Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:01:03 (731048): wrapper (7.7.26015): starting
10:01:03 (731048): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 10:01:03] Arguments: --nthreads 8
[2026-01-12 10:01:03] Threads: 8
[2026-01-12 10:01:03] Checking for CVMFS
[2026-01-12 10:01:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 10:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 10:01:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 10:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 10:01:06] 2.13.3.0 12004 97837 412392 155055 0 141 17077284 32935937 19937 16776704 0 370310657 99.520 479990020 33671 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-12 10:01:06] CVMFS is ok
[2026-01-12 10:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 10:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 10:01:06] Further information can be found at the LHC@home message board.
[2026-01-12 10:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 10:01:06] Checking for apptainer binary...
[2026-01-12 10:01:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 10:01:06] Running /usr/bin/apptainer --version
[2026-01-12 10:01:06] apptainer version 1.4.5-2.el9
[2026-01-12 10:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 10:01:06] c6-12-29-4.aglt2.org
[2026-01-12 10:01:06] apptainer works
[2026-01-12 10:01:06] Set ATHENA_PROC_NUMBER=8
[2026-01-12 10:01:06] Set ATHENA_CORE_NUMBER=8
[2026-01-12 10:01:07] Starting ATLAS job with PandaID=6967001019
[2026-01-12 10:01:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 16:40:00]  *** The last 200 lines of the pilot log: ***
[2026-01-12 16:40:00] 2026-01-12 21:39:19,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 16:40:00] 2026-01-12 21:39:21,306 | INFO     | time since job start (23834s) is within the limit (349056.0s)
[2026-01-12 16:40:00] 2026-01-12 21:39:22,316 | INFO     | monitor loop #1451: job 0:6967001019 is in state 'finished'
[2026-01-12 16:40:00] 2026-01-12 21:39:22,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 16:40:00] 2026-01-12 21:39:23,313 | INFO     | time since job start (23836s) is within the limit (349056.0s)
[2026-01-12 16:40:00] 2026-01-12 21:39:24,826 | INFO     | monitor loop #1452: job 0:6967001019 is in state 'finished'
[2026-01-12 16:40:00] 2026-01-12 21:39:24,826 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,256 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-12 16:40:00] 2026-01-12 21:39:25,269 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2669.0022916666667
[2026-01-12 16:40:00] 2026-01-12 21:39:25,285 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6967001019/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,286 | INFO     | extracted standard info from prmon json
[2026-01-12 16:40:00] 2026-01-12 21:39:25,286 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 16:40:00] 2026-01-12 21:39:25,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 16:40:00] 2026-01-12 21:39:25,286 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 16:40:00] 2026-01-12 21:39:25,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 16:40:00] 2026-01-12 21:39:25,293 | INFO     | fitting pss+swap vs Time
[2026-01-12 16:40:00] 2026-01-12 21:39:25,294 | INFO     | sum of square deviations: 18112460285.628826
[2026-01-12 16:40:00] 2026-01-12 21:39:25,297 | INFO     | sum of deviations: 90053980000.20612
[2026-01-12 16:40:00] 2026-01-12 21:39:25,297 | INFO     | mean x: 1768242061.969072
[2026-01-12 16:40:00] 2026-01-12 21:39:25,297 | INFO     | mean y: 2591402.600515464
[2026-01-12 16:40:00] 2026-01-12 21:39:25,297 | INFO     | intersect: -8788993659.448257
[2026-01-12 16:40:00] 2026-01-12 21:39:25,298 | INFO     | chi2: 3.478903399016475
[2026-01-12 16:40:00] 2026-01-12 21:39:25,299 | INFO     | sum of square deviations: 17421213101.342022
[2026-01-12 16:40:00] 2026-01-12 21:39:25,302 | INFO     | sum of deviations: 114026399812.1097
[2026-01-12 16:40:00] 2026-01-12 21:39:25,302 | INFO     | mean x: 1768241909.4673629
[2026-01-12 16:40:00] 2026-01-12 21:39:25,302 | INFO     | mean y: 2596633.088772846
[2026-01-12 16:40:00] 2026-01-12 21:39:25,303 | INFO     | intersect: -11571009507.916513
[2026-01-12 16:40:00] 2026-01-12 21:39:25,303 | INFO     | chi2: 2.7992608798471443
[2026-01-12 16:40:00] 2026-01-12 21:39:25,303 | INFO     | current chi2=2.7992608798471443 (change=19.53611357422207 %)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,303 | INFO     | right removable region: 382
[2026-01-12 16:40:00] 2026-01-12 21:39:25,304 | INFO     | sum of square deviations: 17421173209.514317
[2026-01-12 16:40:00] 2026-01-12 21:39:25,307 | INFO     | sum of deviations: -10019753309.908615
[2026-01-12 16:40:00] 2026-01-12 21:39:25,307 | INFO     | mean x: 1768242214.475196
[2026-01-12 16:40:00] 2026-01-12 21:39:25,307 | INFO     | mean y: 2613421.1148825064
[2026-01-12 16:40:00] 2026-01-12 21:39:25,307 | INFO     | intersect: 1019614432.9372041
[2026-01-12 16:40:00] 2026-01-12 21:39:25,308 | INFO     | chi2: 0.997697035818703
[2026-01-12 16:40:00] 2026-01-12 21:39:25,308 | INFO     | current chi2=0.997697035818703 (change=71.32150791824908 %)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,309 | INFO     | sum of square deviations: 16747723661.83079
[2026-01-12 16:40:00] 2026-01-12 21:39:25,312 | INFO     | sum of deviations: -33665139464.074074
[2026-01-12 16:40:00] 2026-01-12 21:39:25,312 | INFO     | mean x: 1768242366.978836
[2026-01-12 16:40:00] 2026-01-12 21:39:25,312 | INFO     | mean y: 2618771.7407407407
[2026-01-12 16:40:00] 2026-01-12 21:39:25,312 | INFO     | intersect: 3557019781.2520003
[2026-01-12 16:40:00] 2026-01-12 21:39:25,313 | INFO     | chi2: 0.8637924730324349
[2026-01-12 16:40:00] 2026-01-12 21:39:25,313 | INFO     | current chi2=0.8637924730324349 (change=13.421365201951005 %)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,313 | INFO     | left removable region: 20
[2026-01-12 16:40:00] 2026-01-12 21:39:25,313 | INFO     | sum of square deviations: 14709725062.930927
[2026-01-12 16:40:00] 2026-01-12 21:39:25,316 | INFO     | sum of deviations: -32722169864.27625
[2026-01-12 16:40:00] 2026-01-12 21:39:25,316 | INFO     | mean x: 1768242488.986188
[2026-01-12 16:40:00] 2026-01-12 21:39:25,317 | INFO     | mean y: 2630251.9447513814
[2026-01-12 16:40:00] 2026-01-12 21:39:25,317 | INFO     | intersect: 3936132124.909592
[2026-01-12 16:40:00] 2026-01-12 21:39:25,317 | INFO     | chi2: 0.03055263379935193
[2026-01-12 16:40:00] 2026-01-12 21:39:25,317 | INFO     | current memory leak: -2.22 B/s (using 362 data points, chi2=0.03)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | could have reported an average CPU frequency of 2650 MHz (16 samples)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | ..............................
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | . Timing measurements:
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | . get job = 0 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | . initial setup = 8 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | . payload setup = 37 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,318 | INFO     | . stage-in = 0 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,319 | INFO     | . payload execution = 23697 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,319 | INFO     | . stage-out = 4 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,319 | INFO     | . log creation = 0 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,319 | INFO     | ..............................
[2026-01-12 16:40:00] 2026-01-12 21:39:25,326 | INFO     | time since job start (23838s) is within the limit (349056.0s)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | job summary report
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | --------------------------------------------------
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | PanDA job id: 6967001019
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | task id: 48188564
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | errors: (none)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,408 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | pilot state: finished 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | transexitcode: 0
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | exeerrorcode: 0
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | exeerrordiag: 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | exitcode: 0
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | exitmsg: OK
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | cpuconsumptiontime: 60054 s
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | nevents: 400
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | neventsw: 0
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | pid: 745449
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | pgrp: 745449
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | corecount: 8
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | event service: False
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | sizes: {0: 2283902, 1: 2283958, 2: 2284014, 3: 2284213, 14: 2284213, 25: 2284241, 31: 2284659, 36: 2284687, 23738: 2319470, 23743: 2328468, 23744: 2328524, 23773: 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | --------------------------------------------------
[2026-01-12 16:40:00] 2026-01-12 21:39:25,409 | INFO     | 
[2026-01-12 16:40:00] 2026-01-12 21:39:25,410 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-12 16:40:00] 2026-01-12 21:39:25,480 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | job 6967001019 has completed (purged errors)
[2026-01-12 16:40:00] 2026-01-12 21:39:25,482 | INFO     | overall cleanup function is called
[2026-01-12 16:40:00] 2026-01-12 21:39:26,541 | INFO     | --- collectZombieJob: --- 10, [745449]
[2026-01-12 16:40:00] 2026-01-12 21:39:26,541 | INFO     | zombie collector waiting for pid 745449
[2026-01-12 16:40:00] 2026-01-12 21:39:26,542 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 16:40:00] 2026-01-12 21:39:26,542 | INFO     | collected zombie processes
[2026-01-12 16:40:00] 2026-01-12 21:39:26,542 | INFO     | will attempt to kill all subprocesses of pid=745449
[2026-01-12 16:40:00] 2026-01-12 21:39:27,952 | INFO     | process IDs to be killed: [745449] (in reverse order)
[2026-01-12 16:40:00] 2026-01-12 21:39:28,192 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 16:40:00] 2026-01-12 21:39:28,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 16:40:00] 2026-01-12 21:39:28,267 | INFO     | did not find any defunct processes belonging to 745449
[2026-01-12 16:40:00] 2026-01-12 21:39:28,376 | INFO     | did not find any defunct processes belonging to 745449
[2026-01-12 16:40:00] 2026-01-12 21:39:28,377 | INFO     | ready for new job
[2026-01-12 16:40:00] 2026-01-12 21:39:28,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 16:40:00] 2026-01-12 21:39:28,401 | INFO     | ***************************************
[2026-01-12 16:40:00] 2026-01-12 21:39:28,401 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 16:40:00] 2026-01-12 21:39:28,401 | INFO     | ***************************************
[2026-01-12 16:40:00] 2026-01-12 21:39:28,401 | INFO     | 
[2026-01-12 16:40:00] 2026-01-12 21:39:28,432 | INFO     | architecture information:
[2026-01-12 16:40:00] 2026-01-12 21:39:28,438 | INFO     | executing command: cat /etc/os-release
[2026-01-12 16:40:00] 2026-01-12 21:39:28,578 | INFO     | cat /etc/os-release:
[2026-01-12 16:40:00] NAME="CentOS Linux"
[2026-01-12 16:40:00] VERSION="7 (Core)"
[2026-01-12 16:40:00] ID="centos"
[2026-01-12 16:40:00] ID_LIKE="rhel fedora"
[2026-01-12 16:40:00] VERSION_ID="7"
[2026-01-12 16:40:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 16:40:00] ANSI_COLOR="0;31"
[2026-01-12 16:40:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 16:40:00] HOME_URL="https://www.centos.org/"
[2026-01-12 16:40:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 16:40:00] 
[2026-01-12 16:40:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 16:40:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 16:40:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 16:40:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 16:40:00] 
[2026-01-12 16:40:00] 2026-01-12 21:39:28,578 | INFO     | ***************************************
[2026-01-12 16:40:00] 2026-01-12 21:39:29,080 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-12 16:40:00] 2026-01-12 21:39:29,133 | INFO     | sufficient remaining disk space (91260715008 B)
[2026-01-12 16:40:00] 2026-01-12 21:39:29,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 16:40:00] 2026-01-12 21:39:29,133 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 16:40:00] 2026-01-12 21:39:29,133 | INFO     | update_server=False
[2026-01-12 16:40:00] 2026-01-12 21:39:29,133 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 16:40:00] 2026-01-12 21:39:29,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 16:40:00] 2026-01-12 21:39:29,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 16:40:00] 2026-01-12 21:39:29,134 | INFO     | aborting loop
[2026-01-12 16:40:00] 2026-01-12 21:39:29,135 | INFO     | all payload control threads have been joined
[2026-01-12 16:40:00] 2026-01-12 21:39:29,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 16:40:00] 2026-01-12 21:39:29,505 | INFO     | all job control threads have been joined
[2026-01-12 16:40:00] 2026-01-12 21:39:29,622 | INFO     | all data control threads have been joined
[2026-01-12 16:40:00] 2026-01-12 21:39:30,138 | INFO     | [job] retrieve thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,140 | INFO     | [job] job monitor thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,142 | INFO     | [payload] control thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,147 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,205 | INFO     | [payload] validate_post thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,220 | INFO     | [data] copytool_in thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,239 | INFO     | [payload] failed_post thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,267 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,511 | INFO     | [job] control thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 16:40:00] 2026-01-12 21:39:30,629 | INFO     | [data] control thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,845 | INFO     | [job] validate thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:30,933 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:31,143 | INFO     | [data] copytool_out thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:31,545 | INFO     | [job] queue monitor thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:33,175 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:40,087 | INFO     | job.realtimelogging is not enabled
[2026-01-12 16:40:00] 2026-01-12 21:39:41,093 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 16:40:00] 2026-01-12 21:39:49,327 | INFO     | [monitor] cgroup control has ended
[2026-01-12 16:40:00] 2026-01-12 21:39:51,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226156644160)>', '<ExcThread(monitor, started 140225447720704)>']
[2026-01-12 16:40:00] 2026-01-12 21:39:56,168 | INFO     | all workflow threads have been joined
[2026-01-12 16:40:00] 2026-01-12 21:39:56,172 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 16:40:00] 2026-01-12 21:39:56,173 | INFO     | traces error code: 0
[2026-01-12 16:40:00] 2026-01-12 21:39:56,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 16:40:00] 2026-01-12 21:39:59,355 | INFO     | PID=736267 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | INFO     | .. there are 30 such processes running
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 16:40:00] 2026-01-12 21:39:59,356 | INFO     | [monitor] control thread has ended
[2026-01-12 16:40:00] 2026-01-12 21:39:59,893 [wrapper] ==== pilot stdout END ====
[2026-01-12 16:40:00] 2026-01-12 21:39:59,938 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 16:40:00] 2026-01-12 21:39:59,975 [wrapper] pilotpid: 736267
[2026-01-12 16:40:00] 2026-01-12 21:39:59,992 [wrapper] Pilot exit status: 0
[2026-01-12 16:40:00] 2026-01-12 21:40:00,076 [wrapper] pandaids: 6967001019
[2026-01-12 16:40:00] 2026-01-12 21:40:00,378 [wrapper] cleanup supervisor_pilot 2335805 736268
[2026-01-12 16:40:00] 2026-01-12 21:40:00,393 [wrapper] Test setup, not cleaning
[2026-01-12 16:40:00] 2026-01-12 21:40:00,409 [wrapper] apfmon messages muted
[2026-01-12 16:40:00] 2026-01-12 21:40:00,433 [wrapper] ==== wrapper stdout END ====
[2026-01-12 16:40:00] 2026-01-12 21:40:00,459 [wrapper] ==== wrapper stderr END ====
[2026-01-12 16:40:00]  *** Error codes and diagnostics ***
[2026-01-12 16:40:00]     "exeErrorCode": 0,
[2026-01-12 16:40:00]     "exeErrorDiag": "",
[2026-01-12 16:40:00]     "pilotErrorCode": 0,
[2026-01-12 16:40:00]     "pilotErrorDiag": "",
[2026-01-12 16:40:00]  *** Listing of results directory ***
[2026-01-12 16:40:00] total 602044
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas    579449 Jan 12 08:15 pilot3.tar.gz
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas      5112 Jan 12 08:24 queuedata.json
[2026-01-12 16:40:00] -rwx------. 1 boincer umatlas     36322 Jan 12 08:28 runpilot2-wrapper.sh
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas       100 Jan 12 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 16:40:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 10:01 run_atlas
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas       105 Jan 12 10:01 job.xml
[2026-01-12 16:40:00] -rw-r--r--. 2 boincer umatlas 318421750 Jan 12 10:01 EVNT.48188559._000005.pool.root.1
[2026-01-12 16:40:00] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 10:01 start_atlas.sh
[2026-01-12 16:40:00] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 10:01 shared
[2026-01-12 16:40:00] -rw-r--r--. 2 boincer umatlas    592406 Jan 12 10:01 input.tar.gz
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas         0 Jan 12 10:01 boinc_lockfile
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas      2633 Jan 12 10:01 pandaJob.out
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas        57 Jan 12 10:01 setup.sh.local
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas    986112 Jan 12 10:02 agis_schedconf.cvmfs.json
[2026-01-12 16:40:00] drwx------. 5 boincer umatlas      4096 Jan 12 10:02 pilot3
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas      6879 Jan 12 16:29 init_data.xml
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas 286997208 Jan 12 16:37 HITS.48188564._000107.pool.root.1
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas       531 Jan 12 16:37 boinc_task_state.xml
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas      1042 Jan 12 16:38 memory_monitor_summary.json
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas   1516240 Jan 12 16:38 agis_ddmendpoints.agis.ALL.json
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas    617071 Jan 12 16:38 log.48188564._000107.job.log.tgz.1
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas        95 Jan 12 16:39 pilot_heartbeat.json
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas      7821 Jan 12 16:39 heartbeat.json
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas       822 Jan 12 16:39 pilotlog.txt
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 16:39 boinc_mmap_file
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas        28 Jan 12 16:40 wrapper_checkpoint.txt
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas   2968131 Jan 12 16:40 log.48188564._000107.job.log.1
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas       357 Jan 12 16:40 output.list
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas       620 Jan 12 16:40 runtime_log
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas   3604480 Jan 12 16:40 result.tar.gz
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas      9353 Jan 12 16:40 runtime_log.err
[2026-01-12 16:40:00] -rw-------. 1 boincer umatlas       659 Jan 12 16:40 0BcLDmp8Wz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOhnKDmqImYRn.diag
[2026-01-12 16:40:00] -rw-r--r--. 1 boincer umatlas     21426 Jan 12 16:40 stderr.txt
[2026-01-12 16:40:01] HITS file was successfully produced:
[2026-01-12 16:40:01] -rw-------. 1 boincer umatlas 286997208 Jan 12 16:37 shared/HITS.pool.root.1
[2026-01-12 16:40:01]  *** Contents of shared directory: ***
[2026-01-12 16:40:01] total 595352
[2026-01-12 16:40:01] -rw-r--r--. 2 boincer umatlas 318421750 Jan 12 10:01 ATLAS.root_0
[2026-01-12 16:40:01] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 10:01 start_atlas.sh
[2026-01-12 16:40:01] -rw-r--r--. 2 boincer umatlas    592406 Jan 12 10:01 input.tar.gz
[2026-01-12 16:40:01] -rw-------. 1 boincer umatlas 286997208 Jan 12 16:37 HITS.pool.root.1
[2026-01-12 16:40:01] -rw-------. 1 boincer umatlas   3604480 Jan 12 16:40 result.tar.gz
16:40:02 (731048): run_atlas exited; CPU time 61053.091932
16:40:02 (731048): called boinc_finish(0)

</stderr_txt>
]]>

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