Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:27 (206866): wrapper (7.7.26015): starting
00:58:27 (206866): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 00:58:27] Arguments: --nthreads 4
[2026-01-13 00:58:27] Threads: 4
[2026-01-13 00:58:27] Checking for CVMFS
[2026-01-13 00:58:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 00:58:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 00:58:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 00:58:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 00:58:28] 2.9.2.0 14824 643 69956 155070 1 68 27561762 36864001 0 130560 0 315948 99.984 24670 20731 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 00:58:28] CVMFS is ok
[2026-01-13 00:58:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 00:58:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 00:58:28] Further information can be found at the LHC@home message board.
[2026-01-13 00:58:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 00:58:28] Checking for apptainer binary...
[2026-01-13 00:58:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 00:58:28] Running /usr/bin/apptainer --version
[2026-01-13 00:58:28] apptainer version 1.4.1-1.1
[2026-01-13 00:58:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 00:58:28] atlasA237
[2026-01-13 00:58:28] apptainer works
[2026-01-13 00:58:28] Set ATHENA_PROC_NUMBER=4
[2026-01-13 00:58:28] Set ATHENA_CORE_NUMBER=4
[2026-01-13 00:58:28] Starting ATLAS job with PandaID=6966979314
[2026-01-13 00:58:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 02:04:50]  *** The last 200 lines of the pilot log: ***
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,735 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | job 6966979314 has completed (purged errors)
[2026-01-13 02:04:50] 2026-01-13 01:04:18,736 | INFO     | overall cleanup function is called
[2026-01-13 02:04:50] 2026-01-13 01:04:19,743 | INFO     | --- collectZombieJob: --- 10, [217314]
[2026-01-13 02:04:50] 2026-01-13 01:04:19,743 | INFO     | zombie collector waiting for pid 217314
[2026-01-13 02:04:50] 2026-01-13 01:04:19,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 02:04:50] 2026-01-13 01:04:19,743 | INFO     | collected zombie processes
[2026-01-13 02:04:50] 2026-01-13 01:04:19,743 | INFO     | will attempt to kill all subprocesses of pid=217314
[2026-01-13 02:04:50] 2026-01-13 01:04:19,811 | INFO     | process IDs to be killed: [217314] (in reverse order)
[2026-01-13 02:04:50] 2026-01-13 01:04:19,852 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 02:04:50] 2026-01-13 01:04:19,852 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 02:04:50] 2026-01-13 01:04:19,855 | INFO     | did not find any defunct processes belonging to 217314
[2026-01-13 02:04:50] 2026-01-13 01:04:19,857 | INFO     | did not find any defunct processes belonging to 217314
[2026-01-13 02:04:50] 2026-01-13 01:04:19,857 | INFO     | ready for new job
[2026-01-13 02:04:50] 2026-01-13 01:04:19,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | ***************************************
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | ***************************************
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | 
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | architecture information:
[2026-01-13 02:04:50] 2026-01-13 01:04:19,858 | INFO     | executing command: cat /etc/os-release
[2026-01-13 02:04:50] 2026-01-13 01:04:19,872 | INFO     | cat /etc/os-release:
[2026-01-13 02:04:50] NAME="CentOS Linux"
[2026-01-13 02:04:50] VERSION="7 (Core)"
[2026-01-13 02:04:50] ID="centos"
[2026-01-13 02:04:50] ID_LIKE="rhel fedora"
[2026-01-13 02:04:50] VERSION_ID="7"
[2026-01-13 02:04:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 02:04:50] ANSI_COLOR="0;31"
[2026-01-13 02:04:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 02:04:50] HOME_URL="https://www.centos.org/"
[2026-01-13 02:04:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 02:04:50] 
[2026-01-13 02:04:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 02:04:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 02:04:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 02:04:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 02:04:50] 
[2026-01-13 02:04:50] 2026-01-13 01:04:19,872 | INFO     | ***************************************
[2026-01-13 02:04:50] 2026-01-13 01:04:20,376 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | INFO     | sufficient remaining disk space (332576849920 B)
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | INFO     | update_server=False
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 02:04:50] 2026-01-13 01:04:20,393 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:04:50] 2026-01-13 01:04:20,441 | INFO     | all job control threads have been joined
[2026-01-13 02:04:50] 2026-01-13 01:04:20,733 | INFO     | all data control threads have been joined
[2026-01-13 02:04:50] 2026-01-13 01:04:20,768 | INFO     | all payload control threads have been joined
[2026-01-13 02:04:50] 2026-01-13 01:04:20,807 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 02:04:50] 2026-01-13 01:04:20,808 | INFO     | aborting loop
[2026-01-13 02:04:50] 2026-01-13 01:04:21,399 | INFO     | [job] retrieve thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,399 | INFO     | [job] queue monitor thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,447 | INFO     | [job] control thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,458 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,458 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,738 | INFO     | [data] control thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,768 | INFO     | [data] copytool_in thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,774 | INFO     | [payload] control thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,779 | INFO     | [payload] failed_post thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:21,813 | INFO     | [job] job monitor thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:22,156 | INFO     | [payload] validate_post thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:22,399 | INFO     | [data] copytool_out thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:22,783 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:22,848 | INFO     | [job] validate thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:24,400 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:30,509 | INFO     | job.realtimelogging is not enabled
[2026-01-13 02:04:50] 2026-01-13 01:04:31,511 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 02:04:50] 2026-01-13 01:04:40,603 | INFO     | [monitor] cgroup control has ended
[2026-01-13 02:04:50] 2026-01-13 01:04:42,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140017573431104)>', '<ExcThread(monitor, started 140016781084416)>']
[2026-01-13 02:04:50] 2026-01-13 01:04:47,638 | INFO     | all workflow threads have been joined
[2026-01-13 02:04:50] 2026-01-13 01:04:47,638 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 02:04:50] 2026-01-13 01:04:47,638 | INFO     | traces error code: 0
[2026-01-13 02:04:50] 2026-01-13 01:04:47,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 02:04:50] 2026-01-13 01:04:50,341 | INFO     | PID=210675 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-13 02:04:50] 2026-01-13 01:04:50,342 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 02:04:50] 2026-01-13 01:04:50,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 02:04:50] 2026-01-13 01:04:50,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 02:04:50] 2026-01-13 01:04:50,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 02:04:50] 2026-01-13 01:04:50,342 | INFO     | [monitor] control thread has ended
[2026-01-13 02:04:50] 2026-01-13 01:04:50,412 [wrapper] ==== pilot stdout END ====
[2026-01-13 02:04:50] 2026-01-13 01:04:50,416 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 02:04:50] 2026-01-13 01:04:50,419 [wrapper] pilotpid: 210675
[2026-01-13 02:04:50] 2026-01-13 01:04:50,423 [wrapper] Pilot exit status: 0
[2026-01-13 02:04:50] 2026-01-13 01:04:50,434 [wrapper] pandaids: 6966979314
[2026-01-13 02:04:50] 2026-01-13 01:04:50,460 [wrapper] cleanup supervisor_pilot  231048 210676
[2026-01-13 02:04:50] 2026-01-13 01:04:50,464 [wrapper] Test setup, not cleaning
[2026-01-13 02:04:50] 2026-01-13 01:04:50,468 [wrapper] apfmon messages muted
[2026-01-13 02:04:50] 2026-01-13 01:04:50,472 [wrapper] ==== wrapper stdout END ====
[2026-01-13 02:04:50] 2026-01-13 01:04:50,476 [wrapper] ==== wrapper stderr END ====
[2026-01-13 02:04:50]  *** Error codes and diagnostics ***
[2026-01-13 02:04:50]     "exeErrorCode": 0,
[2026-01-13 02:04:50]     "exeErrorDiag": "",
[2026-01-13 02:04:50]     "pilotErrorCode": 0,
[2026-01-13 02:04:50]     "pilotErrorDiag": "",
[2026-01-13 02:04:50]  *** Listing of results directory ***
[2026-01-13 02:04:50] total 479608
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-13 02:04:50] -rwx------ 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc       100 Jan 13 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 02:04:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 00:58 run_atlas
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc       105 Jan 13 00:58 job.xml
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc 291075659 Jan 13 00:58 EVNT.48188454._000003.pool.root.1
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc    592404 Jan 13 00:58 input.tar.gz
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc     15847 Jan 13 00:58 start_atlas.sh
[2026-01-13 02:04:50] drwxrwx--x 2 boinc boinc      4096 Jan 13 00:58 shared
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc         0 Jan 13 00:58 boinc_setup_complete
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc      6371 Jan 13 00:58 init_data.xml
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc         0 Jan 13 00:58 boinc_lockfile
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc      2619 Jan 13 00:58 pandaJob.out
[2026-01-13 02:04:50] -rw------- 1 boinc boinc    988531 Jan 13 00:58 agis_schedconf.cvmfs.json
[2026-01-13 02:04:50] -rw------- 1 boinc boinc   1516240 Jan 13 00:58 agis_ddmendpoints.agis.ALL.json
[2026-01-13 02:04:50] drwx------ 5 boinc boinc      4096 Jan 13 00:58 pilot3
[2026-01-13 02:04:50] -rw------- 1 boinc boinc 194362898 Jan 13 02:03 HITS.48188456._000075.pool.root.1
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc       529 Jan 13 02:04 boinc_task_state.xml
[2026-01-13 02:04:50] -rw------- 1 boinc boinc        95 Jan 13 02:04 pilot_heartbeat.json
[2026-01-13 02:04:50] -rw------- 1 boinc boinc      1028 Jan 13 02:04 memory_monitor_summary.json
[2026-01-13 02:04:50] -rw------- 1 boinc boinc    298668 Jan 13 02:04 log.48188456._000075.job.log.tgz.1
[2026-01-13 02:04:50] -rw------- 1 boinc boinc      7778 Jan 13 02:04 heartbeat.json
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc        27 Jan 13 02:04 wrapper_checkpoint.txt
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc      8192 Jan 13 02:04 boinc_mmap_file
[2026-01-13 02:04:50] -rw------- 1 boinc boinc       746 Jan 13 02:04 pilotlog.txt
[2026-01-13 02:04:50] -rw------- 1 boinc boinc    588407 Jan 13 02:04 log.48188456._000075.job.log.1
[2026-01-13 02:04:50] -rw------- 1 boinc boinc       357 Jan 13 02:04 output.list
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc       620 Jan 13 02:04 runtime_log
[2026-01-13 02:04:50] -rw------- 1 boinc boinc    911360 Jan 13 02:04 result.tar.gz
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc      8912 Jan 13 02:04 runtime_log.err
[2026-01-13 02:04:50] -rw------- 1 boinc boinc       661 Jan 13 02:04 KVPNDm5ZWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTdnKDmvULfXn.diag
[2026-01-13 02:04:50] -rw-r--r-- 1 boinc boinc     12432 Jan 13 02:04 stderr.txt
[2026-01-13 02:04:50] HITS file was successfully produced:
[2026-01-13 02:04:50] -rw------- 1 boinc boinc 194362898 Jan 13 02:03 shared/HITS.pool.root.1
[2026-01-13 02:04:50]  *** Contents of shared directory: ***
[2026-01-13 02:04:50] total 475560
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc 291075659 Jan 13 00:58 ATLAS.root_0
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc    592404 Jan 13 00:58 input.tar.gz
[2026-01-13 02:04:50] -rw-r--r-- 2 boinc boinc     15847 Jan 13 00:58 start_atlas.sh
[2026-01-13 02:04:50] -rw------- 1 boinc boinc 194362898 Jan 13 02:03 HITS.pool.root.1
[2026-01-13 02:04:50] -rw------- 1 boinc boinc    911360 Jan 13 02:04 result.tar.gz
02:04:52 (206866): run_atlas exited; CPU time 14798.278990
02:04:52 (206866): called boinc_finish(0)

</stderr_txt>
]]>

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