Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:21:14 (4090431): wrapper (7.7.26015): starting
15:21:14 (4090431): wrapper: running run_atlas (--nthreads 2)
[2026-01-12 15:21:14] Arguments: --nthreads 2
[2026-01-12 15:21:14] Threads: 2
[2026-01-12 15:21:14] Checking for CVMFS
[2026-01-12 15:21:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 15:21:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 15:21:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 15:21:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 15:21:16] 2.9.2.0 4090626 0 30068 155055 3 1 27072119 36864000 0 130560 0 0 0.000 1335 10511 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 15:21:16] CVMFS is ok
[2026-01-12 15:21:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 15:21:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 15:21:16] Further information can be found at the LHC@home message board.
[2026-01-12 15:21:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 15:21:16] Checking for apptainer binary...
[2026-01-12 15:21:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 15:21:16] Running /usr/bin/apptainer --version
[2026-01-12 15:21:16] apptainer version 1.4.1-1.1
[2026-01-12 15:21:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 15:21:16] magicA244
[2026-01-12 15:21:16] apptainer works
[2026-01-12 15:21:16] Set ATHENA_PROC_NUMBER=2
[2026-01-12 15:21:16] Set ATHENA_CORE_NUMBER=2
[2026-01-12 15:21:16] Starting ATLAS job with PandaID=6967000994
[2026-01-12 15:21:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 18:18:53]  *** The last 200 lines of the pilot log: ***
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | job 6967000994 has completed (purged errors)
[2026-01-12 18:18:53] 2026-01-12 17:18:20,777 | INFO     | overall cleanup function is called
[2026-01-12 18:18:53] 2026-01-12 17:18:21,783 | INFO     | --- collectZombieJob: --- 10, [4101110]
[2026-01-12 18:18:53] 2026-01-12 17:18:21,784 | INFO     | zombie collector waiting for pid 4101110
[2026-01-12 18:18:53] 2026-01-12 17:18:21,784 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 18:18:53] 2026-01-12 17:18:21,784 | INFO     | collected zombie processes
[2026-01-12 18:18:53] 2026-01-12 17:18:21,784 | INFO     | will attempt to kill all subprocesses of pid=4101110
[2026-01-12 18:18:53] 2026-01-12 17:18:21,816 | INFO     | process IDs to be killed: [4101110] (in reverse order)
[2026-01-12 18:18:53] 2026-01-12 17:18:21,836 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 18:18:53] 2026-01-12 17:18:21,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 18:18:53] 2026-01-12 17:18:21,837 | INFO     | did not find any defunct processes belonging to 4101110
[2026-01-12 18:18:53] 2026-01-12 17:18:21,837 | INFO     | did not find any defunct processes belonging to 4101110
[2026-01-12 18:18:53] 2026-01-12 17:18:21,837 | INFO     | ready for new job
[2026-01-12 18:18:53] 2026-01-12 17:18:21,837 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | ***************************************
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | ***************************************
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | 
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | architecture information:
[2026-01-12 18:18:53] 2026-01-12 17:18:21,838 | INFO     | executing command: cat /etc/os-release
[2026-01-12 18:18:53] 2026-01-12 17:18:21,846 | INFO     | cat /etc/os-release:
[2026-01-12 18:18:53] NAME="CentOS Linux"
[2026-01-12 18:18:53] VERSION="7 (Core)"
[2026-01-12 18:18:53] ID="centos"
[2026-01-12 18:18:53] ID_LIKE="rhel fedora"
[2026-01-12 18:18:53] VERSION_ID="7"
[2026-01-12 18:18:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 18:18:53] ANSI_COLOR="0;31"
[2026-01-12 18:18:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 18:18:53] HOME_URL="https://www.centos.org/"
[2026-01-12 18:18:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 18:18:53] 
[2026-01-12 18:18:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 18:18:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 18:18:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 18:18:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 18:18:53] 
[2026-01-12 18:18:53] 2026-01-12 17:18:21,846 | INFO     | ***************************************
[2026-01-12 18:18:53] 2026-01-12 17:18:22,350 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 18:18:53] 2026-01-12 17:18:22,361 | INFO     | sufficient remaining disk space (497416142848 B)
[2026-01-12 18:18:53] 2026-01-12 17:18:22,361 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 18:18:53] 2026-01-12 17:18:22,361 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 18:18:53] 2026-01-12 17:18:22,361 | INFO     | update_server=False
[2026-01-12 18:18:53] 2026-01-12 17:18:22,361 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 18:18:53] 2026-01-12 17:18:22,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:18:53] 2026-01-12 17:18:22,430 | INFO     | all job control threads have been joined
[2026-01-12 18:18:53] 2026-01-12 17:18:22,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 18:18:53] 2026-01-12 17:18:22,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:18:53] 2026-01-12 17:18:22,978 | INFO     | aborting loop
[2026-01-12 18:18:53] 2026-01-12 17:18:23,223 | INFO     | all data control threads have been joined
[2026-01-12 18:18:53] 2026-01-12 17:18:23,367 | INFO     | [job] queue monitor thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,368 | INFO     | [job] retrieve thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,417 | INFO     | all payload control threads have been joined
[2026-01-12 18:18:53] 2026-01-12 17:18:23,436 | INFO     | [job] control thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,719 | INFO     | [payload] failed_post thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,956 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,975 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:23,980 | INFO     | [job] job monitor thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,050 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,051 | INFO     | [data] copytool_in thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,068 | INFO     | [job] validate thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,156 | INFO     | [payload] validate_post thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,229 | INFO     | [data] control thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,422 | INFO     | [payload] control thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,604 | INFO     | [data] copytool_out thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:24,674 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 18:18:53] 2026-01-12 17:18:28,680 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:33,360 | INFO     | job.realtimelogging is not enabled
[2026-01-12 18:18:53] 2026-01-12 17:18:34,365 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 18:18:53] 2026-01-12 17:18:45,885 | INFO     | [monitor] cgroup control has ended
[2026-01-12 18:18:53] 2026-01-12 17:18:46,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885497190208)>', '<ExcThread(monitor, started 139884702447360)>']
[2026-01-12 18:18:53] 2026-01-12 17:18:51,031 | INFO     | all workflow threads have been joined
[2026-01-12 18:18:53] 2026-01-12 17:18:51,031 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 18:18:53] 2026-01-12 17:18:51,031 | INFO     | traces error code: 0
[2026-01-12 18:18:53] 2026-01-12 17:18:51,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 18:18:53] 2026-01-12 17:18:53,128 | INFO     | PID=4094684 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 18:18:53] 2026-01-12 17:18:53,129 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 18:18:53] 2026-01-12 17:18:53,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 18:18:53] 2026-01-12 17:18:53,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 18:18:53] 2026-01-12 17:18:53,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 18:18:53] 2026-01-12 17:18:53,129 | INFO     | [monitor] control thread has ended
[2026-01-12 18:18:53] 2026-01-12 17:18:53,169 [wrapper] ==== pilot stdout END ====
[2026-01-12 18:18:53] 2026-01-12 17:18:53,172 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 18:18:53] 2026-01-12 17:18:53,175 [wrapper] pilotpid: 4094684
[2026-01-12 18:18:53] 2026-01-12 17:18:53,177 [wrapper] Pilot exit status: 0
[2026-01-12 18:18:53] 2026-01-12 17:18:53,183 [wrapper] pandaids: 6967000994
[2026-01-12 18:18:53] 2026-01-12 17:18:53,197 [wrapper] cleanup supervisor_pilot 4120112 4094685
[2026-01-12 18:18:53] 2026-01-12 17:18:53,199 [wrapper] Test setup, not cleaning
[2026-01-12 18:18:53] 2026-01-12 17:18:53,202 [wrapper] apfmon messages muted
[2026-01-12 18:18:53] 2026-01-12 17:18:53,204 [wrapper] ==== wrapper stdout END ====
[2026-01-12 18:18:53] 2026-01-12 17:18:53,206 [wrapper] ==== wrapper stderr END ====
[2026-01-12 18:18:53]  *** Error codes and diagnostics ***
[2026-01-12 18:18:53]     "exeErrorCode": 0,
[2026-01-12 18:18:53]     "exeErrorDiag": "",
[2026-01-12 18:18:53]     "pilotErrorCode": 0,
[2026-01-12 18:18:53]     "pilotErrorDiag": "",
[2026-01-12 18:18:53]  *** Listing of results directory ***
[2026-01-12 18:18:53] total 605992
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc    579449 Jan 12 14:15 pilot3.tar.gz
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc      5112 Jan 12 14:24 queuedata.json
[2026-01-12 18:18:53] -rwx------ 1 boinc boinc     36322 Jan 12 14:28 runpilot2-wrapper.sh
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc       100 Jan 12 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 18:18:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 15:21 run_atlas
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc       105 Jan 12 15:21 job.xml
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc 318371764 Jan 12 15:21 EVNT.48188559._000004.pool.root.1
[2026-01-12 18:18:53] drwxrwx--x 2 boinc boinc      4096 Jan 12 15:21 shared
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc    592409 Jan 12 15:21 input.tar.gz
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc     15847 Jan 12 15:21 start_atlas.sh
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc         0 Jan 12 15:21 boinc_setup_complete
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc      6209 Jan 12 15:21 init_data.xml
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc         0 Jan 12 15:21 boinc_lockfile
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc      2631 Jan 12 15:21 pandaJob.out
[2026-01-12 18:18:53] -rw------- 1 boinc boinc    986112 Jan 12 15:21 agis_schedconf.cvmfs.json
[2026-01-12 18:18:53] -rw------- 1 boinc boinc   1516240 Jan 12 15:21 agis_ddmendpoints.agis.ALL.json
[2026-01-12 18:18:53] drwx------ 5 boinc boinc      4096 Jan 12 15:21 pilot3
[2026-01-12 18:18:53] -rw------- 1 boinc boinc 294541023 Jan 12 18:17 HITS.48188564._000082.pool.root.1
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc       530 Jan 12 18:17 boinc_task_state.xml
[2026-01-12 18:18:53] -rw------- 1 boinc boinc      1012 Jan 12 18:18 memory_monitor_summary.json
[2026-01-12 18:18:53] -rw------- 1 boinc boinc    360416 Jan 12 18:18 log.48188564._000082.job.log.tgz.1
[2026-01-12 18:18:53] -rw------- 1 boinc boinc      7751 Jan 12 18:18 heartbeat.json
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc        28 Jan 12 18:18 wrapper_checkpoint.txt
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc      8192 Jan 12 18:18 boinc_mmap_file
[2026-01-12 18:18:53] -rw------- 1 boinc boinc       747 Jan 12 18:18 pilotlog.txt
[2026-01-12 18:18:53] -rw------- 1 boinc boinc        95 Jan 12 18:18 pilot_heartbeat.json
[2026-01-12 18:18:53] -rw------- 1 boinc boinc   1506319 Jan 12 18:18 log.48188564._000082.job.log.1
[2026-01-12 18:18:53] -rw------- 1 boinc boinc       357 Jan 12 18:18 output.list
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc       620 Jan 12 18:18 runtime_log
[2026-01-12 18:18:53] -rw------- 1 boinc boinc   1884160 Jan 12 18:18 result.tar.gz
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc      8913 Jan 12 18:18 runtime_log.err
[2026-01-12 18:18:53] -rw------- 1 boinc boinc       665 Jan 12 18:18 ocUKDmp8Wz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0gnKDmW73PYo.diag
[2026-01-12 18:18:53] -rw-r--r-- 1 boinc boinc     11914 Jan 12 18:18 stderr.txt
[2026-01-12 18:18:53] HITS file was successfully produced:
[2026-01-12 18:18:53] -rw------- 1 boinc boinc 294541023 Jan 12 18:17 shared/HITS.pool.root.1
[2026-01-12 18:18:53]  *** Contents of shared directory: ***
[2026-01-12 18:18:53] total 600996
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc 318371764 Jan 12 15:21 ATLAS.root_0
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc    592409 Jan 12 15:21 input.tar.gz
[2026-01-12 18:18:53] -rw-r--r-- 2 boinc boinc     15847 Jan 12 15:21 start_atlas.sh
[2026-01-12 18:18:53] -rw------- 1 boinc boinc 294541023 Jan 12 18:17 HITS.pool.root.1
[2026-01-12 18:18:53] -rw------- 1 boinc boinc   1884160 Jan 12 18:18 result.tar.gz
18:18:55 (4090431): run_atlas exited; CPU time 20750.587447
18:18:55 (4090431): called boinc_finish(0)

</stderr_txt>
]]>

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