Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:31:46 (922083): wrapper (7.7.26015): starting
13:31:46 (922083): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 13:31:46] Arguments: --nthreads 8
[2026-01-12 13:31:46] Threads: 8
[2026-01-12 13:31:46] Checking for CVMFS
[2026-01-12 13:31:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:31:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:31:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:31:48] 2.13.3.0 12977 98091 605352 155062 0 192 25356428 32935936 22552 16776704 0 425614786 99.549 515582514 33683 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 13:31:48] CVMFS is ok
[2026-01-12 13:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 13:31:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 13:31:48] Further information can be found at the LHC@home message board.
[2026-01-12 13:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:31:48] Checking for apptainer binary...
[2026-01-12 13:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:31:48] Running /usr/bin/apptainer --version
[2026-01-12 13:31:48] apptainer version 1.4.5-2.el9
[2026-01-12 13:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:31:49] c6-12-29-1.aglt2.org
[2026-01-12 13:31:49] apptainer works
[2026-01-12 13:31:49] Set ATHENA_PROC_NUMBER=8
[2026-01-12 13:31:49] Set ATHENA_CORE_NUMBER=8
[2026-01-12 13:31:49] Starting ATLAS job with PandaID=6967236143
[2026-01-12 13:31:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 02:47:30]  *** The last 200 lines of the pilot log: ***
[2026-01-13 02:47:30] 2026-01-13 07:46:37,633 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-13 02:47:30] 2026-01-13 07:46:37,649 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2578.00746875
[2026-01-13 02:47:30] 2026-01-13 07:46:37,684 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6967236143/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 02:47:30] 2026-01-13 07:46:37,689 | INFO     | extracted standard info from prmon json
[2026-01-13 02:47:30] 2026-01-13 07:46:37,689 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 02:47:30] 2026-01-13 07:46:37,689 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 02:47:30] 2026-01-13 07:46:37,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 02:47:30] 2026-01-13 07:46:37,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 02:47:30] 2026-01-13 07:46:37,732 | INFO     | fitting pss+swap vs Time
[2026-01-13 02:47:30] 2026-01-13 07:46:37,733 | INFO     | sum of square deviations: 146018859106.00644
[2026-01-13 02:47:30] 2026-01-13 07:46:37,750 | INFO     | sum of deviations: 16697867881.082413
[2026-01-13 02:47:30] 2026-01-13 07:46:37,774 | INFO     | mean x: 1768266607.7879179
[2026-01-13 02:47:30] 2026-01-13 07:46:37,774 | INFO     | mean y: 2575040.2853470435
[2026-01-13 02:47:30] 2026-01-13 07:46:37,774 | INFO     | intersect: -199633649.57941213
[2026-01-13 02:47:30] 2026-01-13 07:46:37,775 | INFO     | chi2: 7.48414151014739
[2026-01-13 02:47:30] 2026-01-13 07:46:37,776 | INFO     | sum of square deviations: 143221656373.0892
[2026-01-13 02:47:30] 2026-01-13 07:46:37,757 | INFO     | time since job start (47622s) is within the limit (349056.0s)
[2026-01-13 02:47:30] 2026-01-13 07:46:37,835 | INFO     | sum of deviations: 292214405213.10345
[2026-01-13 02:47:30] 2026-01-13 07:46:37,835 | INFO     | mean x: 1768266455.2897801
[2026-01-13 02:47:30] 2026-01-13 07:46:37,835 | INFO     | mean y: 2590059.785252264
[2026-01-13 02:47:30] 2026-01-13 07:46:37,835 | INFO     | intersect: -3605194849.1167946
[2026-01-13 02:47:30] 2026-01-13 07:46:37,836 | INFO     | chi2: 3.3820685441565144
[2026-01-13 02:47:30] 2026-01-13 07:46:37,837 | INFO     | current chi2=3.3820685441565144 (change=54.810200480964596 %)
[2026-01-13 02:47:30] 2026-01-13 07:46:37,838 | INFO     | sum of square deviations: 140460360527.2487
[2026-01-13 02:47:30] 2026-01-13 07:46:37,879 | INFO     | sum of deviations: 290210196467.5131
[2026-01-13 02:47:30] 2026-01-13 07:46:37,880 | INFO     | mean x: 1768266302.7903645
[2026-01-13 02:47:30] 2026-01-13 07:46:37,880 | INFO     | mean y: 2589949.0963541665
[2026-01-13 02:47:30] 2026-01-13 07:46:37,880 | INFO     | intersect: -3650888578.3215094
[2026-01-13 02:47:30] 2026-01-13 07:46:37,881 | INFO     | chi2: 3.3823462280317025
[2026-01-13 02:47:30] 2026-01-13 07:46:37,881 | INFO     | current chi2=3.3823462280317025 (change=-0.008210474494016247 %)
[2026-01-13 02:47:30] 2026-01-13 07:46:37,896 | INFO     | right removable region: 767
[2026-01-13 02:47:30] 2026-01-13 07:46:37,898 | INFO     | sum of square deviations: 143221519733.08917
[2026-01-13 02:47:30] 2026-01-13 07:46:37,948 | INFO     | sum of deviations: -206830813868.59247
[2026-01-13 02:47:30] 2026-01-13 07:46:37,970 | INFO     | mean x: 1768266760.2897801
[2026-01-13 02:47:30] 2026-01-13 07:46:37,971 | INFO     | mean y: 2587216.279430789
[2026-01-13 02:47:30] 2026-01-13 07:46:37,971 | INFO     | intersect: 2556198250.774114
[2026-01-13 02:47:30] 2026-01-13 07:46:37,972 | INFO     | chi2: 4.657203298812531
[2026-01-13 02:47:30] 2026-01-13 07:46:37,972 | INFO     | current chi2=4.657203298812531 (change=37.77237786728042 %)
[2026-01-13 02:47:30] 2026-01-13 07:46:37,973 | INFO     | sum of square deviations: 140460181919.2486
[2026-01-13 02:47:30] 2026-01-13 07:46:38,010 | INFO     | sum of deviations: -268178664102.3918
[2026-01-13 02:47:30] 2026-01-13 07:46:38,027 | INFO     | mean x: 1768266912.7903645
[2026-01-13 02:47:30] 2026-01-13 07:46:38,027 | INFO     | mean y: 2590599.6497395835
[2026-01-13 02:47:30] 2026-01-13 07:46:38,027 | INFO     | intersect: 3378717926.0489573
[2026-01-13 02:47:30] 2026-01-13 07:46:38,028 | INFO     | chi2: 4.40443170518839
[2026-01-13 02:47:30] 2026-01-13 07:46:38,028 | INFO     | current chi2=4.40443170518839 (change=5.4275404659399635 %)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,028 | INFO     | left removable region: 20
[2026-01-13 02:47:30] 2026-01-13 07:46:38,029 | INFO     | sum of square deviations: 129250035809.61707
[2026-01-13 02:47:30] 2026-01-13 07:46:38,092 | INFO     | sum of deviations: 16100876474.698797
[2026-01-13 02:47:30] 2026-01-13 07:46:38,105 | INFO     | mean x: 1768266882.29585
[2026-01-13 02:47:30] 2026-01-13 07:46:38,106 | INFO     | mean y: 2605272.0963855423
[2026-01-13 02:47:30] 2026-01-13 07:46:38,106 | INFO     | intersect: -217670462.97639218
[2026-01-13 02:47:30] 2026-01-13 07:46:38,107 | INFO     | chi2: 0.18063319669815822
[2026-01-13 02:47:30] 2026-01-13 07:46:38,107 | INFO     | current memory leak: 0.12 B/s (using 747 data points, chi2=0.18)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,108 | INFO     | could have reported an average CPU frequency of 2660 MHz (29 samples)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,108 | INFO     | ..............................
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . Timing measurements:
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . get job = 0 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . initial setup = 6 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . payload setup = 44 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . stage-in = 0 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . payload execution = 47472 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . stage-out = 6 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,109 | INFO     | . log creation = 1 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,124 | INFO     | ..............................
[2026-01-13 02:47:30] 2026-01-13 07:46:38,262 | INFO     | 
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | job summary report
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | --------------------------------------------------
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | PanDA job id: 6967236143
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | task id: 48188648
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | errors: (none)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | pilot state: finished 
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | transexitcode: 0
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | exeerrorcode: 0
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | exeerrordiag: 
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | exitcode: 0
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | exitmsg: OK
[2026-01-13 02:47:30] 2026-01-13 07:46:38,263 | INFO     | cpuconsumptiontime: 55346 s
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | nevents: 400
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | neventsw: 0
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | pid: 943653
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | pgrp: 943653
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | corecount: 8
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | event service: False
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | sizes: {0: 2283299, 1: 2283984, 2: 2284183, 13: 2284183, 25: 2284239, 29: 2284529, 36: 2284685, 47520: 2330132, 47521: 2330131, 47528: 2339241, 47561: 2339379}
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | --------------------------------------------------
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | 
[2026-01-13 02:47:30] 2026-01-13 07:46:38,264 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-13 02:47:30] 2026-01-13 07:46:38,290 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,290 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,290 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,290 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | job 6967236143 has completed (purged errors)
[2026-01-13 02:47:30] 2026-01-13 07:46:38,292 | INFO     | overall cleanup function is called
[2026-01-13 02:47:30] 2026-01-13 07:46:39,355 | INFO     | --- collectZombieJob: --- 10, [943653]
[2026-01-13 02:47:30] 2026-01-13 07:46:39,358 | INFO     | zombie collector waiting for pid 943653
[2026-01-13 02:47:30] 2026-01-13 07:46:39,359 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 02:47:30] 2026-01-13 07:46:39,359 | INFO     | collected zombie processes
[2026-01-13 02:47:30] 2026-01-13 07:46:39,359 | INFO     | will attempt to kill all subprocesses of pid=943653
[2026-01-13 02:47:30] 2026-01-13 07:46:43,574 | INFO     | process IDs to be killed: [943653] (in reverse order)
[2026-01-13 02:47:30] 2026-01-13 07:46:43,942 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 02:47:30] 2026-01-13 07:46:43,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 02:47:30] 2026-01-13 07:46:44,052 | INFO     | did not find any defunct processes belonging to 943653
[2026-01-13 02:47:30] 2026-01-13 07:46:44,121 | INFO     | did not find any defunct processes belonging to 943653
[2026-01-13 02:47:30] 2026-01-13 07:46:44,121 | INFO     | ready for new job
[2026-01-13 02:47:30] 2026-01-13 07:46:44,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 02:47:30] 2026-01-13 07:46:44,132 | INFO     | ***************************************
[2026-01-13 02:47:30] 2026-01-13 07:46:44,133 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 02:47:30] 2026-01-13 07:46:44,133 | INFO     | ***************************************
[2026-01-13 02:47:30] 2026-01-13 07:46:44,133 | INFO     | 
[2026-01-13 02:47:30] 2026-01-13 07:46:44,147 | INFO     | architecture information:
[2026-01-13 02:47:30] 2026-01-13 07:46:44,152 | INFO     | executing command: cat /etc/os-release
[2026-01-13 02:47:30] 2026-01-13 07:46:44,205 | INFO     | PID=927316 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 02:47:30] 2026-01-13 07:46:44,206 | INFO     | .. there are 25 such processes running
[2026-01-13 02:47:30] 2026-01-13 07:46:44,226 | INFO     | cat /etc/os-release:
[2026-01-13 02:47:30] NAME="CentOS Linux"
[2026-01-13 02:47:30] VERSION="7 (Core)"
[2026-01-13 02:47:30] ID="centos"
[2026-01-13 02:47:30] ID_LIKE="rhel fedora"
[2026-01-13 02:47:30] VERSION_ID="7"
[2026-01-13 02:47:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 02:47:30] ANSI_COLOR="0;31"
[2026-01-13 02:47:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 02:47:30] HOME_URL="https://www.centos.org/"
[2026-01-13 02:47:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 02:47:30] 
[2026-01-13 02:47:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 02:47:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 02:47:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 02:47:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 02:47:30] 
[2026-01-13 02:47:30] 2026-01-13 07:46:44,226 | INFO     | ***************************************
[2026-01-13 02:47:30] 2026-01-13 07:46:44,730 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-13 02:47:30] 2026-01-13 07:46:44,777 | INFO     | sufficient remaining disk space (89725599744 B)
[2026-01-13 02:47:30] 2026-01-13 07:46:44,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 02:47:30] 2026-01-13 07:46:44,778 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 02:47:30] 2026-01-13 07:46:44,778 | INFO     | update_server=False
[2026-01-13 02:47:30] 2026-01-13 07:46:44,778 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 02:47:30] 2026-01-13 07:46:44,778 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:47:30] 2026-01-13 07:46:44,783 | INFO     | aborting loop
[2026-01-13 02:47:30] 2026-01-13 07:46:44,783 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-13 02:47:30] 2026-01-13 07:46:44,783 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 02:47:30] 2026-01-13 07:46:44,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 02:47:30] 2026-01-13 07:46:44,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 02:47:30] 2026-01-13 07:46:44,892 | INFO     | all job control threads have been joined
[2026-01-13 02:47:30] 2026-01-13 07:46:45,561 | INFO     | all data control threads have been joined
[2026-01-13 02:47:30] 2026-01-13 07:46:45,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 02:47:30] 2026-01-13 07:46:45,784 | INFO     | [job] retrieve thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:45,789 | INFO     | [job] job monitor thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:45,844 | INFO     | [payload] failed_post thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:45,862 | INFO     | [payload] validate_post thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:45,887 | INFO     | all payload control threads have been joined
[2026-01-13 02:47:30] 2026-01-13 07:46:45,898 | INFO     | [job] control thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,197 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,223 | INFO     | [job] validate thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,237 | INFO     | [data] copytool_in thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,281 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,567 | INFO     | [data] control thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:46,893 | INFO     | [payload] control thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:47,129 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:47,152 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:47,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 02:47:30] 2026-01-13 07:46:47,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:47:30] 2026-01-13 07:46:47,665 | INFO     | [data] copytool_out thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:48,392 | INFO     | [job] queue monitor thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:46:51,401 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 02:47:30] 2026-01-13 07:47:20,920 | INFO     | [monitor] cgroup control has ended
[2026-01-13 02:47:30] 2026-01-13 07:47:22,489 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657750873920)>', '<ExcThread(monitor, started 140657251297024)>']
[2026-01-13 02:47:30] 2026-01-13 07:47:23,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 02:47:30] 2026-01-13 07:47:23,088 | INFO     | [monitor] control thread has ended
[2026-01-13 02:47:30] 2026-01-13 07:47:27,515 | INFO     | all workflow threads have been joined
[2026-01-13 02:47:30] 2026-01-13 07:47:27,516 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 02:47:30] 2026-01-13 07:47:27,516 | INFO     | traces error code: 0
[2026-01-13 02:47:30] 2026-01-13 07:47:27,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 02:47:30] 2026-01-13 07:47:28,942 [wrapper] ==== pilot stdout END ====
[2026-01-13 02:47:30] 2026-01-13 07:47:29,015 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 02:47:30] 2026-01-13 07:47:29,040 [wrapper] pilotpid: 927316
[2026-01-13 02:47:30] 2026-01-13 07:47:29,055 [wrapper] Pilot exit status: 0
[2026-01-13 02:47:30] 2026-01-13 07:47:29,267 [wrapper] pandaids: 6967236143
[2026-01-13 02:47:30] 2026-01-13 07:47:29,613 [wrapper] cleanup supervisor_pilot 2625890 927317
[2026-01-13 02:47:30] 2026-01-13 07:47:29,631 [wrapper] Test setup, not cleaning
[2026-01-13 02:47:30] 2026-01-13 07:47:29,678 [wrapper] apfmon messages muted
[2026-01-13 02:47:30] 2026-01-13 07:47:29,694 [wrapper] ==== wrapper stdout END ====
[2026-01-13 02:47:30] 2026-01-13 07:47:29,705 [wrapper] ==== wrapper stderr END ====
[2026-01-13 02:47:30]  *** Error codes and diagnostics ***
[2026-01-13 02:47:30]     "exeErrorCode": 0,
[2026-01-13 02:47:30]     "exeErrorDiag": "",
[2026-01-13 02:47:30]     "pilotErrorCode": 0,
[2026-01-13 02:47:30]     "pilotErrorDiag": "",
[2026-01-13 02:47:30]  *** Listing of results directory ***
[2026-01-13 02:47:30] total 564736
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 11:03 pilot3.tar.gz
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 11:43 queuedata.json
[2026-01-13 02:47:30] -rwx------. 1 boincer umatlas     36322 Jan 12 11:45 runpilot2-wrapper.sh
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas       100 Jan 12 13:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 02:47:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 13:31 run_atlas
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas       105 Jan 12 13:31 job.xml
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas 308738006 Jan 12 13:31 EVNT.48188646._000008.pool.root.1
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 13:31 start_atlas.sh
[2026-01-13 02:47:30] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 13:31 shared
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas    592409 Jan 12 13:31 input.tar.gz
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas         0 Jan 12 13:31 boinc_lockfile
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas      2633 Jan 12 13:31 pandaJob.out
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas        57 Jan 12 13:31 setup.sh.local
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas    988539 Jan 12 13:32 agis_schedconf.cvmfs.json
[2026-01-13 02:47:30] drwx------. 5 boincer umatlas      4096 Jan 12 13:32 pilot3
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas 252591990 Jan 13 02:40 HITS.48188648._000230.pool.root.1
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas       531 Jan 13 02:40 boinc_task_state.xml
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas      1042 Jan 13 02:45 memory_monitor_summary.json
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas   1516240 Jan 13 02:46 agis_ddmendpoints.agis.ALL.json
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas    886573 Jan 13 02:46 log.48188648._000230.job.log.tgz.1
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas        95 Jan 13 02:46 pilot_heartbeat.json
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas      7821 Jan 13 02:46 heartbeat.json
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas      6879 Jan 13 02:47 init_data.xml
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas        28 Jan 13 02:47 wrapper_checkpoint.txt
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas      8192 Jan 13 02:47 boinc_mmap_file
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas      4946 Jan 13 02:47 pilotlog.txt
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas   5633567 Jan 13 02:47 log.48188648._000230.job.log.1
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas       357 Jan 13 02:47 output.list
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas       620 Jan 13 02:47 runtime_log
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas   6543360 Jan 13 02:47 result.tar.gz
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas       661 Jan 13 02:47 RgXLDmWDaz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdknKDm3QBg0n.diag
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas      9353 Jan 13 02:47 runtime_log.err
[2026-01-13 02:47:30] -rw-r--r--. 1 boincer umatlas     21239 Jan 13 02:47 stderr.txt
[2026-01-13 02:47:30] HITS file was successfully produced:
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas 252591990 Jan 13 02:40 shared/HITS.pool.root.1
[2026-01-13 02:47:30]  *** Contents of shared directory: ***
[2026-01-13 02:47:30] total 555168
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas 308738006 Jan 12 13:31 ATLAS.root_0
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 13:31 start_atlas.sh
[2026-01-13 02:47:30] -rw-r--r--. 2 boincer umatlas    592409 Jan 12 13:31 input.tar.gz
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas 252591990 Jan 13 02:40 HITS.pool.root.1
[2026-01-13 02:47:30] -rw-------. 1 boincer umatlas   6543360 Jan 13 02:47 result.tar.gz
02:47:31 (922083): run_atlas exited; CPU time 57560.501241
02:47:31 (922083): called boinc_finish(0)

</stderr_txt>
]]>

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