Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:47:50 (15206): wrapper (7.7.26015): starting
14:47:50 (15206): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 14:47:50] Arguments: --nthreads 8
[2026-01-12 14:47:50] Threads: 8
[2026-01-12 14:47:50] Checking for CVMFS
[2026-01-12 14:47:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 14:47:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 14:47:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 14:47:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 14:47:56] 2.11.2.0 5583 39816 127440 155054 3 11 20784940 25165825 96 130560 0 15574585 99.821 10819272 4360 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 14:47:56] CVMFS is ok
[2026-01-12 14:47:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 14:47:56] Checking for apptainer binary...
[2026-01-12 14:47:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 14:47:56] Running /usr/bin/apptainer --version
[2026-01-12 14:47:56] apptainer version 1.3.2-1.el7
[2026-01-12 14:47:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 14:48:19] cg-vwn382.simple-grid.lan
[2026-01-12 14:48:19] apptainer works
[2026-01-12 14:48:19] Set ATHENA_PROC_NUMBER=8
[2026-01-12 14:48:19] Set ATHENA_CORE_NUMBER=8
[2026-01-12 14:48:19] Starting ATLAS job with PandaID=6963162020
[2026-01-12 14:48:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 20:45:50]  *** The last 200 lines of the pilot log: ***
[2026-01-12 20:45:50] 2026-01-12 19:44:46,912 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-12 20:45:50] 2026-01-12 19:44:46,913 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963162020/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,914 | INFO     | extracted standard info from prmon json
[2026-01-12 20:45:50] 2026-01-12 19:44:46,914 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 20:45:50] 2026-01-12 19:44:46,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 20:45:50] 2026-01-12 19:44:46,915 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 20:45:50] 2026-01-12 19:44:46,915 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 20:45:50] 2026-01-12 19:44:46,922 | INFO     | fitting pss+swap vs Time
[2026-01-12 20:45:50] 2026-01-12 19:44:46,922 | INFO     | sum of square deviations: 11657595320.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,926 | INFO     | sum of deviations: 184765120827.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,926 | INFO     | mean x: 1768236734.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,926 | INFO     | mean y: 2437810.555223881
[2026-01-12 20:45:50] 2026-01-12 19:44:46,926 | INFO     | intersect: -28022936620.459923
[2026-01-12 20:45:50] 2026-01-12 19:44:46,927 | INFO     | chi2: 7.450663993147212
[2026-01-12 20:45:50] 2026-01-12 19:44:46,928 | INFO     | sum of square deviations: 11143362422.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,931 | INFO     | sum of deviations: 203824998650.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,931 | INFO     | mean x: 1768236581.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,931 | INFO     | mean y: 2443383.1303030304
[2026-01-12 20:45:50] 2026-01-12 19:44:46,931 | INFO     | intersect: -32340650664.52291
[2026-01-12 20:45:50] 2026-01-12 19:44:46,932 | INFO     | chi2: 6.721482361887468
[2026-01-12 20:45:50] 2026-01-12 19:44:46,932 | INFO     | current chi2=6.721482361887468 (change=9.786800638579493 %)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,932 | INFO     | right removable region: 329
[2026-01-12 20:45:50] 2026-01-12 19:44:46,933 | INFO     | sum of square deviations: 11143362422.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,936 | INFO     | sum of deviations: 69059798148.50006
[2026-01-12 20:45:50] 2026-01-12 19:44:46,936 | INFO     | mean x: 1768236886.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,936 | INFO     | mean y: 2472103.2696969695
[2026-01-12 20:45:50] 2026-01-12 19:44:46,936 | INFO     | intersect: -10955987096.967466
[2026-01-12 20:45:50] 2026-01-12 19:44:46,936 | INFO     | chi2: 2.7481759887405075
[2026-01-12 20:45:50] 2026-01-12 19:44:46,937 | INFO     | current chi2=2.7481759887405075 (change=63.1150191275817 %)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,937 | INFO     | sum of square deviations: 10644478650.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,940 | INFO     | sum of deviations: -2992569414.9999847
[2026-01-12 20:45:50] 2026-01-12 19:44:46,940 | INFO     | mean x: 1768237039.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,940 | INFO     | mean y: 2494067.806153846
[2026-01-12 20:45:50] 2026-01-12 19:44:46,940 | INFO     | intersect: 499613020.77446437
[2026-01-12 20:45:50] 2026-01-12 19:44:46,941 | INFO     | chi2: 0.8448958932361627
[2026-01-12 20:45:50] 2026-01-12 19:44:46,941 | INFO     | current chi2=0.8448958932361627 (change=69.25612127106243 %)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,942 | INFO     | sum of square deviations: 10160711440.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | sum of deviations: -14286703097.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | mean x: 1768237191.5
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | mean y: 2497623.365625
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | intersect: 2488768384.0396185
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | chi2: 0.7917849959028866
[2026-01-12 20:45:50] 2026-01-12 19:44:46,945 | INFO     | current chi2=0.7917849959028866 (change=6.286087760451525 %)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,946 | INFO     | left removable region: 30
[2026-01-12 20:45:50] 2026-01-12 19:44:46,946 | INFO     | sum of square deviations: 8288713550.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,949 | INFO     | sum of deviations: 3683675990.999998
[2026-01-12 20:45:50] 2026-01-12 19:44:46,949 | INFO     | mean x: 1768237466.0
[2026-01-12 20:45:50] 2026-01-12 19:44:46,949 | INFO     | mean y: 2505434.8963210704
[2026-01-12 20:45:50] 2026-01-12 19:44:46,949 | INFO     | intersect: -783335921.6180291
[2026-01-12 20:45:50] 2026-01-12 19:44:46,949 | INFO     | chi2: 0.005414149823495953
[2026-01-12 20:45:50] 2026-01-12 19:44:46,950 | INFO     | current memory leak: 0.44 B/s (using 299 data points, chi2=0.01)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,950 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-12 20:45:50] 2026-01-12 19:44:46,950 | INFO     | ..............................
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . Timing measurements:
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . get job = 0 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . initial setup = 12 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . payload setup = 166 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . stage-in = 0 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . payload execution = 20603 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . stage-out = 7 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | . log creation = 1 s
[2026-01-12 20:45:50] 2026-01-12 19:44:46,951 | INFO     | ..............................
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | 
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | job summary report
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | --------------------------------------------------
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | PanDA job id: 6963162020
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | task id: 47898826
[2026-01-12 20:45:50] 2026-01-12 19:44:47,531 | INFO     | errors: (none)
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | pilot state: finished 
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | transexitcode: 0
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | exeerrorcode: 0
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | exeerrordiag: 
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | exitcode: 0
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | exitmsg: OK
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | cpuconsumptiontime: 77415 s
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | nevents: 400
[2026-01-12 20:45:50] 2026-01-12 19:44:47,532 | INFO     | neventsw: 0
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | pid: 25699
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | pgrp: 25699
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | corecount: 8
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | event service: False
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | sizes: {0: 2283744, 1: 2283999, 2: 2283999, 12: 2284027, 23: 2284055, 34: 2284083, 44: 2284239, 55: 2284267, 66: 2284295, 77: 2284323, 87: 2284379, 98: 2284687, 10
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | --------------------------------------------------
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | 
[2026-01-12 20:45:50] 2026-01-12 19:44:47,533 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-12 20:45:50] 2026-01-12 19:44:47,898 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,899 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 20:45:50] 2026-01-12 19:44:47,900 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,901 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 20:45:50] 2026-01-12 19:44:47,901 | INFO     | job 6963162020 has completed (purged errors)
[2026-01-12 20:45:50] 2026-01-12 19:44:47,901 | INFO     | overall cleanup function is called
[2026-01-12 20:45:50] 2026-01-12 19:44:48,910 | INFO     | --- collectZombieJob: --- 10, [25699]
[2026-01-12 20:45:50] 2026-01-12 19:44:48,910 | INFO     | zombie collector waiting for pid 25699
[2026-01-12 20:45:50] 2026-01-12 19:44:48,910 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 20:45:50] 2026-01-12 19:44:48,910 | INFO     | collected zombie processes
[2026-01-12 20:45:50] 2026-01-12 19:44:48,910 | INFO     | will attempt to kill all subprocesses of pid=25699
[2026-01-12 20:45:50] 2026-01-12 19:44:48,984 | INFO     | process IDs to be killed: [25699] (in reverse order)
[2026-01-12 20:45:50] 2026-01-12 19:44:49,898 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 20:45:50] 2026-01-12 19:44:49,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 20:45:50] 2026-01-12 19:44:49,901 | INFO     | did not find any defunct processes belonging to 25699
[2026-01-12 20:45:50] 2026-01-12 19:44:49,903 | INFO     | did not find any defunct processes belonging to 25699
[2026-01-12 20:45:50] 2026-01-12 19:44:49,903 | INFO     | ready for new job
[2026-01-12 20:45:50] 2026-01-12 19:44:49,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 20:45:50] 2026-01-12 19:44:49,905 | INFO     | ***************************************
[2026-01-12 20:45:50] 2026-01-12 19:44:49,906 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 20:45:50] 2026-01-12 19:44:49,906 | INFO     | ***************************************
[2026-01-12 20:45:50] 2026-01-12 19:44:49,906 | INFO     | 
[2026-01-12 20:45:50] 2026-01-12 19:44:49,906 | INFO     | pilot is running in a VM
[2026-01-12 20:45:50] 2026-01-12 19:44:49,907 | INFO     | architecture information:
[2026-01-12 20:45:50] 2026-01-12 19:44:49,913 | INFO     | executing command: cat /etc/os-release
[2026-01-12 20:45:50] 2026-01-12 19:44:50,039 | INFO     | cat /etc/os-release:
[2026-01-12 20:45:50] NAME="CentOS Linux"
[2026-01-12 20:45:50] VERSION="7 (Core)"
[2026-01-12 20:45:50] ID="centos"
[2026-01-12 20:45:50] ID_LIKE="rhel fedora"
[2026-01-12 20:45:50] VERSION_ID="7"
[2026-01-12 20:45:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 20:45:50] ANSI_COLOR="0;31"
[2026-01-12 20:45:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 20:45:50] HOME_URL="https://www.centos.org/"
[2026-01-12 20:45:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 20:45:50] 
[2026-01-12 20:45:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 20:45:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 20:45:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 20:45:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 20:45:50] 
[2026-01-12 20:45:50] 2026-01-12 19:44:50,040 | INFO     | ***************************************
[2026-01-12 20:45:50] 2026-01-12 19:44:50,543 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-12 20:45:50] 2026-01-12 19:44:50,650 | INFO     | sufficient remaining disk space (496871931904 B)
[2026-01-12 20:45:50] 2026-01-12 19:44:50,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 20:45:50] 2026-01-12 19:44:50,651 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 20:45:50] 2026-01-12 19:44:50,651 | INFO     | update_server=False
[2026-01-12 20:45:50] 2026-01-12 19:44:50,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 20:45:50] 2026-01-12 19:44:50,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 20:45:50] 2026-01-12 19:44:50,798 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 20:45:50] 2026-01-12 19:44:50,798 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 20:45:50] 2026-01-12 19:44:50,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:45:50] 2026-01-12 19:44:50,798 | INFO     | will abort loop
[2026-01-12 20:45:50] 2026-01-12 19:44:51,249 | INFO     | all data control threads have been joined
[2026-01-12 20:45:50] 2026-01-12 19:44:51,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 20:45:50] 2026-01-12 19:44:51,657 | INFO     | [job] retrieve thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:51,747 | INFO     | [data] copytool_in thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:51,804 | INFO     | [job] job monitor thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:51,826 | INFO     | all job control threads have been joined
[2026-01-12 20:45:50] 2026-01-12 19:44:52,042 | INFO     | all payload control threads have been joined
[2026-01-12 20:45:50] 2026-01-12 19:44:52,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 20:45:50] 2026-01-12 19:44:52,249 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,255 | INFO     | [data] control thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,482 | INFO     | [payload] failed_post thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,595 | INFO     | [payload] validate_post thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,659 | INFO     | [data] copytool_out thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,832 | INFO     | [job] control thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,836 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:52,957 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:53,048 | INFO     | [payload] control thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:53,050 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:53,065 | INFO     | [job] validate thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:53,083 | INFO     | [job] queue monitor thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:44:55,654 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 20:45:50] 2026-01-12 19:45:19,756 | INFO     | PID=19241 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-12 20:45:50] 2026-01-12 19:45:19,756 | INFO     | .. there are 2 such processes running
[2026-01-12 20:45:50] 2026-01-12 19:45:19,757 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 20:45:50] 2026-01-12 19:45:19,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 20:45:50] 2026-01-12 19:45:19,758 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 20:45:50] 2026-01-12 19:45:39,493 | INFO     | [monitor] cgroup control has ended
[2026-01-12 20:45:50] 2026-01-12 19:45:40,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914104297280)>', '<ExcThread(monitor, started 139913366324992)>']
[2026-01-12 20:45:50] 2026-01-12 19:45:40,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 20:45:50] 2026-01-12 19:45:40,884 | INFO     | [monitor] control thread has ended
[2026-01-12 20:45:50] 2026-01-12 19:45:45,844 | INFO     | all workflow threads have been joined
[2026-01-12 20:45:50] 2026-01-12 19:45:45,844 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 20:45:50] 2026-01-12 19:45:45,844 | INFO     | traces error code: 0
[2026-01-12 20:45:50] 2026-01-12 19:45:45,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 20:45:50] 2026-01-12 19:45:46,142 [wrapper] ==== pilot stdout END ====
[2026-01-12 20:45:50] 2026-01-12 19:45:46,228 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 20:45:50] 2026-01-12 19:45:46,338 [wrapper] pilotpid: 19241
[2026-01-12 20:45:50] 2026-01-12 19:45:46,438 [wrapper] Pilot exit status: 0
[2026-01-12 20:45:50] 2026-01-12 19:45:46,792 [wrapper] pandaids: 6963162020
[2026-01-12 20:45:50] 2026-01-12 19:45:47,640 [wrapper] cleanup supervisor_pilot 24902 19242
[2026-01-12 20:45:50] 2026-01-12 19:45:47,678 [wrapper] Test setup, not cleaning
[2026-01-12 20:45:50] 2026-01-12 19:45:47,784 [wrapper] apfmon messages muted
[2026-01-12 20:45:50] 2026-01-12 19:45:47,896 [wrapper] ==== wrapper stdout END ====
[2026-01-12 20:45:50] 2026-01-12 19:45:48,015 [wrapper] ==== wrapper stderr END ====
[2026-01-12 20:45:50]  *** Error codes and diagnostics ***
[2026-01-12 20:45:50]     "exeErrorCode": 0,
[2026-01-12 20:45:50]     "exeErrorDiag": "",
[2026-01-12 20:45:50]     "pilotErrorCode": 0,
[2026-01-12 20:45:50]     "pilotErrorDiag": "",
[2026-01-12 20:45:50]  *** Listing of results directory ***
[2026-01-12 20:45:50] total 439796
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-12 20:45:50] -rwx------. 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc       100 Jan 12 14:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 20:45:50] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 14:47 run_atlas
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc       105 Jan 12 14:47 job.xml
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc 225581833 Jan 12 14:47 EVNT.47898824._001234.pool.root.1
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc      6391 Jan 12 14:47 init_data.xml
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc     15847 Jan 12 14:47 start_atlas.sh
[2026-01-12 20:45:50] drwxrwx--x. 2 boinc boinc        68 Jan 12 14:47 shared
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc    592394 Jan 12 14:47 input.tar.gz
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc         0 Jan 12 14:47 boinc_lockfile
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc      2519 Jan 12 14:48 pandaJob.out
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc    986112 Jan 12 14:52 agis_schedconf.cvmfs.json
[2026-01-12 20:45:50] drwx------. 5 boinc boinc      4096 Jan 12 14:53 pilot3
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc 214135148 Jan 12 20:41 HITS.47898826._033647.pool.root.1
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc       531 Jan 12 20:41 boinc_task_state.xml
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc      1013 Jan 12 20:42 memory_monitor_summary.json
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc   1516240 Jan 12 20:42 agis_ddmendpoints.agis.ALL.json
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc    559147 Jan 12 20:42 log.47898826._033647.job.log.tgz.1
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc      7787 Jan 12 20:44 heartbeat.json
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc        95 Jan 12 20:45 pilot_heartbeat.json
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc      8192 Jan 12 20:45 boinc_mmap_file
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc        28 Jan 12 20:45 wrapper_checkpoint.txt
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc      5071 Jan 12 20:45 pilotlog.txt
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc   2807132 Jan 12 20:45 log.47898826._033647.job.log.1
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc       357 Jan 12 20:45 output.list
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc       620 Jan 12 20:45 runtime_log
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc   3389440 Jan 12 20:45 result.tar.gz
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc      8833 Jan 12 20:45 runtime_log.err
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc       657 Jan 12 20:45 fypLDmT1Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhKgKDmxQioem.diag
[2026-01-12 20:45:50] -rw-r--r--. 1 boinc boinc     20790 Jan 12 20:45 stderr.txt
[2026-01-12 20:45:50] HITS file was successfully produced:
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc 214135148 Jan 12 20:41 shared/HITS.pool.root.1
[2026-01-12 20:45:50]  *** Contents of shared directory: ***
[2026-01-12 20:45:50] total 433324
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc 225581833 Jan 12 14:47 ATLAS.root_0
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc     15847 Jan 12 14:47 start_atlas.sh
[2026-01-12 20:45:50] -rw-r--r--. 2 boinc boinc    592394 Jan 12 14:47 input.tar.gz
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc 214135148 Jan 12 20:41 HITS.pool.root.1
[2026-01-12 20:45:50] -rw-------. 1 boinc boinc   3389440 Jan 12 20:45 result.tar.gz
20:45:52 (15206): run_atlas exited; CPU time 77625.437919
20:45:52 (15206): called boinc_finish(0)

</stderr_txt>
]]>

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