Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:17:05 (18961): wrapper (7.7.26015): starting
12:17:05 (18961): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 12:17:05] Arguments: --nthreads 12
[2026-01-12 12:17:05] Threads: 12
[2026-01-12 12:17:05] Checking for CVMFS
[2026-01-12 12:17:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 12:17:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 12:17:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 12:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 12:17:06] 2.11.2.0 3009 140917 101668 155061 3 1 19155554 20275200 1 130560 0 50415903 99.877 8474877 39599 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 12:17:06] CVMFS is ok
[2026-01-12 12:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 12:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 12:17:06] Further information can be found at the LHC@home message board.
[2026-01-12 12:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 12:17:06] Checking for apptainer binary...
[2026-01-12 12:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 12:17:06] Running /usr/bin/apptainer --version
[2026-01-12 12:17:06] apptainer version 1.3.2-1.el7
[2026-01-12 12:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 12:17:08] c-115-42.aglt2.org
[2026-01-12 12:17:08] apptainer works
[2026-01-12 12:17:08] Set ATHENA_PROC_NUMBER=12
[2026-01-12 12:17:08] Set ATHENA_CORE_NUMBER=12
[2026-01-12 12:17:08] Starting ATLAS job with PandaID=6967236103
[2026-01-12 12:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 13:39:36]  *** The last 200 lines of the pilot log: ***
[2026-01-12 13:39:36]  replicas=None
[2026-01-12 13:39:36]  scope=mc23_13p6TeV
[2026-01-12 13:39:36]  status=None
[2026-01-12 13:39:36]  status_code=0
[2026-01-12 13:39:36]  storage_token=
[2026-01-12 13:39:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6967236103/log.48188648._000190.job.log.tgz.1
[2026-01-12 13:39:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/ea/log.48188648._000190.job.log.tgz.1
[2026-01-12 13:39:36]  workdir=None
[2026-01-12 13:39:36] ]
[2026-01-12 13:39:36] 2026-01-12 18:38:41,403 | INFO     | transferring file log.48188648._000190.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6967236103/log.48188648._000190.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-12 13:39:36] 2026-01-12 18:38:41,403 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6967236103/log.48188648._000190.job.log.tgz.1 /tmp/boinchome/slots/0/log.48188648._000190.job
[2026-01-12 13:39:36] 2026-01-12 18:38:41,424 | INFO     | adding to output.list: log.48188648._000190.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/ea/log.48188648._000190.job.log.tg
[2026-01-12 13:39:36] 2026-01-12 18:38:41,425 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 13:39:36] 2026-01-12 18:38:41,426 | INFO     | summary of transferred files:
[2026-01-12 13:39:36] 2026-01-12 18:38:41,426 | INFO     |  -- lfn=log.48188648._000190.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 13:39:36] 2026-01-12 18:38:41,426 | INFO     | stage-out finished correctly
[2026-01-12 13:39:36] 2026-01-12 18:38:41,502 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 13:39:36] 2026-01-12 18:38:41,568 | INFO     | time since job start (4878s) is within the limit (349056.0s)
[2026-01-12 13:39:36] 2026-01-12 18:38:43,438 | INFO     | job 6967236103 has state=finished
[2026-01-12 13:39:36] 2026-01-12 18:38:43,439 | INFO     | preparing for final server update for job 6967236103 in state='finished'
[2026-01-12 13:39:36] 2026-01-12 18:38:43,439 | INFO     | this job has now completed (state=finished)
[2026-01-12 13:39:36] 2026-01-12 18:38:43,439 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 13:39:36] 2026-01-12 18:38:43,440 | INFO     | log transfer has been attempted: DONE
[2026-01-12 13:39:36] 2026-01-12 18:38:43,440 | INFO     | job 6967236103 has finished - writing final server update
[2026-01-12 13:39:36] 2026-01-12 18:38:43,440 | INFO     | total number of processed events: 400 (read)
[2026-01-12 13:39:36] 2026-01-12 18:38:43,441 | INFO     | executing command: lscpu
[2026-01-12 13:39:36] 2026-01-12 18:38:43,467 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 13:39:36] 2026-01-12 18:38:43,577 | INFO     | time since job start (4880s) is within the limit (349056.0s)
[2026-01-12 13:39:36] 2026-01-12 18:38:45,130 | WARNING  | process 29467 can no longer be monitored (due to stat problems) - aborting
[2026-01-12 13:39:36] 2026-01-12 18:38:45,130 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967236103/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:39:36] 2026-01-12 18:38:45,216 | INFO     | number of running child processes to parent process 29467: 1
[2026-01-12 13:39:36] 2026-01-12 18:38:45,216 | INFO     | maximum number of monitored processes: 6
[2026-01-12 13:39:36] 2026-01-12 18:38:45,583 | INFO     | time since job start (4882s) is within the limit (349056.0s)
[2026-01-12 13:39:36] 2026-01-12 18:38:46,700 | INFO     | PID=23098 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 13:39:36] 2026-01-12 18:38:47,701 | INFO     | time since job start (4884s) is within the limit (349056.0s)
[2026-01-12 13:39:36] 2026-01-12 18:38:47,719 | INFO     | monitor loop #364: job 0:6967236103 is in state 'finished'
[2026-01-12 13:39:36] 2026-01-12 18:38:47,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 13:39:36] 2026-01-12 18:38:47,958 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-12 13:39:36] 2026-01-12 18:38:47,962 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-12 13:39:36] 2026-01-12 18:38:47,965 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6967236103/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 13:39:36] 2026-01-12 18:38:47,965 | INFO     | extracted standard info from prmon json
[2026-01-12 13:39:36] 2026-01-12 18:38:47,966 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 13:39:36] 2026-01-12 18:38:47,966 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 13:39:36] 2026-01-12 18:38:47,966 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 13:39:36] 2026-01-12 18:38:47,966 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 13:39:36] 2026-01-12 18:38:47,968 | INFO     | fitting pss+swap vs Time
[2026-01-12 13:39:36] 2026-01-12 18:38:47,968 | INFO     | sum of square deviations: 120605052.0
[2026-01-12 13:39:36] 2026-01-12 18:38:47,968 | INFO     | sum of deviations: -7344711588.000002
[2026-01-12 13:39:36] 2026-01-12 18:38:47,968 | INFO     | mean x: 1768240773.0
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | mean y: 2963652.479452055
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | intersect: 107686831620.35844
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | chi2: 0.07548666923067128
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | current memory leak: -60.90 B/s (using 73 data points, chi2=0.08)
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | could have reported an average CPU frequency of 2145 MHz (6 samples)
[2026-01-12 13:39:36] 2026-01-12 18:38:47,969 | INFO     | ..............................
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . Timing measurements:
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . get job = 0 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . initial setup = 2 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . payload setup = 7 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . stage-in = 0 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . payload execution = 4849 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . stage-out = 0 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | . log creation = 0 s
[2026-01-12 13:39:36] 2026-01-12 18:38:47,970 | INFO     | ..............................
[2026-01-12 13:39:36] 2026-01-12 18:38:48,057 | INFO     | 
[2026-01-12 13:39:36] 2026-01-12 18:38:48,058 | INFO     | job summary report
[2026-01-12 13:39:36] 2026-01-12 18:38:48,058 | INFO     | --------------------------------------------------
[2026-01-12 13:39:36] 2026-01-12 18:38:48,058 | INFO     | PanDA job id: 6967236103
[2026-01-12 13:39:36] 2026-01-12 18:38:48,058 | INFO     | task id: 48188648
[2026-01-12 13:39:36] 2026-01-12 18:38:48,058 | INFO     | errors: (none)
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | pilot state: finished 
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | transexitcode: 0
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | exeerrorcode: 0
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | exeerrordiag: 
[2026-01-12 13:39:36] 2026-01-12 18:38:48,059 | INFO     | exitcode: 0
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | exitmsg: OK
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | cpuconsumptiontime: 53683 s
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | nevents: 400
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | neventsw: 0
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | pid: 29467
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | pgrp: 29467
[2026-01-12 13:39:36] 2026-01-12 18:38:48,060 | INFO     | corecount: 12
[2026-01-12 13:39:36] 2026-01-12 18:38:48,061 | INFO     | event service: False
[2026-01-12 13:39:36] 2026-01-12 18:38:48,061 | INFO     | sizes: {0: 2283956, 1: 2284155, 6: 2284417, 11: 2284445, 4860: 2310672, 4861: 2310671, 4862: 2319909, 4868: 2320047}
[2026-01-12 13:39:36] 2026-01-12 18:38:48,061 | INFO     | --------------------------------------------------
[2026-01-12 13:39:36] 2026-01-12 18:38:48,061 | INFO     | 
[2026-01-12 13:39:36] 2026-01-12 18:38:48,061 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 13:39:36] 2026-01-12 18:38:48,085 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,085 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,087 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | job 6967236103 has completed (purged errors)
[2026-01-12 13:39:36] 2026-01-12 18:38:48,088 | INFO     | overall cleanup function is called
[2026-01-12 13:39:36] 2026-01-12 18:38:49,092 | INFO     | --- collectZombieJob: --- 10, [29467]
[2026-01-12 13:39:36] 2026-01-12 18:38:49,092 | INFO     | zombie collector waiting for pid 29467
[2026-01-12 13:39:36] 2026-01-12 18:38:49,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 13:39:36] 2026-01-12 18:38:49,092 | INFO     | collected zombie processes
[2026-01-12 13:39:36] 2026-01-12 18:38:49,093 | INFO     | will attempt to kill all subprocesses of pid=29467
[2026-01-12 13:39:36] 2026-01-12 18:38:49,179 | INFO     | process IDs to be killed: [29467] (in reverse order)
[2026-01-12 13:39:36] 2026-01-12 18:38:49,227 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 13:39:36] 2026-01-12 18:38:49,227 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 13:39:36] 2026-01-12 18:38:49,231 | INFO     | did not find any defunct processes belonging to 29467
[2026-01-12 13:39:36] 2026-01-12 18:38:49,235 | INFO     | did not find any defunct processes belonging to 29467
[2026-01-12 13:39:36] 2026-01-12 18:38:49,235 | INFO     | ready for new job
[2026-01-12 13:39:36] 2026-01-12 18:38:49,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 13:39:36] 2026-01-12 18:38:49,236 | INFO     | ***************************************
[2026-01-12 13:39:36] 2026-01-12 18:38:49,237 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 13:39:36] 2026-01-12 18:38:49,237 | INFO     | ***************************************
[2026-01-12 13:39:36] 2026-01-12 18:38:49,237 | INFO     | 
[2026-01-12 13:39:36] 2026-01-12 18:38:49,237 | INFO     | architecture information:
[2026-01-12 13:39:36] 2026-01-12 18:38:49,238 | INFO     | executing command: cat /etc/os-release
[2026-01-12 13:39:36] 2026-01-12 18:38:49,251 | INFO     | cat /etc/os-release:
[2026-01-12 13:39:36] NAME="CentOS Linux"
[2026-01-12 13:39:36] VERSION="7 (Core)"
[2026-01-12 13:39:36] ID="centos"
[2026-01-12 13:39:36] ID_LIKE="rhel fedora"
[2026-01-12 13:39:36] VERSION_ID="7"
[2026-01-12 13:39:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 13:39:36] ANSI_COLOR="0;31"
[2026-01-12 13:39:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 13:39:36] HOME_URL="https://www.centos.org/"
[2026-01-12 13:39:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 13:39:36] 
[2026-01-12 13:39:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 13:39:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 13:39:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 13:39:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 13:39:36] 
[2026-01-12 13:39:36] 2026-01-12 18:38:49,251 | INFO     | ***************************************
[2026-01-12 13:39:36] 2026-01-12 18:38:49,754 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 13:39:36] 2026-01-12 18:38:49,771 | INFO     | sufficient remaining disk space (18335399936 B)
[2026-01-12 13:39:36] 2026-01-12 18:38:49,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 13:39:36] 2026-01-12 18:38:49,772 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 13:39:36] 2026-01-12 18:38:49,772 | INFO     | update_server=False
[2026-01-12 13:39:36] 2026-01-12 18:38:49,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 13:39:36] 2026-01-12 18:38:49,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:39:36] 2026-01-12 18:38:49,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 13:39:36] 2026-01-12 18:38:49,884 | INFO     | all job control threads have been joined
[2026-01-12 13:39:36] 2026-01-12 18:38:50,222 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 13:39:36] 2026-01-12 18:38:50,222 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 13:39:36] 2026-01-12 18:38:50,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 13:39:36] 2026-01-12 18:38:50,223 | INFO     | will abort loop
[2026-01-12 13:39:36] 2026-01-12 18:38:50,404 | INFO     | all data control threads have been joined
[2026-01-12 13:39:36] 2026-01-12 18:38:50,777 | INFO     | [job] retrieve thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:50,778 | INFO     | [job] queue monitor thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:50,889 | INFO     | [job] control thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:50,996 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,010 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,111 | INFO     | all payload control threads have been joined
[2026-01-12 13:39:36] 2026-01-12 18:38:51,132 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,228 | INFO     | [job] job monitor thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,264 | INFO     | [payload] validate_post thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,409 | INFO     | [data] control thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,423 | INFO     | [data] copytool_in thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,510 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:51,778 | INFO     | [data] copytool_out thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:52,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 13:39:36] 2026-01-12 18:38:52,117 | INFO     | [payload] control thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:52,138 | INFO     | [job] validate thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:52,299 | INFO     | [payload] failed_post thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:38:56,088 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 13:39:36] 2026-01-12 18:39:20,886 | INFO     | PID=23098 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 13:39:36] 2026-01-12 18:39:20,886 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 13:39:36] 2026-01-12 18:39:20,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 13:39:36] 2026-01-12 18:39:20,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 13:39:36] 2026-01-12 18:39:31,088 | INFO     | [monitor] cgroup control has ended
[2026-01-12 13:39:36] 2026-01-12 18:39:31,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154669483840)>', '<ExcThread(monitor, started 140153490233088)>']
[2026-01-12 13:39:36] 2026-01-12 18:39:31,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 13:39:36] 2026-01-12 18:39:31,939 | INFO     | [monitor] control thread has ended
[2026-01-12 13:39:36] 2026-01-12 18:39:36,149 | INFO     | all workflow threads have been joined
[2026-01-12 13:39:36] 2026-01-12 18:39:36,149 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 13:39:36] 2026-01-12 18:39:36,156 | INFO     | traces error code: 0
[2026-01-12 13:39:36] 2026-01-12 18:39:36,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 13:39:36] 2026-01-12 18:39:36,239 [wrapper] ==== pilot stdout END ====
[2026-01-12 13:39:36] 2026-01-12 18:39:36,242 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 13:39:36] 2026-01-12 18:39:36,246 [wrapper] pilotpid: 23098
[2026-01-12 13:39:36] 2026-01-12 18:39:36,250 [wrapper] Pilot exit status: 0
[2026-01-12 13:39:36] 2026-01-12 18:39:36,265 [wrapper] pandaids: 6967236103
[2026-01-12 13:39:36] 2026-01-12 18:39:36,311 [wrapper] cleanup supervisor_pilot  2499 23099
[2026-01-12 13:39:36] 2026-01-12 18:39:36,315 [wrapper] Test setup, not cleaning
[2026-01-12 13:39:36] 2026-01-12 18:39:36,318 [wrapper] apfmon messages muted
[2026-01-12 13:39:36] 2026-01-12 18:39:36,322 [wrapper] ==== wrapper stdout END ====
[2026-01-12 13:39:36] 2026-01-12 18:39:36,326 [wrapper] ==== wrapper stderr END ====
[2026-01-12 13:39:36]  *** Error codes and diagnostics ***
[2026-01-12 13:39:36]     "exeErrorCode": 0,
[2026-01-12 13:39:36]     "exeErrorDiag": "",
[2026-01-12 13:39:36]     "pilotErrorCode": 0,
[2026-01-12 13:39:36]     "pilotErrorDiag": "",
[2026-01-12 13:39:36]  *** Listing of results directory ***
[2026-01-12 13:39:36] total 552072
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas    579449 Jan 12 11:03 pilot3.tar.gz
[2026-01-12 13:39:36] -rwx------ 1 boincer umatlas     36322 Jan 12 11:43 runpilot2-wrapper.sh
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas      5112 Jan 12 11:43 queuedata.json
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas       100 Jan 12 12:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 13:39:36] -rwxr-xr-x 1 boincer umatlas      7986 Jan 12 12:17 run_atlas
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas       105 Jan 12 12:17 job.xml
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas 309805527 Jan 12 12:17 EVNT.48188646._000006.pool.root.1
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 12:17 start_atlas.sh
[2026-01-12 13:39:36] drwxrwx--x 2 boincer umatlas      4096 Jan 12 12:17 shared
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas    592409 Jan 12 12:17 input.tar.gz
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas         0 Jan 12 12:17 boinc_lockfile
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas      2633 Jan 12 12:17 pandaJob.out
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas        57 Jan 12 12:17 setup.sh.local
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas    988539 Jan 12 12:17 agis_schedconf.cvmfs.json
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas   1516240 Jan 12 12:17 agis_ddmendpoints.agis.ALL.json
[2026-01-12 13:39:36] drwx------ 5 boincer umatlas      4096 Jan 12 12:17 pilot3
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas      5954 Jan 12 13:36 init_data.xml
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas 249344049 Jan 12 13:38 HITS.48188648._000190.pool.root.1
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas       529 Jan 12 13:38 boinc_task_state.xml
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas        95 Jan 12 13:38 pilot_heartbeat.json
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas      1059 Jan 12 13:38 memory_monitor_summary.json
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas    424547 Jan 12 13:38 log.48188648._000190.job.log.tgz.1
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas      7843 Jan 12 13:38 heartbeat.json
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas        27 Jan 12 13:39 wrapper_checkpoint.txt
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas      8192 Jan 12 13:39 boinc_mmap_file
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas      4932 Jan 12 13:39 pilotlog.txt
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas    704921 Jan 12 13:39 log.48188648._000190.job.log.1
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas       357 Jan 12 13:39 output.list
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas       620 Jan 12 13:39 runtime_log
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas   1146880 Jan 12 13:39 result.tar.gz
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas      9344 Jan 12 13:39 runtime_log.err
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas       659 Jan 12 13:39 2L8KDmJCaz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNjnKDm35Izrm.diag
[2026-01-12 13:39:36] -rw-r--r-- 1 boincer umatlas     21997 Jan 12 13:39 stderr.txt
[2026-01-12 13:39:36] HITS file was successfully produced:
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas 249344049 Jan 12 13:38 shared/HITS.pool.root.1
[2026-01-12 13:39:36]  *** Contents of shared directory: ***
[2026-01-12 13:39:36] total 547768
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas 309805527 Jan 12 12:17 ATLAS.root_0
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 12 12:17 start_atlas.sh
[2026-01-12 13:39:36] -rw-r--r-- 2 boincer umatlas    592409 Jan 12 12:17 input.tar.gz
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas 249344049 Jan 12 13:38 HITS.pool.root.1
[2026-01-12 13:39:36] -rw------- 1 boincer umatlas   1146880 Jan 12 13:39 result.tar.gz
13:39:38 (18961): run_atlas exited; CPU time 53642.903054
13:39:38 (18961): called boinc_finish(0)

</stderr_txt>
]]>

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