Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:06:19 (5439): wrapper (7.7.26015): starting
21:06:19 (5439): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 21:06:19] Arguments: --nthreads 8
[2026-01-12 21:06:19] Threads: 8
[2026-01-12 21:06:19] Checking for CVMFS
[2026-01-12 21:06:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 21:06:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 21:06:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 21:06:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 21:06:23] 2.11.2.0 7648 40175 96292 155064 2 126 20393082 25165825 1088 130560 0 19116874 99.854 9919631 2788 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 21:06:23] CVMFS is ok
[2026-01-12 21:06:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 21:06:23] Checking for apptainer binary...
[2026-01-12 21:06:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 21:06:23] Running /usr/bin/apptainer --version
[2026-01-12 21:06:23] apptainer version 1.3.2-1.el7
[2026-01-12 21:06:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 21:06:37] cg-vwn480.simple-grid.lan
[2026-01-12 21:06:37] apptainer works
[2026-01-12 21:06:38] Set ATHENA_PROC_NUMBER=8
[2026-01-12 21:06:38] Set ATHENA_CORE_NUMBER=8
[2026-01-12 21:06:38] Starting ATLAS job with PandaID=6967163136
[2026-01-12 21:06:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 02:22:53]  *** The last 200 lines of the pilot log: ***
[2026-01-13 02:22:53] 2026-01-13 01:21:46,489 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-13 02:22:53] 2026-01-13 01:21:46,491 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6967163136/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,492 | INFO     | extracted standard info from prmon json
[2026-01-13 02:22:53] 2026-01-13 01:21:46,492 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 02:22:53] 2026-01-13 01:21:46,492 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 02:22:53] 2026-01-13 01:21:46,492 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-13 02:22:53] 2026-01-13 01:21:46,492 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-13 02:22:53] 2026-01-13 01:21:46,507 | INFO     | fitting pss+swap vs Time
[2026-01-13 02:22:53] 2026-01-13 01:21:46,508 | INFO     | sum of square deviations: 7960484140.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,511 | INFO     | sum of deviations: 90113887179.00002
[2026-01-13 02:22:53] 2026-01-13 01:21:46,511 | INFO     | mean x: 1768258196.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,511 | INFO     | mean y: 2513778.3762711864
[2026-01-13 02:22:53] 2026-01-13 01:21:46,511 | INFO     | intersect: -20014437047.14049
[2026-01-13 02:22:53] 2026-01-13 01:21:46,512 | INFO     | chi2: 7.831841125126994
[2026-01-13 02:22:53] 2026-01-13 01:21:46,512 | INFO     | sum of square deviations: 7562532492.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,515 | INFO     | sum of deviations: 108269677994.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,516 | INFO     | mean x: 1768258043.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,516 | INFO     | mean y: 2520631.4896551725
[2026-01-13 02:22:53] 2026-01-13 01:21:46,516 | INFO     | intersect: -25312905010.63633
[2026-01-13 02:22:53] 2026-01-13 01:21:46,516 | INFO     | chi2: 7.124433434190707
[2026-01-13 02:22:53] 2026-01-13 01:21:46,516 | INFO     | current chi2=7.124433434190707 (change=9.032457114926679 %)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,517 | INFO     | right removable region: 289
[2026-01-13 02:22:53] 2026-01-13 01:21:46,517 | INFO     | sum of square deviations: 7562532492.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,520 | INFO     | sum of deviations: -13316604084.999977
[2026-01-13 02:22:53] 2026-01-13 01:21:46,520 | INFO     | mean x: 1768258348.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,521 | INFO     | mean y: 2553390.206896552
[2026-01-13 02:22:53] 2026-01-13 01:21:46,521 | INFO     | intersect: 3116218868.050847
[2026-01-13 02:22:53] 2026-01-13 01:21:46,521 | INFO     | chi2: 3.1392342623890572
[2026-01-13 02:22:53] 2026-01-13 01:21:46,521 | INFO     | current chi2=3.1392342623890572 (change=59.91703339949769 %)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,522 | INFO     | sum of square deviations: 7178069470.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,533 | INFO     | sum of deviations: -79347636913.00002
[2026-01-13 02:22:53] 2026-01-13 01:21:46,533 | INFO     | mean x: 1768258501.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,534 | INFO     | mean y: 2579499.4701754386
[2026-01-13 02:22:53] 2026-01-13 01:21:46,534 | INFO     | intersect: 19549218619.093197
[2026-01-13 02:22:53] 2026-01-13 01:21:46,534 | INFO     | chi2: 1.1086850081302693
[2026-01-13 02:22:53] 2026-01-13 01:21:46,534 | INFO     | current chi2=1.1086850081302693 (change=64.68294764066047 %)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,535 | INFO     | sum of square deviations: 6806862510.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,538 | INFO     | sum of deviations: -88189710285.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,538 | INFO     | mean x: 1768258653.5
[2026-01-13 02:22:53] 2026-01-13 01:21:46,538 | INFO     | mean y: 2583120.2607142855
[2026-01-13 02:22:53] 2026-01-13 01:21:46,539 | INFO     | intersect: 22912142132.639435
[2026-01-13 02:22:53] 2026-01-13 01:21:46,539 | INFO     | chi2: 1.0411667892635732
[2026-01-13 02:22:53] 2026-01-13 01:21:46,539 | INFO     | current chi2=1.0411667892635732 (change=6.089937030948176 %)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,539 | INFO     | left removable region: 30
[2026-01-13 02:22:53] 2026-01-13 01:21:46,540 | INFO     | sum of square deviations: 5387301010.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,542 | INFO     | sum of deviations: -46156741717.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,543 | INFO     | mean x: 1768258928.0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,543 | INFO     | mean y: 2581624.359073359
[2026-01-13 02:22:53] 2026-01-13 01:21:46,543 | INFO     | intersect: 15152481449.331968
[2026-01-13 02:22:53] 2026-01-13 01:21:46,543 | INFO     | chi2: 0.21892727371136422
[2026-01-13 02:22:53] 2026-01-13 01:21:46,544 | INFO     | current memory leak: -8.57 B/s (using 259 data points, chi2=0.22)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,544 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,544 | INFO     | ..............................
[2026-01-13 02:22:53] 2026-01-13 01:21:46,544 | INFO     | . Timing measurements:
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . get job = 0 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . initial setup = 10 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . payload setup = 161 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . stage-in = 0 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . payload execution = 18129 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . stage-out = 4 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | . log creation = 1 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,545 | INFO     | ..............................
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | job summary report
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | --------------------------------------------------
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | PanDA job id: 6967163136
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | task id: 48188648
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | errors: (none)
[2026-01-13 02:22:53] 2026-01-13 01:21:46,675 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | pilot state: finished 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | transexitcode: 0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | exeerrorcode: 0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | exeerrordiag: 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | exitcode: 0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | exitmsg: OK
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | cpuconsumptiontime: 65389 s
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | nevents: 400
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | neventsw: 0
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | pid: 15697
[2026-01-13 02:22:53] 2026-01-13 01:21:46,676 | INFO     | pgrp: 15697
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | corecount: 8
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | event service: False
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | sizes: {0: 2283945, 1: 2284144, 12: 2284144, 23: 2284172, 33: 2284200, 44: 2284256, 55: 2284412, 66: 2284440, 76: 2284468, 87: 2284524, 98: 2284552, 105: 2285122, 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | --------------------------------------------------
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | 
[2026-01-13 02:22:53] 2026-01-13 01:21:46,677 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-13 02:22:53] 2026-01-13 01:21:46,787 | INFO     | time since job start (18636s) is within the limit (349056.0s)
[2026-01-13 02:22:53] 2026-01-13 01:21:47,206 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,206 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,207 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,208 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 02:22:53] 2026-01-13 01:21:47,209 | INFO     | job 6967163136 has completed (purged errors)
[2026-01-13 02:22:53] 2026-01-13 01:21:47,209 | INFO     | overall cleanup function is called
[2026-01-13 02:22:53] 2026-01-13 01:21:48,217 | INFO     | --- collectZombieJob: --- 10, [15697]
[2026-01-13 02:22:53] 2026-01-13 01:21:48,218 | INFO     | zombie collector waiting for pid 15697
[2026-01-13 02:22:53] 2026-01-13 01:21:48,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 02:22:53] 2026-01-13 01:21:48,218 | INFO     | collected zombie processes
[2026-01-13 02:22:53] 2026-01-13 01:21:48,218 | INFO     | will attempt to kill all subprocesses of pid=15697
[2026-01-13 02:22:53] 2026-01-13 01:21:48,306 | INFO     | process IDs to be killed: [15697] (in reverse order)
[2026-01-13 02:22:53] 2026-01-13 01:21:49,156 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 02:22:53] 2026-01-13 01:21:49,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 02:22:53] 2026-01-13 01:21:49,159 | INFO     | did not find any defunct processes belonging to 15697
[2026-01-13 02:22:53] 2026-01-13 01:21:49,164 | INFO     | did not find any defunct processes belonging to 15697
[2026-01-13 02:22:53] 2026-01-13 01:21:49,164 | INFO     | ready for new job
[2026-01-13 02:22:53] 2026-01-13 01:21:49,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 02:22:53] 2026-01-13 01:21:49,166 | INFO     | ***************************************
[2026-01-13 02:22:53] 2026-01-13 01:21:49,166 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 02:22:53] 2026-01-13 01:21:49,166 | INFO     | ***************************************
[2026-01-13 02:22:53] 2026-01-13 01:21:49,167 | INFO     | 
[2026-01-13 02:22:53] 2026-01-13 01:21:49,167 | INFO     | pilot is running in a VM
[2026-01-13 02:22:53] 2026-01-13 01:21:49,167 | INFO     | architecture information:
[2026-01-13 02:22:53] 2026-01-13 01:21:49,181 | INFO     | executing command: cat /etc/os-release
[2026-01-13 02:22:53] 2026-01-13 01:21:49,470 | INFO     | cat /etc/os-release:
[2026-01-13 02:22:53] NAME="CentOS Linux"
[2026-01-13 02:22:53] VERSION="7 (Core)"
[2026-01-13 02:22:53] ID="centos"
[2026-01-13 02:22:53] ID_LIKE="rhel fedora"
[2026-01-13 02:22:53] VERSION_ID="7"
[2026-01-13 02:22:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 02:22:53] ANSI_COLOR="0;31"
[2026-01-13 02:22:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 02:22:53] HOME_URL="https://www.centos.org/"
[2026-01-13 02:22:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 02:22:53] 
[2026-01-13 02:22:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 02:22:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 02:22:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 02:22:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 02:22:53] 
[2026-01-13 02:22:53] 2026-01-13 01:21:49,471 | INFO     | ***************************************
[2026-01-13 02:22:53] 2026-01-13 01:21:49,974 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-13 02:22:53] 2026-01-13 01:21:50,146 | INFO     | sufficient remaining disk space (495963865088 B)
[2026-01-13 02:22:53] 2026-01-13 01:21:50,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 02:22:53] 2026-01-13 01:21:50,147 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 02:22:53] 2026-01-13 01:21:50,147 | INFO     | update_server=False
[2026-01-13 02:22:53] 2026-01-13 01:21:50,147 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 02:22:53] 2026-01-13 01:21:50,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 02:22:53] 2026-01-13 01:21:50,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:22:53] 2026-01-13 01:21:50,184 | INFO     | aborting loop
[2026-01-13 02:22:53] 2026-01-13 01:21:50,451 | INFO     | all data control threads have been joined
[2026-01-13 02:22:53] 2026-01-13 01:21:51,012 | INFO     | all payload control threads have been joined
[2026-01-13 02:22:53] 2026-01-13 01:21:51,153 | INFO     | [job] retrieve thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,190 | INFO     | [job] job monitor thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,197 | INFO     | [data] copytool_in thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,367 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,457 | INFO     | [data] control thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,600 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,663 | INFO     | [payload] validate_post thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:51,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:22:53] 2026-01-13 01:21:51,835 | INFO     | all job control threads have been joined
[2026-01-13 02:22:53] 2026-01-13 01:21:52,019 | INFO     | [payload] control thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,154 | INFO     | [data] copytool_out thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,189 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 02:22:53] 2026-01-13 01:21:52,520 | INFO     | [job] validate thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,648 | INFO     | [payload] failed_post thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,697 | INFO     | [job] queue monitor thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:52,842 | INFO     | [job] control thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:21:56,511 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:22:00,631 | INFO     | job.realtimelogging is not enabled
[2026-01-13 02:22:53] 2026-01-13 01:22:01,638 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 02:22:53] 2026-01-13 01:22:19,925 | INFO     | PID=9220 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-13 02:22:53] 2026-01-13 01:22:19,925 | INFO     | .. there are 2 such processes running
[2026-01-13 02:22:53] 2026-01-13 01:22:19,926 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 02:22:53] 2026-01-13 01:22:19,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 02:22:53] 2026-01-13 01:22:19,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 02:22:53] 2026-01-13 01:22:42,138 | INFO     | [monitor] cgroup control has ended
[2026-01-13 02:22:53] 2026-01-13 01:22:42,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219710945088)>', '<ExcThread(monitor, started 140218996877056)>']
[2026-01-13 02:22:53] 2026-01-13 01:22:43,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 02:22:53] 2026-01-13 01:22:43,063 | INFO     | [monitor] control thread has ended
[2026-01-13 02:22:53] 2026-01-13 01:22:47,938 | INFO     | all workflow threads have been joined
[2026-01-13 02:22:53] 2026-01-13 01:22:47,938 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 02:22:53] 2026-01-13 01:22:47,938 | INFO     | traces error code: 0
[2026-01-13 02:22:53] 2026-01-13 01:22:47,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 02:22:53] 2026-01-13 01:22:48,279 [wrapper] ==== pilot stdout END ====
[2026-01-13 02:22:53] 2026-01-13 01:22:48,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 02:22:53] 2026-01-13 01:22:48,507 [wrapper] pilotpid: 9220
[2026-01-13 02:22:53] 2026-01-13 01:22:48,640 [wrapper] Pilot exit status: 0
[2026-01-13 02:22:53] 2026-01-13 01:22:49,231 [wrapper] pandaids: 6967163136
[2026-01-13 02:22:53] 2026-01-13 01:22:50,235 [wrapper] cleanup supervisor_pilot 13292 9221
[2026-01-13 02:22:53] 2026-01-13 01:22:50,333 [wrapper] Test setup, not cleaning
[2026-01-13 02:22:53] 2026-01-13 01:22:50,430 [wrapper] apfmon messages muted
[2026-01-13 02:22:53] 2026-01-13 01:22:50,526 [wrapper] ==== wrapper stdout END ====
[2026-01-13 02:22:53] 2026-01-13 01:22:50,596 [wrapper] ==== wrapper stderr END ====
[2026-01-13 02:22:53]  *** Error codes and diagnostics ***
[2026-01-13 02:22:53]     "exeErrorCode": 0,
[2026-01-13 02:22:53]     "exeErrorDiag": "",
[2026-01-13 02:22:53]     "pilotErrorCode": 0,
[2026-01-13 02:22:53]     "pilotErrorDiag": "",
[2026-01-13 02:22:53]  *** Listing of results directory ***
[2026-01-13 02:22:53] total 559668
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc    579449 Jan 12 17:03 pilot3.tar.gz
[2026-01-13 02:22:53] -rwx------. 1 boinc boinc     36322 Jan 12 17:06 runpilot2-wrapper.sh
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc      5112 Jan 12 17:06 queuedata.json
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc       100 Jan 12 21:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 02:22:53] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 21:06 run_atlas
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc       105 Jan 12 21:06 job.xml
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc      6392 Jan 12 21:06 init_data.xml
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc 313799512 Jan 12 21:06 EVNT.48188646._000009.pool.root.1
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc     15847 Jan 12 21:06 start_atlas.sh
[2026-01-13 02:22:53] drwxrwx--x. 2 boinc boinc        68 Jan 12 21:06 shared
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc    592403 Jan 12 21:06 input.tar.gz
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc         0 Jan 12 21:06 boinc_lockfile
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc      2623 Jan 12 21:06 pandaJob.out
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc    988547 Jan 12 21:11 agis_schedconf.cvmfs.json
[2026-01-13 02:22:53] drwx------. 5 boinc boinc      4096 Jan 12 21:11 pilot3
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc 249315176 Jan 13 02:18 HITS.48188648._000033.pool.root.1
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc       531 Jan 13 02:18 boinc_task_state.xml
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc      1013 Jan 13 02:19 memory_monitor_summary.json
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc   1516240 Jan 13 02:19 agis_ddmendpoints.agis.ALL.json
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc    546122 Jan 13 02:19 log.48188648._000033.job.log.tgz.1
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc      7767 Jan 13 02:21 heartbeat.json
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc        95 Jan 13 02:22 pilot_heartbeat.json
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc      8192 Jan 13 02:22 boinc_mmap_file
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc        28 Jan 13 02:22 wrapper_checkpoint.txt
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc      4956 Jan 13 02:22 pilotlog.txt
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc   2497800 Jan 13 02:22 log.48188648._000033.job.log.1
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc       357 Jan 13 02:22 output.list
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc       620 Jan 13 02:22 runtime_log
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc   3061760 Jan 13 02:22 result.tar.gz
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc      8833 Jan 13 02:22 runtime_log.err
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc       657 Jan 13 02:22 obeNDmGcZz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOinKDmqsRMQo.diag
[2026-01-13 02:22:53] -rw-r--r--. 1 boinc boinc     20710 Jan 13 02:22 stderr.txt
[2026-01-13 02:22:53] HITS file was successfully produced:
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc 249315176 Jan 13 02:18 shared/HITS.pool.root.1
[2026-01-13 02:22:53]  *** Contents of shared directory: ***
[2026-01-13 02:22:53] total 553508
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc 313799512 Jan 12 21:06 ATLAS.root_0
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc     15847 Jan 12 21:06 start_atlas.sh
[2026-01-13 02:22:53] -rw-r--r--. 2 boinc boinc    592403 Jan 12 21:06 input.tar.gz
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc 249315176 Jan 13 02:18 HITS.pool.root.1
[2026-01-13 02:22:53] -rw-------. 1 boinc boinc   3061760 Jan 13 02:22 result.tar.gz
02:22:55 (5439): run_atlas exited; CPU time 65564.853706
02:22:55 (5439): called boinc_finish(0)

</stderr_txt>
]]>

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