12 21:11:44,646 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 22:12:20] 2026-01-12 21:11:44,646 | INFO     | summary of transferred files:
[2026-01-12 22:12:20] 2026-01-12 21:11:44,646 | INFO     |  -- lfn=log.47962010._003266.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 22:12:20] 2026-01-12 21:11:44,646 | INFO     | stage-out finished correctly
[2026-01-12 22:12:20] 2026-01-12 21:11:44,727 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 22:12:20] 2026-01-12 21:11:44,835 | INFO     | time since job start (1552s) is within the limit (349056.0s)
[2026-01-12 22:12:20] 2026-01-12 21:11:45,315 | INFO     | monitor loop #120: job 0:6967339965 is in state 'finished'
[2026-01-12 22:12:20] 2026-01-12 21:11:45,315 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 22:12:20] 2026-01-12 21:11:45,978 | INFO     | job 6967339965 has state=finished
[2026-01-12 22:12:20] 2026-01-12 21:11:45,978 | INFO     | preparing for final server update for job 6967339965 in state='finished'
[2026-01-12 22:12:20] 2026-01-12 21:11:45,979 | INFO     | this job has now completed (state=finished)
[2026-01-12 22:12:20] 2026-01-12 21:11:45,979 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 22:12:20] 2026-01-12 21:11:45,979 | INFO     | log transfer has been attempted: DONE
[2026-01-12 22:12:20] 2026-01-12 21:11:45,979 | INFO     | job 6967339965 has finished - writing final server update
[2026-01-12 22:12:20] 2026-01-12 21:11:45,979 | INFO     | total number of processed events: 50 (read)
[2026-01-12 22:12:20] 2026-01-12 21:11:45,980 | INFO     | executing command: lscpu
[2026-01-12 22:12:20] 2026-01-12 21:11:46,022 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 22:12:20] 2026-01-12 21:11:46,841 | INFO     | time since job start (1554s) is within the limit (349056.0s)
[2026-01-12 22:12:20] 2026-01-12 21:11:47,817 | INFO     | monitor loop #121: job 0:6967339965 is in state 'finished'
[2026-01-12 22:12:20] 2026-01-12 21:11:47,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,107 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 22:12:20] 2026-01-12 21:11:48,115 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2357.15553125
[2026-01-12 22:12:20] 2026-01-12 21:11:48,125 | INFO     | using path: /tmp/job_11013123/atlas/pilot/slots/0/PanDA_Pilot-6967339965/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,126 | INFO     | extracted standard info from prmon json
[2026-01-12 22:12:20] 2026-01-12 21:11:48,126 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 22:12:20] 2026-01-12 21:11:48,126 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | fitting pss+swap vs Time
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | sum of square deviations: 2120970.0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | sum of deviations: -143222753.99999994
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | mean x: 1768251625.0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | mean y: 2535902.210526316
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | intersect: 119407274063.27605
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | chi2: 0.13782873770009735
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | current memory leak: -67.53 B/s (using 19 data points, chi2=0.14)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | could have reported an average CPU frequency of 2364 MHz (4 samples)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | ..............................
[2026-01-12 22:12:20] 2026-01-12 21:11:48,127 | INFO     | . Timing measurements:
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . get job = 0 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . initial setup = 1 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . payload setup = 2 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . stage-in = 0 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . payload execution = 1532 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . stage-out = 0 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | . log creation = 0 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,128 | INFO     | ..............................
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | 
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | job summary report
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | --------------------------------------------------
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | PanDA job id: 6967339965
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | task id: 47962010
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | errors: (none)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | pilot state: finished 
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | transexitcode: 0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | exeerrorcode: 0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | exeerrordiag: 
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | exitcode: 0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | exitmsg: OK
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | cpuconsumptiontime: 8621 s
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | nevents: 50
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | neventsw: 0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | pid: 28830
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | pgrp: 28830
[2026-01-12 22:12:20] 2026-01-12 21:11:48,179 | INFO     | corecount: 8
[2026-01-12 22:12:20] 2026-01-12 21:11:48,180 | INFO     | event service: False
[2026-01-12 22:12:20] 2026-01-12 21:11:48,180 | INFO     | sizes: {0: 2284695, 3: 2284957, 11: 2284985, 1538: 2310385, 1539: 2319464, 1542: 2319654}
[2026-01-12 22:12:20] 2026-01-12 21:11:48,180 | INFO     | --------------------------------------------------
[2026-01-12 22:12:20] 2026-01-12 21:11:48,180 | INFO     | 
[2026-01-12 22:12:20] 2026-01-12 21:11:48,180 | INFO     | executing command: ls -lF /tmp/job_11013123/atlas/pilot/slots/0
[2026-01-12 22:12:20] 2026-01-12 21:11:48,190 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,190 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,190 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | job 6967339965 has completed (purged errors)
[2026-01-12 22:12:20] 2026-01-12 21:11:48,191 | INFO     | overall cleanup function is called
[2026-01-12 22:12:20] 2026-01-12 21:11:49,199 | INFO     | --- collectZombieJob: --- 10, [28830]
[2026-01-12 22:12:20] 2026-01-12 21:11:49,199 | INFO     | zombie collector waiting for pid 28830
[2026-01-12 22:12:20] 2026-01-12 21:11:49,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 22:12:20] 2026-01-12 21:11:49,199 | INFO     | collected zombie processes
[2026-01-12 22:12:20] 2026-01-12 21:11:49,199 | INFO     | will attempt to kill all subprocesses of pid=28830
[2026-01-12 22:12:20] 2026-01-12 21:11:49,360 | INFO     | process IDs to be killed: [28830] (in reverse order)
[2026-01-12 22:12:20] 2026-01-12 21:11:49,405 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 22:12:20] 2026-01-12 21:11:49,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 22:12:20] 2026-01-12 21:11:49,414 | INFO     | did not find any defunct processes belonging to 28830
[2026-01-12 22:12:20] 2026-01-12 21:11:49,418 | INFO     | did not find any defunct processes belonging to 28830
[2026-01-12 22:12:20] 2026-01-12 21:11:49,418 | INFO     | ready for new job
[2026-01-12 22:12:20] 2026-01-12 21:11:49,418 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 22:12:20] 2026-01-12 21:11:49,419 | INFO     | ***************************************
[2026-01-12 22:12:20] 2026-01-12 21:11:49,419 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 22:12:20] 2026-01-12 21:11:49,419 | INFO     | ***************************************
[2026-01-12 22:12:20] 2026-01-12 21:11:49,419 | INFO     | 
[2026-01-12 22:12:20] 2026-01-12 21:11:49,435 | INFO     | architecture information:
[2026-01-12 22:12:20] 2026-01-12 21:11:49,435 | INFO     | executing command: cat /etc/os-release
[2026-01-12 22:12:20] 2026-01-12 21:11:49,442 | INFO     | cat /etc/os-release:
[2026-01-12 22:12:20] NAME="CentOS Linux"
[2026-01-12 22:12:20] VERSION="7 (Core)"
[2026-01-12 22:12:20] ID="centos"
[2026-01-12 22:12:20] ID_LIKE="rhel fedora"
[2026-01-12 22:12:20] VERSION_ID="7"
[2026-01-12 22:12:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 22:12:20] ANSI_COLOR="0;31"
[2026-01-12 22:12:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 22:12:20] HOME_URL="https://www.centos.org/"
[2026-01-12 22:12:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 22:12:20] 
[2026-01-12 22:12:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 22:12:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 22:12:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 22:12:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 22:12:20] 
[2026-01-12 22:12:20] 2026-01-12 21:11:49,442 | INFO     | ***************************************
[2026-01-12 22:12:20] 2026-01-12 21:11:49,945 | INFO     | executing command: df -mP /tmp/job_11013123/atlas/pilot/slots/0
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | INFO     | sufficient remaining disk space (225669283840 B)
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | INFO     | update_server=False
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 22:12:20] 2026-01-12 21:11:49,952 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 22:12:20] 2026-01-12 21:11:50,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 22:12:20] 2026-01-12 21:11:50,208 | INFO     | all payload control threads have been joined
[2026-01-12 22:12:20] 2026-01-12 21:11:50,320 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 22:12:20] 2026-01-12 21:11:50,320 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 22:12:20] 2026-01-12 21:11:50,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 22:12:20] 2026-01-12 21:11:50,320 | INFO     | will abort loop
[2026-01-12 22:12:20] 2026-01-12 21:11:50,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 22:12:20] 2026-01-12 21:11:50,954 | INFO     | all data control threads have been joined
[2026-01-12 22:12:20] 2026-01-12 21:11:50,954 | INFO     | [job] retrieve thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:50,957 | INFO     | [job] queue monitor thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,147 | INFO     | [data] copytool_in thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,213 | INFO     | [payload] control thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,222 | INFO     | [payload] failed_post thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,325 | INFO     | [job] job monitor thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,405 | INFO     | all job control threads have been joined
[2026-01-12 22:12:20] 2026-01-12 21:11:51,556 | INFO     | [job] validate thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,681 | INFO     | [payload] validate_post thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,782 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,837 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:51,960 | INFO     | [data] control thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:52,212 | INFO     | [data] copytool_out thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:52,410 | INFO     | [job] control thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:52,417 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:11:54,550 | INFO     | [monitor] cgroup control has ended
[2026-01-12 22:12:20] 2026-01-12 21:11:54,784 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:12:00,854 | INFO     | job.realtimelogging is not enabled
[2026-01-12 22:12:20] 2026-01-12 21:12:01,859 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 22:12:20] 2026-01-12 21:12:03,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2026-01-12 22:12:20] 2026-01-12 21:12:08,500 | INFO     | all workflow threads have been joined
[2026-01-12 22:12:20] 2026-01-12 21:12:08,500 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 22:12:20] 2026-01-12 21:12:08,500 | INFO     | traces error code: 0
[2026-01-12 22:12:20] 2026-01-12 21:12:08,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | INFO     | PID=20053 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 22:12:20] 2026-01-12 21:12:20,106 | INFO     | [monitor] control thread has ended
[2026-01-12 22:12:20] 2026-01-12 21:12:20,174 [wrapper] ==== pilot stdout END ====
[2026-01-12 22:12:20] 2026-01-12 21:12:20,176 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 22:12:20] 2026-01-12 21:12:20,177 [wrapper] pilotpid: 20053
[2026-01-12 22:12:20] 2026-01-12 21:12:20,178 [wrapper] Pilot exit status: 0
[2026-01-12 22:12:20] 2026-01-12 21:12:20,183 [wrapper] pandaids: 6967339965
[2026-01-12 22:12:20] 2026-01-12 21:12:20,216 [wrapper] cleanup supervisor_pilot  8926 20054
[2026-01-12 22:12:20] 2026-01-12 21:12:20,217 [wrapper] Test setup, not cleaning
[2026-01-12 22:12:20] 2026-01-12 21:12:20,218 [wrapper] apfmon messages muted
[2026-01-12 22:12:20] 2026-01-12 21:12:20,220 [wrapper] ==== wrapper stdout END ====
[2026-01-12 22:12:20] 2026-01-12 21:12:20,221 [wrapper] ==== wrapper stderr END ====
[2026-01-12 22:12:20]  *** Error codes and diagnostics ***
[2026-01-12 22:12:20]     "exeErrorCode": 0,
[2026-01-12 22:12:20]     "exeErrorDiag": "",
[2026-01-12 22:12:20]     "pilotErrorCode": 0,
[2026-01-12 22:12:20]     "pilotErrorDiag": "",
[2026-01-12 22:12:20]  *** Listing of results directory ***
[2026-01-12 22:12:20] total 437088
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      5112 Jan 12 18:19 queuedata.json
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user    579449 Jan 12 18:19 pilot3.tar.gz
[2026-01-12 22:12:20] -rwx------ 1 mf493845 unix-user     36322 Jan 12 18:23 runpilot2-wrapper.sh
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       100 Jan 12 20:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 22:12:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 12 20:05 run_atlas
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       105 Jan 12 20:05 job.xml
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user 393778295 Jan 12 21:45 EVNT.47962006._000109.pool.root.1
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 12 21:45 start_atlas.sh
[2026-01-12 22:12:20] drwxrwx--x 2 mf493845 unix-user       100 Jan 12 21:45 shared
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user    592622 Jan 12 21:45 input.tar.gz
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      6389 Jan 12 21:45 init_data.xml
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user         0 Jan 12 21:45 boinc_setup_complete
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      8192 Jan 12 21:45 boinc_mmap_file
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user         0 Jan 12 21:45 boinc_lockfile
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      2890 Jan 12 21:45 pandaJob.out
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user    988547 Jan 12 21:45 agis_schedconf.cvmfs.json
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user   1516240 Jan 12 21:45 agis_ddmendpoints.agis.ALL.json
[2026-01-12 22:12:20] drwx------ 5 mf493845 unix-user       440 Jan 12 21:45 pilot3
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user  47087976 Jan 12 22:11 HITS.47962010._003266.pool.root.1
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      1024 Jan 12 22:11 memory_monitor_summary.json
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user   1129509 Jan 12 22:11 log.47962010._003266.job.log.tgz.1
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      8539 Jan 12 22:11 heartbeat.json
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       745 Jan 12 22:12 pilotlog.txt
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user        95 Jan 12 22:12 pilot_heartbeat.json
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user    282296 Jan 12 22:12 log.47962010._003266.job.log.1
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       353 Jan 12 22:12 output.list
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       620 Jan 12 22:12 runtime_log
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user   1433600 Jan 12 22:12 result.tar.gz
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user       642 Jan 12 22:12 WusNDmLoaz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjlnKDmybUsIm.diag
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user      9220 Jan 12 22:12 runtime_log.err
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user     22008 Jan 12 22:12 stderr.txt
[2026-01-12 22:12:20] HITS file was successfully produced:
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user 47087976 Jan 12 22:11 shared/HITS.pool.root.1
[2026-01-12 22:12:20]  *** Contents of shared directory: ***
[2026-01-12 22:12:20] total 432536
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user 393778295 Jan 12 21:45 ATLAS.root_0
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 12 21:45 start_atlas.sh
[2026-01-12 22:12:20] -rw-r--r-- 2 mf493845 unix-user    592622 Jan 12 21:45 input.tar.gz
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user  47087976 Jan 12 22:11 HITS.pool.root.1
[2026-01-12 22:12:20] -rw------- 1 mf493845 unix-user   1433600 Jan 12 22:12 result.tar.gz
22:12:21 (15201): run_atlas exited; CPU time 8640.543949
22:12:21 (15201): called boinc_finish(0)

</stderr_txt>
]]>

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