Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:50:54 (17568): wrapper (7.7.26015): starting
14:50:54 (17568): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 14:50:54] Arguments: --nthreads 8
[2026-01-12 14:50:54] Threads: 8
[2026-01-12 14:50:54] Checking for CVMFS
[2026-01-12 14:50:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 14:50:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 14:50:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 14:50:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 14:50:58] 2.11.2.0 16377 39795 100604 155054 2 11 22736271 25165824 96 130560 0 16222562 99.830 9561667 2150 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 14:50:58] CVMFS is ok
[2026-01-12 14:50:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 14:50:58] Checking for apptainer binary...
[2026-01-12 14:50:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 14:50:58] Running /usr/bin/apptainer --version
[2026-01-12 14:50:58] apptainer version 1.3.2-1.el7
[2026-01-12 14:50:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 14:51:20] cg-vwn414.simple-grid.lan
[2026-01-12 14:51:20] apptainer works
[2026-01-12 14:51:20] Set ATHENA_PROC_NUMBER=8
[2026-01-12 14:51:20] Set ATHENA_CORE_NUMBER=8
[2026-01-12 14:51:20] Starting ATLAS job with PandaID=6966979467
[2026-01-12 14:51:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 18:59:10]  *** The last 200 lines of the pilot log: ***
[2026-01-12 18:59:10] 2026-01-12 17:58:21,427 | INFO     | time since job start (14566s) is within the limit (349056.0s)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,037 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 18:59:10] 2026-01-12 17:58:22,038 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-12 18:59:10] 2026-01-12 17:58:22,040 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6966979467/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,041 | INFO     | extracted standard info from prmon json
[2026-01-12 18:59:10] 2026-01-12 17:58:22,042 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 18:59:10] 2026-01-12 17:58:22,042 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 18:59:10] 2026-01-12 17:58:22,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 18:59:10] 2026-01-12 17:58:22,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 18:59:10] 2026-01-12 17:58:22,047 | INFO     | fitting pss+swap vs Time
[2026-01-12 18:59:10] 2026-01-12 17:58:22,057 | INFO     | sum of square deviations: 3675146117.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,059 | INFO     | sum of deviations: 135684281066.49986
[2026-01-12 18:59:10] 2026-01-12 17:58:22,060 | INFO     | mean x: 1768233612.5
[2026-01-12 18:59:10] 2026-01-12 17:58:22,060 | INFO     | mean y: 2435405.714912281
[2026-01-12 18:59:10] 2026-01-12 17:58:22,060 | INFO     | intersect: -65279732658.266426
[2026-01-12 18:59:10] 2026-01-12 17:58:22,060 | INFO     | chi2: 9.083354232426736
[2026-01-12 18:59:10] 2026-01-12 17:58:22,061 | INFO     | sum of square deviations: 3438620752.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,063 | INFO     | sum of deviations: 147834297391.99994
[2026-01-12 18:59:10] 2026-01-12 17:58:22,063 | INFO     | mean x: 1768233460.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,063 | INFO     | mean y: 2443063.847533632
[2026-01-12 18:59:10] 2026-01-12 17:58:22,063 | INFO     | intersect: -76018022709.26341
[2026-01-12 18:59:10] 2026-01-12 17:58:22,064 | INFO     | chi2: 8.386970948166082
[2026-01-12 18:59:10] 2026-01-12 17:58:22,064 | INFO     | current chi2=8.386970948166082 (change=7.666587324918246 %)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,064 | INFO     | right removable region: 222
[2026-01-12 18:59:10] 2026-01-12 17:58:22,065 | INFO     | sum of square deviations: 3438620752.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,067 | INFO     | sum of deviations: 55744876108.00003
[2026-01-12 18:59:10] 2026-01-12 17:58:22,067 | INFO     | mean x: 1768233765.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,067 | INFO     | mean y: 2486915.8968609865
[2026-01-12 18:59:10] 2026-01-12 17:58:22,067 | INFO     | intersect: -28663068046.09664
[2026-01-12 18:59:10] 2026-01-12 17:58:22,067 | INFO     | chi2: 3.928901601166174
[2026-01-12 18:59:10] 2026-01-12 17:58:22,068 | INFO     | current chi2=3.928901601166174 (change=56.746136937604405 %)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,068 | INFO     | sum of square deviations: 3212467674.5
[2026-01-12 18:59:10] 2026-01-12 17:58:22,070 | INFO     | sum of deviations: -6140675379.500011
[2026-01-12 18:59:10] 2026-01-12 17:58:22,070 | INFO     | mean x: 1768233917.5
[2026-01-12 18:59:10] 2026-01-12 17:58:22,070 | INFO     | mean y: 2528609.4357798165
[2026-01-12 18:59:10] 2026-01-12 17:58:22,070 | INFO     | intersect: 3382531642.1757455
[2026-01-12 18:59:10] 2026-01-12 17:58:22,071 | INFO     | chi2: 1.1008669716806914
[2026-01-12 18:59:10] 2026-01-12 17:58:22,071 | INFO     | current chi2=1.1008669716806914 (change=71.98028651687451 %)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,072 | INFO     | sum of square deviations: 2996454322.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,073 | INFO     | sum of deviations: -23306198080.999996
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | mean x: 1768234070.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | mean y: 2540672.835680751
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | intersect: 13755733300.009262
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | chi2: 0.8502773238046877
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | current chi2=0.8502773238046877 (change=22.76293633311834 %)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,074 | INFO     | left removable region: 30
[2026-01-12 18:59:10] 2026-01-12 17:58:22,075 | INFO     | sum of square deviations: 2194675568.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,076 | INFO     | sum of deviations: -10814115563.0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,077 | INFO     | mean x: 1768234344.5
[2026-01-12 18:59:10] 2026-01-12 17:58:22,082 | INFO     | mean y: 2553103.65625
[2026-01-12 18:59:10] 2026-01-12 17:58:22,082 | INFO     | intersect: 8715408353.288553
[2026-01-12 18:59:10] 2026-01-12 17:58:22,083 | INFO     | chi2: 0.022613061616233103
[2026-01-12 18:59:10] 2026-01-12 17:58:22,083 | INFO     | current memory leak: -4.93 B/s (using 192 data points, chi2=0.02)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,083 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | ..............................
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . Timing measurements:
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . get job = 0 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . initial setup = 9 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . payload setup = 150 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . stage-in = 0 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,084 | INFO     | . payload execution = 14071 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,085 | INFO     | . stage-out = 5 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,085 | INFO     | . log creation = 1 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,085 | INFO     | ..............................
[2026-01-12 18:59:10] 2026-01-12 17:58:22,241 | INFO     | 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,241 | INFO     | job summary report
[2026-01-12 18:59:10] 2026-01-12 17:58:22,241 | INFO     | --------------------------------------------------
[2026-01-12 18:59:10] 2026-01-12 17:58:22,241 | INFO     | PanDA job id: 6966979467
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | task id: 48188456
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | errors: (none)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | pilot state: finished 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | transexitcode: 0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | exeerrorcode: 0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | exeerrordiag: 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | exitcode: 0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,242 | INFO     | exitmsg: OK
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | cpuconsumptiontime: 50904 s
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | nevents: 400
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | neventsw: 0
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | pid: 28086
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | pgrp: 28086
[2026-01-12 18:59:10] 2026-01-12 17:58:22,243 | INFO     | corecount: 8
[2026-01-12 18:59:10] 2026-01-12 17:58:22,244 | INFO     | event service: False
[2026-01-12 18:59:10] 2026-01-12 17:58:22,244 | INFO     | sizes: {0: 2283939, 1: 2284138, 12: 2284138, 23: 2284166, 33: 2284194, 44: 2284250, 55: 2284406, 65: 2284434, 76: 2284462, 87: 2284518, 98: 2284546, 106: 2285116, 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,244 | INFO     | --------------------------------------------------
[2026-01-12 18:59:10] 2026-01-12 17:58:22,244 | INFO     | 
[2026-01-12 18:59:10] 2026-01-12 17:58:22,244 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,823 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,824 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,825 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 18:59:10] 2026-01-12 17:58:22,825 | INFO     | job 6966979467 has completed (purged errors)
[2026-01-12 18:59:10] 2026-01-12 17:58:22,825 | INFO     | overall cleanup function is called
[2026-01-12 18:59:10] 2026-01-12 17:58:23,834 | INFO     | --- collectZombieJob: --- 10, [28086]
[2026-01-12 18:59:10] 2026-01-12 17:58:23,834 | INFO     | zombie collector waiting for pid 28086
[2026-01-12 18:59:10] 2026-01-12 17:58:23,834 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 18:59:10] 2026-01-12 17:58:23,834 | INFO     | collected zombie processes
[2026-01-12 18:59:10] 2026-01-12 17:58:23,835 | INFO     | will attempt to kill all subprocesses of pid=28086
[2026-01-12 18:59:10] 2026-01-12 17:58:23,929 | INFO     | process IDs to be killed: [28086] (in reverse order)
[2026-01-12 18:59:10] 2026-01-12 17:58:24,843 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 18:59:10] 2026-01-12 17:58:24,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 18:59:10] 2026-01-12 17:58:24,845 | INFO     | did not find any defunct processes belonging to 28086
[2026-01-12 18:59:10] 2026-01-12 17:58:24,847 | INFO     | did not find any defunct processes belonging to 28086
[2026-01-12 18:59:10] 2026-01-12 17:58:24,847 | INFO     | ready for new job
[2026-01-12 18:59:10] 2026-01-12 17:58:24,847 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 18:59:10] 2026-01-12 17:58:24,849 | INFO     | ***************************************
[2026-01-12 18:59:10] 2026-01-12 17:58:24,850 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 18:59:10] 2026-01-12 17:58:24,850 | INFO     | ***************************************
[2026-01-12 18:59:10] 2026-01-12 17:58:24,850 | INFO     | 
[2026-01-12 18:59:10] 2026-01-12 17:58:24,851 | INFO     | pilot is running in a VM
[2026-01-12 18:59:10] 2026-01-12 17:58:24,851 | INFO     | architecture information:
[2026-01-12 18:59:10] 2026-01-12 17:58:24,863 | INFO     | executing command: cat /etc/os-release
[2026-01-12 18:59:10] 2026-01-12 17:58:25,030 | INFO     | cat /etc/os-release:
[2026-01-12 18:59:10] NAME="CentOS Linux"
[2026-01-12 18:59:10] VERSION="7 (Core)"
[2026-01-12 18:59:10] ID="centos"
[2026-01-12 18:59:10] ID_LIKE="rhel fedora"
[2026-01-12 18:59:10] VERSION_ID="7"
[2026-01-12 18:59:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 18:59:10] ANSI_COLOR="0;31"
[2026-01-12 18:59:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 18:59:10] HOME_URL="https://www.centos.org/"
[2026-01-12 18:59:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 18:59:10] 
[2026-01-12 18:59:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 18:59:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 18:59:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 18:59:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 18:59:10] 
[2026-01-12 18:59:10] 2026-01-12 17:58:25,031 | INFO     | ***************************************
[2026-01-12 18:59:10] 2026-01-12 17:58:25,534 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-12 18:59:10] 2026-01-12 17:58:25,763 | INFO     | sufficient remaining disk space (496745054208 B)
[2026-01-12 18:59:10] 2026-01-12 17:58:25,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 18:59:10] 2026-01-12 17:58:25,764 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 18:59:10] 2026-01-12 17:58:25,764 | INFO     | update_server=False
[2026-01-12 18:59:10] 2026-01-12 17:58:25,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 18:59:10] 2026-01-12 17:58:25,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 18:59:10] 2026-01-12 17:58:25,819 | INFO     | all data control threads have been joined
[2026-01-12 18:59:10] 2026-01-12 17:58:26,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:59:10] 2026-01-12 17:58:26,645 | INFO     | aborting loop
[2026-01-12 18:59:10] 2026-01-12 17:58:26,770 | INFO     | [job] retrieve thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:26,811 | INFO     | all job control threads have been joined
[2026-01-12 18:59:10] 2026-01-12 17:58:26,825 | INFO     | [data] control thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:26,826 | INFO     | [payload] validate_post thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:26,951 | INFO     | all payload control threads have been joined
[2026-01-12 18:59:10] 2026-01-12 17:58:27,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:59:10] 2026-01-12 17:58:27,530 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,621 | INFO     | [data] copytool_in thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,651 | INFO     | [job] job monitor thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,772 | INFO     | [data] copytool_out thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,817 | INFO     | [job] control thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,907 | INFO     | [payload] failed_post thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,947 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:27,957 | INFO     | [payload] control thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:28,026 | INFO     | [job] validate thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:28,217 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:28,260 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:28,264 | INFO     | [job] queue monitor thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:28,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 18:59:10] 2026-01-12 17:58:32,583 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 18:59:10] 2026-01-12 17:58:54,557 | INFO     | PID=21605 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 18:59:10] 2026-01-12 17:58:54,557 | INFO     | .. there are 2 such processes running
[2026-01-12 18:59:10] 2026-01-12 17:58:54,559 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 18:59:10] 2026-01-12 17:58:54,559 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 18:59:10] 2026-01-12 17:58:54,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 18:59:10] 2026-01-12 17:59:00,292 | INFO     | [monitor] cgroup control has ended
[2026-01-12 18:59:10] 2026-01-12 17:59:00,493 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140688600692544)>', '<ExcThread(monitor, started 140688029120256)>']
[2026-01-12 18:59:10] 2026-01-12 17:59:00,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 18:59:10] 2026-01-12 17:59:00,595 | INFO     | [monitor] control thread has ended
[2026-01-12 18:59:10] 2026-01-12 17:59:05,519 | INFO     | all workflow threads have been joined
[2026-01-12 18:59:10] 2026-01-12 17:59:05,519 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 18:59:10] 2026-01-12 17:59:05,519 | INFO     | traces error code: 0
[2026-01-12 18:59:10] 2026-01-12 17:59:05,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 18:59:10] 2026-01-12 17:59:05,878 [wrapper] ==== pilot stdout END ====
[2026-01-12 18:59:10] 2026-01-12 17:59:05,977 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 18:59:10] 2026-01-12 17:59:06,084 [wrapper] pilotpid: 21605
[2026-01-12 18:59:10] 2026-01-12 17:59:06,194 [wrapper] Pilot exit status: 0
[2026-01-12 18:59:10] 2026-01-12 17:59:06,700 [wrapper] pandaids: 6966979467
[2026-01-12 18:59:10] 2026-01-12 17:59:07,672 [wrapper] cleanup supervisor_pilot 19825 21606
[2026-01-12 18:59:10] 2026-01-12 17:59:07,792 [wrapper] Test setup, not cleaning
[2026-01-12 18:59:10] 2026-01-12 17:59:07,876 [wrapper] apfmon messages muted
[2026-01-12 18:59:10] 2026-01-12 17:59:07,975 [wrapper] ==== wrapper stdout END ====
[2026-01-12 18:59:10] 2026-01-12 17:59:08,081 [wrapper] ==== wrapper stderr END ====
[2026-01-12 18:59:10]  *** Error codes and diagnostics ***
[2026-01-12 18:59:10]     "exeErrorCode": 0,
[2026-01-12 18:59:10]     "exeErrorDiag": "",
[2026-01-12 18:59:10]     "pilotErrorCode": 0,
[2026-01-12 18:59:10]     "pilotErrorDiag": "",
[2026-01-12 18:59:10]  *** Listing of results directory ***
[2026-01-12 18:59:10] total 480620
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-12 18:59:10] -rwx------. 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc       100 Jan 12 14:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 18:59:10] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 14:50 run_atlas
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc       105 Jan 12 14:50 job.xml
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc      6390 Jan 12 14:50 init_data.xml
[2026-01-12 18:59:10] -rw-r--r--. 2 boinc boinc 288214797 Jan 12 14:50 EVNT.48188454._000010.pool.root.1
[2026-01-12 18:59:10] -rw-r--r--. 2 boinc boinc     15847 Jan 12 14:50 start_atlas.sh
[2026-01-12 18:59:10] drwxrwx--x. 2 boinc boinc        68 Jan 12 14:50 shared
[2026-01-12 18:59:10] -rw-r--r--. 2 boinc boinc    592406 Jan 12 14:50 input.tar.gz
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc         0 Jan 12 14:50 boinc_lockfile
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc      2619 Jan 12 14:51 pandaJob.out
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc    986112 Jan 12 14:55 agis_schedconf.cvmfs.json
[2026-01-12 18:59:10] drwx------. 5 boinc boinc      4096 Jan 12 14:55 pilot3
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc 195210933 Jan 12 18:54 HITS.48188456._000228.pool.root.1
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc       531 Jan 12 18:55 boinc_task_state.xml
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc      1016 Jan 12 18:56 memory_monitor_summary.json
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc   1516240 Jan 12 18:56 agis_ddmendpoints.agis.ALL.json
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc    476493 Jan 12 18:56 log.48188456._000228.job.log.tgz.1
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc      7772 Jan 12 18:58 heartbeat.json
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc      8192 Jan 12 18:58 boinc_mmap_file
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc        28 Jan 12 18:58 wrapper_checkpoint.txt
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc        95 Jan 12 18:58 pilot_heartbeat.json
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc      4884 Jan 12 18:59 pilotlog.txt
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc   1943693 Jan 12 18:59 log.48188456._000228.job.log.1
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc       357 Jan 12 18:59 output.list
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc       620 Jan 12 18:59 runtime_log
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc   2437120 Jan 12 18:59 result.tar.gz
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc      8817 Jan 12 18:59 runtime_log.err
[2026-01-12 18:59:10] -rw-------. 1 boinc boinc       657 Jan 12 18:59 5t2KDmfaWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEfnKDmlkYs7m.diag
[2026-01-12 18:59:10] -rw-r--r--. 1 boinc boinc     20772 Jan 12 18:59 stderr.txt
[2026-01-12 18:59:11] HITS file was successfully produced:
[2026-01-12 18:59:11] -rw-------. 1 boinc boinc 195210933 Jan 12 18:54 shared/HITS.pool.root.1
[2026-01-12 18:59:11]  *** Contents of shared directory: ***
[2026-01-12 18:59:11] total 475072
[2026-01-12 18:59:11] -rw-r--r--. 2 boinc boinc 288214797 Jan 12 14:50 ATLAS.root_0
[2026-01-12 18:59:11] -rw-r--r--. 2 boinc boinc     15847 Jan 12 14:50 start_atlas.sh
[2026-01-12 18:59:11] -rw-r--r--. 2 boinc boinc    592406 Jan 12 14:50 input.tar.gz
[2026-01-12 18:59:11] -rw-------. 1 boinc boinc 195210933 Jan 12 18:54 HITS.pool.root.1
[2026-01-12 18:59:11] -rw-------. 1 boinc boinc   2437120 Jan 12 18:59 result.tar.gz
18:59:12 (17568): run_atlas exited; CPU time 51053.101691
18:59:12 (17568): called boinc_finish(0)

</stderr_txt>
]]>

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