Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:15:47 (1134709): wrapper (7.7.26015): starting
05:15:47 (1134709): wrapper: running run_atlas (--nthreads 4)
[2026-01-13 05:15:47] Arguments: --nthreads 4
[2026-01-13 05:15:47] Threads: 4
[2026-01-13 05:15:47] Checking for CVMFS
[2026-01-13 05:15:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 05:15:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 05:15:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 05:15:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 05:15:48] 2.9.2.0 971077 1081 72536 155076 0 56 36838785 36864000 0 130560 0 435464 99.981 38306 15328 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-13 05:15:48] CVMFS is ok
[2026-01-13 05:15:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-13 05:15:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-13 05:15:48] Further information can be found at the LHC@home message board.
[2026-01-13 05:15:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 05:15:48] Checking for apptainer binary...
[2026-01-13 05:15:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-13 05:15:48] Running /usr/bin/apptainer --version
[2026-01-13 05:15:48] apptainer version 1.4.1-1.1
[2026-01-13 05:15:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 05:15:48] thA381
[2026-01-13 05:15:48] apptainer works
[2026-01-13 05:15:48] Set ATHENA_PROC_NUMBER=4
[2026-01-13 05:15:48] Set ATHENA_CORE_NUMBER=4
[2026-01-13 05:15:48] Starting ATLAS job with PandaID=6966979352
[2026-01-13 05:15:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 05:22:03]  *** The last 200 lines of the pilot log: ***
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,593 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 05:22:03] 2026-01-13 04:21:30,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,594 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 05:22:03] 2026-01-13 04:21:30,594 | INFO     | job 6966979352 has completed (purged errors)
[2026-01-13 05:22:03] 2026-01-13 04:21:30,594 | INFO     | overall cleanup function is called
[2026-01-13 05:22:03] 2026-01-13 04:21:31,600 | INFO     | --- collectZombieJob: --- 10, [1145080]
[2026-01-13 05:22:03] 2026-01-13 04:21:31,600 | INFO     | zombie collector waiting for pid 1145080
[2026-01-13 05:22:03] 2026-01-13 04:21:31,601 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 05:22:03] 2026-01-13 04:21:31,601 | INFO     | collected zombie processes
[2026-01-13 05:22:03] 2026-01-13 04:21:31,601 | INFO     | will attempt to kill all subprocesses of pid=1145080
[2026-01-13 05:22:03] 2026-01-13 04:21:31,646 | INFO     | process IDs to be killed: [1145080] (in reverse order)
[2026-01-13 05:22:03] 2026-01-13 04:21:31,680 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 05:22:03] 2026-01-13 04:21:31,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 05:22:03] 2026-01-13 04:21:31,682 | INFO     | did not find any defunct processes belonging to 1145080
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | did not find any defunct processes belonging to 1145080
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | ready for new job
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | ***************************************
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 05:22:03] 2026-01-13 04:21:31,684 | INFO     | ***************************************
[2026-01-13 05:22:03] 2026-01-13 04:21:31,685 | INFO     | 
[2026-01-13 05:22:03] 2026-01-13 04:21:31,685 | INFO     | architecture information:
[2026-01-13 05:22:03] 2026-01-13 04:21:31,685 | INFO     | executing command: cat /etc/os-release
[2026-01-13 05:22:03] 2026-01-13 04:21:31,699 | INFO     | cat /etc/os-release:
[2026-01-13 05:22:03] NAME="CentOS Linux"
[2026-01-13 05:22:03] VERSION="7 (Core)"
[2026-01-13 05:22:03] ID="centos"
[2026-01-13 05:22:03] ID_LIKE="rhel fedora"
[2026-01-13 05:22:03] VERSION_ID="7"
[2026-01-13 05:22:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 05:22:03] ANSI_COLOR="0;31"
[2026-01-13 05:22:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 05:22:03] HOME_URL="https://www.centos.org/"
[2026-01-13 05:22:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 05:22:03] 
[2026-01-13 05:22:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 05:22:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 05:22:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 05:22:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 05:22:03] 
[2026-01-13 05:22:03] 2026-01-13 04:21:31,699 | INFO     | ***************************************
[2026-01-13 05:22:03] 2026-01-13 04:21:32,202 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-13 05:22:03] 2026-01-13 04:21:32,220 | INFO     | sufficient remaining disk space (223226101760 B)
[2026-01-13 05:22:03] 2026-01-13 04:21:32,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 05:22:03] 2026-01-13 04:21:32,221 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 05:22:03] 2026-01-13 04:21:32,221 | INFO     | update_server=False
[2026-01-13 05:22:03] 2026-01-13 04:21:32,221 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 05:22:03] 2026-01-13 04:21:32,221 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 05:22:03] 2026-01-13 04:21:32,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:22:03] 2026-01-13 04:21:32,594 | INFO     | all job control threads have been joined
[2026-01-13 05:22:03] 2026-01-13 04:21:32,716 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-13 05:22:03] 2026-01-13 04:21:32,716 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-13 05:22:03] 2026-01-13 04:21:32,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 05:22:03] 2026-01-13 04:21:32,717 | INFO     | will abort loop
[2026-01-13 05:22:03] 2026-01-13 04:21:33,114 | INFO     | all data control threads have been joined
[2026-01-13 05:22:03] 2026-01-13 04:21:33,226 | INFO     | [job] retrieve thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,227 | INFO     | [job] queue monitor thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,335 | INFO     | [data] copytool_in thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,386 | INFO     | [payload] failed_post thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,562 | INFO     | [payload] validate_post thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,599 | INFO     | all payload control threads have been joined
[2026-01-13 05:22:03] 2026-01-13 04:21:33,600 | INFO     | [job] control thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,722 | INFO     | [job] job monitor thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:33,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 05:22:03] 2026-01-13 04:21:34,093 | INFO     | [job] validate thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,120 | INFO     | [data] control thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,190 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,227 | INFO     | [data] copytool_out thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,265 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,592 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,605 | INFO     | [payload] control thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:34,716 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:37,815 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 05:22:03] 2026-01-13 04:21:56,191 | INFO     | [monitor] cgroup control has ended
[2026-01-13 05:22:03] 2026-01-13 04:21:58,087 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139722061686592)>', '<ExcThread(monitor, started 139720981997312)>']
[2026-01-13 05:22:03] 2026-01-13 04:22:01,793 | INFO     | PID=1138503 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 05:22:03] 2026-01-13 04:22:01,794 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 05:22:03] 2026-01-13 04:22:01,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 05:22:03] 2026-01-13 04:22:01,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 05:22:03] 2026-01-13 04:22:01,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 05:22:03] 2026-01-13 04:22:01,794 | INFO     | [monitor] control thread has ended
[2026-01-13 05:22:03] 2026-01-13 04:22:03,113 | INFO     | all workflow threads have been joined
[2026-01-13 05:22:03] 2026-01-13 04:22:03,113 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 05:22:03] 2026-01-13 04:22:03,113 | INFO     | traces error code: 0
[2026-01-13 05:22:03] 2026-01-13 04:22:03,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 05:22:03] 2026-01-13 04:22:03,193 [wrapper] ==== pilot stdout END ====
[2026-01-13 05:22:03] 2026-01-13 04:22:03,198 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 05:22:03] 2026-01-13 04:22:03,201 [wrapper] pilotpid: 1138503
[2026-01-13 05:22:03] 2026-01-13 04:22:03,205 [wrapper] Pilot exit status: 0
[2026-01-13 05:22:03] 2026-01-13 04:22:03,217 [wrapper] pandaids: 6966979352
[2026-01-13 05:22:03] 2026-01-13 04:22:03,240 [wrapper] cleanup supervisor_pilot 1138509 1138504
[2026-01-13 05:22:03] 2026-01-13 04:22:03,244 [wrapper] Test setup, not cleaning
[2026-01-13 05:22:03] 2026-01-13 04:22:03,248 [wrapper] apfmon messages muted
[2026-01-13 05:22:03] 2026-01-13 04:22:03,251 [wrapper] ==== wrapper stdout END ====
[2026-01-13 05:22:03] 2026-01-13 04:22:03,255 [wrapper] ==== wrapper stderr END ====
[2026-01-13 05:22:03]  *** Error codes and diagnostics ***
[2026-01-13 05:22:03]     "exeErrorCode": 65,
[2026-01-13 05:22:03]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-01-13 05:22:03]     "pilotErrorCode": 1305,
[2026-01-13 05:22:03]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-01-13 05:22:03]  *** Listing of results directory ***
[2026-01-13 05:22:03] total 284240
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-13 05:22:03] -rwx------ 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc       100 Jan 13 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 05:22:03] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 05:15 run_atlas
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc       105 Jan 13 05:15 job.xml
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc 286789784 Jan 13 05:15 EVNT.48188454._000005.pool.root.1
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc    592407 Jan 13 05:15 input.tar.gz
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc     15847 Jan 13 05:15 start_atlas.sh
[2026-01-13 05:22:03] drwxrwx--x 2 boinc boinc      4096 Jan 13 05:15 shared
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc         0 Jan 13 05:15 boinc_setup_complete
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc      6376 Jan 13 05:15 init_data.xml
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc         0 Jan 13 05:15 boinc_lockfile
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc      2621 Jan 13 05:15 pandaJob.out
[2026-01-13 05:22:03] -rw------- 1 boinc boinc    987763 Jan 13 05:15 agis_schedconf.cvmfs.json
[2026-01-13 05:22:03] -rw------- 1 boinc boinc   1516240 Jan 13 05:15 agis_ddmendpoints.agis.ALL.json
[2026-01-13 05:22:03] drwx------ 5 boinc boinc      4096 Jan 13 05:15 pilot3
[2026-01-13 05:22:03] -rw------- 1 boinc boinc       996 Jan 13 05:19 memory_monitor_summary.json
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc       526 Jan 13 05:19 boinc_task_state.xml
[2026-01-13 05:22:03] -rw------- 1 boinc boinc     76792 Jan 13 05:19 log.48188456._000113.job.log.tgz.1
[2026-01-13 05:22:03] -rw------- 1 boinc boinc      9691 Jan 13 05:21 heartbeat.json
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc        23 Jan 13 05:21 wrapper_checkpoint.txt
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc      8192 Jan 13 05:21 boinc_mmap_file
[2026-01-13 05:22:03] -rw------- 1 boinc boinc        95 Jan 13 05:22 pilot_heartbeat.json
[2026-01-13 05:22:03] -rw------- 1 boinc boinc      4938 Jan 13 05:22 pilotlog.txt
[2026-01-13 05:22:03] -rw------- 1 boinc boinc    105329 Jan 13 05:22 log.48188456._000113.job.log.1
[2026-01-13 05:22:03] -rw------- 1 boinc boinc       188 Jan 13 05:22 output.list
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc       620 Jan 13 05:22 runtime_log
[2026-01-13 05:22:03] -rw------- 1 boinc boinc    204800 Jan 13 05:22 result.tar.gz
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc      8744 Jan 13 05:22 runtime_log.err
[2026-01-13 05:22:03] -rw------- 1 boinc boinc       649 Jan 13 05:22 RMyNDmeaWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNenKDm36TmKn.diag
[2026-01-13 05:22:03] -rw-r--r-- 1 boinc boinc     12699 Jan 13 05:22 stderr.txt
[2026-01-13 05:22:03] No HITS result produced
[2026-01-13 05:22:03]  *** Contents of shared directory: ***
[2026-01-13 05:22:03] total 280872
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc 286789784 Jan 13 05:15 ATLAS.root_0
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc    592407 Jan 13 05:15 input.tar.gz
[2026-01-13 05:22:03] -rw-r--r-- 2 boinc boinc     15847 Jan 13 05:15 start_atlas.sh
[2026-01-13 05:22:03] -rw------- 1 boinc boinc    204800 Jan 13 05:22 result.tar.gz
05:22:04 (1134709): run_atlas exited; CPU time 77.676063
05:22:04 (1134709): called boinc_finish(0)

</stderr_txt>
]]>

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