Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:20:33 (3512547): wrapper (7.7.26015): starting
17:20:33 (3512547): wrapper: running run_atlas (--nthreads 3)
[2026-01-12 17:20:33] Arguments: --nthreads 3
[2026-01-12 17:20:33] Threads: 3
[2026-01-12 17:20:33] Checking for CVMFS
[2026-01-12 17:20:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 17:20:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 17:20:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 17:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 17:20:33] 2.9.2.0 3457400 187 46472 155059 1 56 13014463 36864001 0 130560 0 142532 99.980 9679 3760 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 17:20:33] CVMFS is ok
[2026-01-12 17:20:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 17:20:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 17:20:33] Further information can be found at the LHC@home message board.
[2026-01-12 17:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 17:20:33] Checking for apptainer binary...
[2026-01-12 17:20:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 17:20:33] Running /usr/bin/apptainer --version
[2026-01-12 17:20:33] apptainer version 1.4.1-1.1
[2026-01-12 17:20:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 17:20:33] cosA121a
[2026-01-12 17:20:33] apptainer works
[2026-01-12 17:20:33] Set ATHENA_PROC_NUMBER=3
[2026-01-12 17:20:33] Set ATHENA_CORE_NUMBER=3
[2026-01-12 17:20:33] Starting ATLAS job with PandaID=6966979288
[2026-01-12 17:20:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 18:36:49]  *** The last 200 lines of the pilot log: ***
[2026-01-12 18:36:49]  status=None
[2026-01-12 18:36:49]  status_code=0
[2026-01-12 18:36:49]  storage_token=
[2026-01-12 18:36:49]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6966979288/log.48188456._000049.job.log.tgz.1
[2026-01-12 18:36:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/e2/log.48188456._000049.job.log.tgz.1
[2026-01-12 18:36:49]  workdir=None
[2026-01-12 18:36:49] ]
[2026-01-12 18:36:49] 2026-01-12 17:36:00,681 | INFO     | transferring file log.48188456._000049.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6966979288/log.48188456._000049.job.log.tgz.1 to /local/data/boinc/
[2026-01-12 18:36:49] 2026-01-12 17:36:00,681 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6966979288/log.48188456._000049.job.log.tgz.1 /local/data/boinc/slots/0/log.48188456._0000
[2026-01-12 18:36:49] 2026-01-12 17:36:00,694 | INFO     | adding to output.list: log.48188456._000049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/e2/log.48188456._000049.job.log.tg
[2026-01-12 18:36:49] 2026-01-12 17:36:00,694 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-12 18:36:49] 2026-01-12 17:36:00,694 | INFO     | summary of transferred files:
[2026-01-12 18:36:49] 2026-01-12 17:36:00,694 | INFO     |  -- lfn=log.48188456._000049.job.log.tgz.1, status_code=0, status=transferred
[2026-01-12 18:36:49] 2026-01-12 17:36:00,694 | INFO     | stage-out finished correctly
[2026-01-12 18:36:49] 2026-01-12 17:36:00,718 | INFO     | monitor loop #348: job 0:6966979288 is in state 'finished'
[2026-01-12 18:36:49] 2026-01-12 17:36:00,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 18:36:49] 2026-01-12 17:36:01,385 | INFO     | time since job start (4522s) is within the limit (349056.0s)
[2026-01-12 18:36:49] 2026-01-12 17:36:02,539 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-12 18:36:49] 2026-01-12 17:36:03,229 | INFO     | monitor loop #349: job 0:6966979288 is in state 'finished'
[2026-01-12 18:36:49] 2026-01-12 17:36:03,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 18:36:49] 2026-01-12 17:36:03,388 | INFO     | time since job start (4524s) is within the limit (349056.0s)
[2026-01-12 18:36:49] 2026-01-12 17:36:03,650 | INFO     | job 6966979288 has state=finished
[2026-01-12 18:36:49] 2026-01-12 17:36:03,650 | INFO     | preparing for final server update for job 6966979288 in state='finished'
[2026-01-12 18:36:49] 2026-01-12 17:36:03,651 | INFO     | this job has now completed (state=finished)
[2026-01-12 18:36:49] 2026-01-12 17:36:03,651 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-12 18:36:49] 2026-01-12 17:36:03,651 | INFO     | log transfer has been attempted: DONE
[2026-01-12 18:36:49] 2026-01-12 17:36:03,651 | INFO     | job 6966979288 has finished - writing final server update
[2026-01-12 18:36:49] 2026-01-12 17:36:03,651 | INFO     | total number of processed events: 400 (read)
[2026-01-12 18:36:49] 2026-01-12 17:36:03,652 | INFO     | executing command: lscpu
[2026-01-12 18:36:49] 2026-01-12 17:36:03,667 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-12 18:36:49] 2026-01-12 17:36:05,395 | INFO     | time since job start (4526s) is within the limit (349056.0s)
[2026-01-12 18:36:49] 2026-01-12 17:36:05,732 | INFO     | monitor loop #350: job 0:6966979288 is in state 'finished'
[2026-01-12 18:36:49] 2026-01-12 17:36:05,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 18:36:49] 2026-01-12 17:36:07,400 | INFO     | time since job start (4528s) is within the limit (349056.0s)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,235 | INFO     | monitor loop #351: job 0:6966979288 is in state 'finished'
[2026-01-12 18:36:49] 2026-01-12 17:36:08,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,717 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 18:36:49] 2026-01-12 17:36:08,719 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3539.966833333334
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6966979288/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | INFO     | extracted standard info from prmon json
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 18:36:49] 2026-01-12 17:36:08,720 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | fitting pss+swap vs Time
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | sum of square deviations: 93240818.0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | sum of deviations: -9897794547.000002
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | mean x: 1768237177.0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | mean y: 2492097.432835821
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | intersect: 187706210959.20084
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | chi2: 0.050368909697016365
[2026-01-12 18:36:49] 2026-01-12 17:36:08,721 | INFO     | current memory leak: -106.15 B/s (using 67 data points, chi2=0.05)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | could have reported an average CPU frequency of 3851 MHz (6 samples)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | ..............................
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . Timing measurements:
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . get job = 0 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . initial setup = 1 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . payload setup = 3 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . stage-in = 0 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . payload execution = 4501 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . stage-out = 0 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | . log creation = 0 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,722 | INFO     | ..............................
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | 
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | job summary report
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | --------------------------------------------------
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | PanDA job id: 6966979288
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | task id: 48188456
[2026-01-12 18:36:49] 2026-01-12 17:36:08,752 | INFO     | errors: (none)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | pilot state: finished 
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | transexitcode: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | exeerrorcode: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | exeerrordiag: 
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | exitcode: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | exitmsg: OK
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | cpuconsumptiontime: 12866 s
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | nevents: 400
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | neventsw: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | pid: 3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | pgrp: 3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | corecount: 3
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | event service: False
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | sizes: {0: 2283940, 1: 2284139, 3: 2284401, 11: 2284429, 4508: 2319741, 4510: 2319741, 4516: 2320063}
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | --------------------------------------------------
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | 
[2026-01-12 18:36:49] 2026-01-12 17:36:08,753 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,764 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,765 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 18:36:49] 2026-01-12 17:36:08,765 | INFO     | job 6966979288 has completed (purged errors)
[2026-01-12 18:36:49] 2026-01-12 17:36:08,765 | INFO     | overall cleanup function is called
[2026-01-12 18:36:49] 2026-01-12 17:36:09,770 | INFO     | --- collectZombieJob: --- 10, [3522716]
[2026-01-12 18:36:49] 2026-01-12 17:36:09,770 | INFO     | zombie collector waiting for pid 3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:09,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 18:36:49] 2026-01-12 17:36:09,770 | INFO     | collected zombie processes
[2026-01-12 18:36:49] 2026-01-12 17:36:09,770 | INFO     | will attempt to kill all subprocesses of pid=3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:09,821 | INFO     | process IDs to be killed: [3522716] (in reverse order)
[2026-01-12 18:36:49] 2026-01-12 17:36:09,847 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 18:36:49] 2026-01-12 17:36:09,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 18:36:49] 2026-01-12 17:36:09,849 | INFO     | did not find any defunct processes belonging to 3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | did not find any defunct processes belonging to 3522716
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | ready for new job
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | ***************************************
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | ***************************************
[2026-01-12 18:36:49] 2026-01-12 17:36:09,851 | INFO     | 
[2026-01-12 18:36:49] 2026-01-12 17:36:09,852 | INFO     | architecture information:
[2026-01-12 18:36:49] 2026-01-12 17:36:09,852 | INFO     | executing command: cat /etc/os-release
[2026-01-12 18:36:49] 2026-01-12 17:36:09,861 | INFO     | cat /etc/os-release:
[2026-01-12 18:36:49] NAME="CentOS Linux"
[2026-01-12 18:36:49] VERSION="7 (Core)"
[2026-01-12 18:36:49] ID="centos"
[2026-01-12 18:36:49] ID_LIKE="rhel fedora"
[2026-01-12 18:36:49] VERSION_ID="7"
[2026-01-12 18:36:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 18:36:49] ANSI_COLOR="0;31"
[2026-01-12 18:36:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 18:36:49] HOME_URL="https://www.centos.org/"
[2026-01-12 18:36:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 18:36:49] 
[2026-01-12 18:36:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 18:36:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 18:36:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 18:36:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 18:36:49] 
[2026-01-12 18:36:49] 2026-01-12 17:36:09,861 | INFO     | ***************************************
[2026-01-12 18:36:49] 2026-01-12 17:36:10,364 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | INFO     | sufficient remaining disk space (348548759552 B)
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | INFO     | update_server=False
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 18:36:49] 2026-01-12 17:36:10,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:36:49] 2026-01-12 17:36:10,395 | INFO     | all job control threads have been joined
[2026-01-12 18:36:49] 2026-01-12 17:36:10,738 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 18:36:49] 2026-01-12 17:36:10,738 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 18:36:49] 2026-01-12 17:36:10,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 18:36:49] 2026-01-12 17:36:10,738 | INFO     | will abort loop
[2026-01-12 18:36:49] 2026-01-12 17:36:11,050 | INFO     | all payload control threads have been joined
[2026-01-12 18:36:49] 2026-01-12 17:36:11,243 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 18:36:49] 2026-01-12 17:36:11,380 | INFO     | [job] retrieve thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:11,381 | INFO     | [job] queue monitor thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:11,398 | INFO     | all data control threads have been joined
[2026-01-12 18:36:49] 2026-01-12 17:36:11,400 | INFO     | [job] control thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:11,559 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:11,743 | INFO     | [job] job monitor thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:11,955 | INFO     | [data] copytool_in thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,006 | INFO     | [payload] failed_post thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,056 | INFO     | [payload] control thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,372 | INFO     | [job] validate thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,403 | INFO     | [data] control thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,433 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,546 | INFO     | [payload] validate_post thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:12,570 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:13,081 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 18:36:49] 2026-01-12 17:36:13,248 | INFO     | [data] copytool_out thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:17,087 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:20,904 | INFO     | job.realtimelogging is not enabled
[2026-01-12 18:36:49] 2026-01-12 17:36:21,910 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 18:36:49] 2026-01-12 17:36:40,480 | INFO     | PID=3516272 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 18:36:49] 2026-01-12 17:36:40,480 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 18:36:49] 2026-01-12 17:36:40,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 18:36:49] 2026-01-12 17:36:40,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 18:36:49] 2026-01-12 17:36:44,648 | INFO     | [monitor] cgroup control has ended
[2026-01-12 18:36:49] 2026-01-12 17:36:44,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793844217664)>', '<ExcThread(monitor, started 139792981415680)>']
[2026-01-12 18:36:49] 2026-01-12 17:36:45,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 18:36:49] 2026-01-12 17:36:45,503 | INFO     | [monitor] control thread has ended
[2026-01-12 18:36:49] 2026-01-12 17:36:49,754 | INFO     | all workflow threads have been joined
[2026-01-12 18:36:49] 2026-01-12 17:36:49,754 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 18:36:49] 2026-01-12 17:36:49,754 | INFO     | traces error code: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:49,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 18:36:49] 2026-01-12 17:36:49,807 [wrapper] ==== pilot stdout END ====
[2026-01-12 18:36:49] 2026-01-12 17:36:49,809 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 18:36:49] 2026-01-12 17:36:49,811 [wrapper] pilotpid: 3516272
[2026-01-12 18:36:49] 2026-01-12 17:36:49,814 [wrapper] Pilot exit status: 0
[2026-01-12 18:36:49] 2026-01-12 17:36:49,829 [wrapper] pandaids: 6966979288
[2026-01-12 18:36:49] 2026-01-12 17:36:49,847 [wrapper] cleanup supervisor_pilot 3536250 3516273
[2026-01-12 18:36:49] 2026-01-12 17:36:49,849 [wrapper] Test setup, not cleaning
[2026-01-12 18:36:49] 2026-01-12 17:36:49,851 [wrapper] apfmon messages muted
[2026-01-12 18:36:49] 2026-01-12 17:36:49,853 [wrapper] ==== wrapper stdout END ====
[2026-01-12 18:36:49] 2026-01-12 17:36:49,856 [wrapper] ==== wrapper stderr END ====
[2026-01-12 18:36:49]  *** Error codes and diagnostics ***
[2026-01-12 18:36:49]     "exeErrorCode": 0,
[2026-01-12 18:36:49]     "exeErrorDiag": "",
[2026-01-12 18:36:49]     "pilotErrorCode": 0,
[2026-01-12 18:36:49]     "pilotErrorDiag": "",
[2026-01-12 18:36:49]  *** Listing of results directory ***
[2026-01-12 18:36:49] total 470172
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-12 18:36:49] -rwx------ 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc       100 Jan 12 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 18:36:49] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 17:20 run_atlas
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc       105 Jan 12 17:20 job.xml
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc 286918807 Jan 12 17:20 EVNT.48188454._000002.pool.root.1
[2026-01-12 18:36:49] drwxrwx--x 2 boinc boinc      4096 Jan 12 17:20 shared
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc    592402 Jan 12 17:20 input.tar.gz
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc     15847 Jan 12 17:20 start_atlas.sh
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc         0 Jan 12 17:20 boinc_setup_complete
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc      6440 Jan 12 17:20 init_data.xml
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc         0 Jan 12 17:20 boinc_lockfile
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc      2618 Jan 12 17:20 pandaJob.out
[2026-01-12 18:36:49] -rw------- 1 boinc boinc    988542 Jan 12 17:20 agis_schedconf.cvmfs.json
[2026-01-12 18:36:49] -rw------- 1 boinc boinc   1516240 Jan 12 17:20 agis_ddmendpoints.agis.ALL.json
[2026-01-12 18:36:49] drwx------ 5 boinc boinc      4096 Jan 12 17:20 pilot3
[2026-01-12 18:36:49] -rw------- 1 boinc boinc 188696235 Jan 12 18:35 HITS.48188456._000049.pool.root.1
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc       529 Jan 12 18:35 boinc_task_state.xml
[2026-01-12 18:36:49] -rw------- 1 boinc boinc      1043 Jan 12 18:35 memory_monitor_summary.json
[2026-01-12 18:36:49] -rw------- 1 boinc boinc    293653 Jan 12 18:36 log.48188456._000049.job.log.tgz.1
[2026-01-12 18:36:49] -rw------- 1 boinc boinc        95 Jan 12 18:36 pilot_heartbeat.json
[2026-01-12 18:36:49] -rw------- 1 boinc boinc      7795 Jan 12 18:36 heartbeat.json
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc      8192 Jan 12 18:36 boinc_mmap_file
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc        27 Jan 12 18:36 wrapper_checkpoint.txt
[2026-01-12 18:36:49] -rw------- 1 boinc boinc      5010 Jan 12 18:36 pilotlog.txt
[2026-01-12 18:36:49] -rw------- 1 boinc boinc    671155 Jan 12 18:36 log.48188456._000049.job.log.1
[2026-01-12 18:36:49] -rw------- 1 boinc boinc       357 Jan 12 18:36 output.list
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc       620 Jan 12 18:36 runtime_log
[2026-01-12 18:36:49] -rw------- 1 boinc boinc    983040 Jan 12 18:36 result.tar.gz
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc      8907 Jan 12 18:36 runtime_log.err
[2026-01-12 18:36:49] -rw------- 1 boinc boinc       664 Jan 12 18:36 X8uMDm5ZWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHdnKDmeqYFGn.diag
[2026-01-12 18:36:49] -rw-r--r-- 1 boinc boinc     22050 Jan 12 18:36 stderr.txt
[2026-01-12 18:36:49] HITS file was successfully produced:
[2026-01-12 18:36:49] -rw------- 1 boinc boinc 188696235 Jan 12 18:35 shared/HITS.pool.root.1
[2026-01-12 18:36:49]  *** Contents of shared directory: ***
[2026-01-12 18:36:49] total 466036
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc 286918807 Jan 12 17:20 ATLAS.root_0
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc    592402 Jan 12 17:20 input.tar.gz
[2026-01-12 18:36:49] -rw-r--r-- 2 boinc boinc     15847 Jan 12 17:20 start_atlas.sh
[2026-01-12 18:36:49] -rw------- 1 boinc boinc 188696235 Jan 12 18:35 HITS.pool.root.1
[2026-01-12 18:36:49] -rw------- 1 boinc boinc    983040 Jan 12 18:36 result.tar.gz
18:36:51 (3512547): run_atlas exited; CPU time 12876.897167
18:36:51 (3512547): called boinc_finish(0)

</stderr_txt>
]]>

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