Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:55:52 (5806): wrapper (7.7.26015): starting
13:55:52 (5806): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 13:55:52] Arguments: --nthreads 8
[2026-01-12 13:55:52] Threads: 8
[2026-01-12 13:55:52] Checking for CVMFS
[2026-01-12 13:55:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:55:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:55:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:55:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:55:57] 2.11.2.0 31595 39761 124876 155053 1 11 23296380 25165825 96 130560 0 17415344 99.825 9624004 2846 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 13:55:57] CVMFS is ok
[2026-01-12 13:55:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:55:57] Checking for apptainer binary...
[2026-01-12 13:55:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:55:57] Running /usr/bin/apptainer --version
[2026-01-12 13:55:57] apptainer version 1.3.2-1.el7
[2026-01-12 13:55:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:56:12] cg-vwn421.simple-grid.lan
[2026-01-12 13:56:12] apptainer works
[2026-01-12 13:56:12] Set ATHENA_PROC_NUMBER=8
[2026-01-12 13:56:12] Set ATHENA_CORE_NUMBER=8
[2026-01-12 13:56:12] Starting ATLAS job with PandaID=6966979350
[2026-01-12 13:56:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 17:53:59]  *** The last 200 lines of the pilot log: ***
[2026-01-12 17:53:59] 2026-01-12 16:52:49,510 | INFO     | time since job start (13944s) is within the limit (349056.0s)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,002 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 17:53:59] 2026-01-12 16:52:50,003 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-12 17:53:59] 2026-01-12 16:52:50,005 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-6966979350/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,006 | INFO     | extracted standard info from prmon json
[2026-01-12 17:53:59] 2026-01-12 16:52:50,006 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 17:53:59] 2026-01-12 16:52:50,006 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 17:53:59] 2026-01-12 16:52:50,006 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 17:53:59] 2026-01-12 16:52:50,006 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 17:53:59] 2026-01-12 16:52:50,011 | INFO     | fitting pss+swap vs Time
[2026-01-12 17:53:59] 2026-01-12 16:52:50,012 | INFO     | sum of square deviations: 3212467674.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,014 | INFO     | sum of deviations: 95400440924.49997
[2026-01-12 17:53:59] 2026-01-12 16:52:50,014 | INFO     | mean x: 1768229995.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,014 | INFO     | mean y: 2450715.0779816513
[2026-01-12 17:53:59] 2026-01-12 16:52:50,014 | INFO     | intersect: -52508558988.04132
[2026-01-12 17:53:59] 2026-01-12 16:52:50,022 | INFO     | chi2: 7.6576024646078995
[2026-01-12 17:53:59] 2026-01-12 16:52:50,022 | INFO     | sum of square deviations: 2996454322.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,024 | INFO     | sum of deviations: 107751933357.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,024 | INFO     | mean x: 1768229843.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,025 | INFO     | mean y: 2459243.164319249
[2026-01-12 17:53:59] 2026-01-12 16:52:50,025 | INFO     | intersect: -63582753053.88954
[2026-01-12 17:53:59] 2026-01-12 16:52:50,025 | INFO     | chi2: 6.952118135425722
[2026-01-12 17:53:59] 2026-01-12 16:52:50,025 | INFO     | current chi2=6.952118135425722 (change=9.21286175983675 %)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,025 | INFO     | right removable region: 212
[2026-01-12 17:53:59] 2026-01-12 16:52:50,026 | INFO     | sum of square deviations: 2996454322.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,028 | INFO     | sum of deviations: 21003000219.00001
[2026-01-12 17:53:59] 2026-01-12 16:52:50,028 | INFO     | mean x: 1768230148.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,028 | INFO     | mean y: 2503187.5492957747
[2026-01-12 17:53:59] 2026-01-12 16:52:50,028 | INFO     | intersect: -12391524618.253653
[2026-01-12 17:53:59] 2026-01-12 16:52:50,029 | INFO     | chi2: 2.902784194748385
[2026-01-12 17:53:59] 2026-01-12 16:52:50,029 | INFO     | current chi2=2.902784194748385 (change=62.09278023814182 %)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,029 | INFO     | sum of square deviations: 2790348132.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,031 | INFO     | sum of deviations: -27120209569.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,031 | INFO     | mean x: 1768230300.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,031 | INFO     | mean y: 2538678.3221153845
[2026-01-12 17:53:59] 2026-01-12 16:52:50,031 | INFO     | intersect: 17188486111.45766
[2026-01-12 17:53:59] 2026-01-12 16:52:50,032 | INFO     | chi2: 0.9304256195049105
[2026-01-12 17:53:59] 2026-01-12 16:52:50,032 | INFO     | current chi2=0.9304256195049105 (change=67.94713085498385 %)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,032 | INFO     | sum of square deviations: 2593916542.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,034 | INFO     | sum of deviations: -34908566074.99999
[2026-01-12 17:53:59] 2026-01-12 16:52:50,034 | INFO     | mean x: 1768230453.0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,034 | INFO     | mean y: 2544654.9113300494
[2026-01-12 17:53:59] 2026-01-12 16:52:50,034 | INFO     | intersect: 23799142812.531498
[2026-01-12 17:53:59] 2026-01-12 16:52:50,035 | INFO     | chi2: 0.8293272630897383
[2026-01-12 17:53:59] 2026-01-12 16:52:50,035 | INFO     | current chi2=0.8293272630897383 (change=10.865818212203552 %)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,035 | INFO     | left removable region: 30
[2026-01-12 17:53:59] 2026-01-12 16:52:50,035 | INFO     | sum of square deviations: 1869302025.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,037 | INFO     | sum of deviations: -15747654104.000004
[2026-01-12 17:53:59] 2026-01-12 16:52:50,037 | INFO     | mean x: 1768230727.5
[2026-01-12 17:53:59] 2026-01-12 16:52:50,037 | INFO     | mean y: 2552009.6923076925
[2026-01-12 17:53:59] 2026-01-12 16:52:50,037 | INFO     | intersect: 14898746146.798746
[2026-01-12 17:53:59] 2026-01-12 16:52:50,044 | INFO     | chi2: 0.0351503287778077
[2026-01-12 17:53:59] 2026-01-12 16:52:50,044 | INFO     | current memory leak: -8.42 B/s (using 182 data points, chi2=0.04)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,045 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,045 | INFO     | ..............................
[2026-01-12 17:53:59] 2026-01-12 16:52:50,045 | INFO     | . Timing measurements:
[2026-01-12 17:53:59] 2026-01-12 16:52:50,045 | INFO     | . get job = 0 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,045 | INFO     | . initial setup = 8 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | . payload setup = 150 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | . stage-in = 0 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | . payload execution = 13451 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | . stage-out = 3 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | . log creation = 1 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,046 | INFO     | ..............................
[2026-01-12 17:53:59] 2026-01-12 16:52:50,202 | INFO     | 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,202 | INFO     | job summary report
[2026-01-12 17:53:59] 2026-01-12 16:52:50,202 | INFO     | --------------------------------------------------
[2026-01-12 17:53:59] 2026-01-12 16:52:50,202 | INFO     | PanDA job id: 6966979350
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | task id: 48188456
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | errors: (none)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | pilot state: finished 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | transexitcode: 0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | exeerrorcode: 0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | exeerrordiag: 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | exitcode: 0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,203 | INFO     | exitmsg: OK
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | cpuconsumptiontime: 49620 s
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | nevents: 400
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | neventsw: 0
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | pid: 16310
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | pgrp: 16310
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | corecount: 8
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | event service: False
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | sizes: {0: 2283285, 1: 2284142, 12: 2284142, 23: 2284170, 33: 2284198, 44: 2284254, 55: 2284410, 66: 2284438, 76: 2284466, 87: 2284522, 98: 2284550, 109: 2285176, 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,204 | INFO     | --------------------------------------------------
[2026-01-12 17:53:59] 2026-01-12 16:52:50,205 | INFO     | 
[2026-01-12 17:53:59] 2026-01-12 16:52:50,205 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2026-01-12 17:53:59] 2026-01-12 16:52:50,709 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,710 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,710 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,710 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,710 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,710 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | job 6966979350 has completed (purged errors)
[2026-01-12 17:53:59] 2026-01-12 16:52:50,712 | INFO     | overall cleanup function is called
[2026-01-12 17:53:59] 2026-01-12 16:52:51,722 | INFO     | --- collectZombieJob: --- 10, [16310]
[2026-01-12 17:53:59] 2026-01-12 16:52:51,722 | INFO     | zombie collector waiting for pid 16310
[2026-01-12 17:53:59] 2026-01-12 16:52:51,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 17:53:59] 2026-01-12 16:52:51,722 | INFO     | collected zombie processes
[2026-01-12 17:53:59] 2026-01-12 16:52:51,722 | INFO     | will attempt to kill all subprocesses of pid=16310
[2026-01-12 17:53:59] 2026-01-12 16:52:51,820 | INFO     | process IDs to be killed: [16310] (in reverse order)
[2026-01-12 17:53:59] 2026-01-12 16:52:52,478 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 17:53:59] 2026-01-12 16:52:52,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 17:53:59] 2026-01-12 16:52:52,481 | INFO     | did not find any defunct processes belonging to 16310
[2026-01-12 17:53:59] 2026-01-12 16:52:52,482 | INFO     | did not find any defunct processes belonging to 16310
[2026-01-12 17:53:59] 2026-01-12 16:52:52,483 | INFO     | ready for new job
[2026-01-12 17:53:59] 2026-01-12 16:52:52,483 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 17:53:59] 2026-01-12 16:52:52,485 | INFO     | ***************************************
[2026-01-12 17:53:59] 2026-01-12 16:52:52,485 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 17:53:59] 2026-01-12 16:52:52,485 | INFO     | ***************************************
[2026-01-12 17:53:59] 2026-01-12 16:52:52,485 | INFO     | 
[2026-01-12 17:53:59] 2026-01-12 16:52:52,486 | INFO     | pilot is running in a VM
[2026-01-12 17:53:59] 2026-01-12 16:52:52,486 | INFO     | architecture information:
[2026-01-12 17:53:59] 2026-01-12 16:52:52,493 | INFO     | executing command: cat /etc/os-release
[2026-01-12 17:53:59] 2026-01-12 16:52:52,782 | INFO     | cat /etc/os-release:
[2026-01-12 17:53:59] NAME="CentOS Linux"
[2026-01-12 17:53:59] VERSION="7 (Core)"
[2026-01-12 17:53:59] ID="centos"
[2026-01-12 17:53:59] ID_LIKE="rhel fedora"
[2026-01-12 17:53:59] VERSION_ID="7"
[2026-01-12 17:53:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 17:53:59] ANSI_COLOR="0;31"
[2026-01-12 17:53:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 17:53:59] HOME_URL="https://www.centos.org/"
[2026-01-12 17:53:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 17:53:59] 
[2026-01-12 17:53:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 17:53:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 17:53:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 17:53:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 17:53:59] 
[2026-01-12 17:53:59] 2026-01-12 16:52:52,783 | INFO     | ***************************************
[2026-01-12 17:53:59] 2026-01-12 16:52:53,286 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-01-12 17:53:59] 2026-01-12 16:52:53,560 | INFO     | sufficient remaining disk space (496530096128 B)
[2026-01-12 17:53:59] 2026-01-12 16:52:53,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 17:53:59] 2026-01-12 16:52:53,561 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 17:53:59] 2026-01-12 16:52:53,561 | INFO     | update_server=False
[2026-01-12 17:53:59] 2026-01-12 16:52:53,561 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 17:53:59] 2026-01-12 16:52:53,561 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 17:53:59] 2026-01-12 16:52:53,566 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 17:53:59] 2026-01-12 16:52:53,566 | INFO     | aborting loop
[2026-01-12 17:53:59] 2026-01-12 16:52:53,570 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 17:53:59] 2026-01-12 16:52:53,924 | INFO     | all data control threads have been joined
[2026-01-12 17:53:59] 2026-01-12 16:52:54,245 | INFO     | all job control threads have been joined
[2026-01-12 17:53:59] 2026-01-12 16:52:54,567 | INFO     | [job] retrieve thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:54,572 | INFO     | [job] job monitor thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:54,736 | INFO     | all payload control threads have been joined
[2026-01-12 17:53:59] 2026-01-12 16:52:54,882 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:54,930 | INFO     | [data] control thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,078 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 17:53:59] 2026-01-12 16:52:55,237 | INFO     | [payload] failed_post thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,251 | INFO     | [job] control thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,290 | INFO     | [job] validate thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,499 | INFO     | [data] copytool_in thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,577 | INFO     | [data] copytool_out thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,623 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,703 | INFO     | [payload] validate_post thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,742 | INFO     | [payload] control thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:55,794 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:56,223 | INFO     | [job] queue monitor thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:52:57,572 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 17:53:59] 2026-01-12 16:53:22,628 | INFO     | PID=9842 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 17:53:59] 2026-01-12 16:53:22,628 | INFO     | .. there are 2 such processes running
[2026-01-12 17:53:59] 2026-01-12 16:53:22,629 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 17:53:59] 2026-01-12 16:53:22,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 17:53:59] 2026-01-12 16:53:22,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 17:53:59] 2026-01-12 16:53:49,102 | INFO     | [monitor] cgroup control has ended
[2026-01-12 17:53:59] 2026-01-12 16:53:49,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475059496768)>', '<ExcThread(monitor, started 140474488715008)>']
[2026-01-12 17:53:59] 2026-01-12 16:53:49,791 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 17:53:59] 2026-01-12 16:53:49,792 | INFO     | [monitor] control thread has ended
[2026-01-12 17:53:59] 2026-01-12 16:53:54,271 | INFO     | all workflow threads have been joined
[2026-01-12 17:53:59] 2026-01-12 16:53:54,271 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 17:53:59] 2026-01-12 16:53:54,271 | INFO     | traces error code: 0
[2026-01-12 17:53:59] 2026-01-12 16:53:54,271 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 17:53:59] 2026-01-12 16:53:54,652 [wrapper] ==== pilot stdout END ====
[2026-01-12 17:53:59] 2026-01-12 16:53:54,758 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 17:53:59] 2026-01-12 16:53:54,873 [wrapper] pilotpid: 9842
[2026-01-12 17:53:59] 2026-01-12 16:53:54,975 [wrapper] Pilot exit status: 0
[2026-01-12 17:53:59] 2026-01-12 16:53:55,511 [wrapper] pandaids: 6966979350
[2026-01-12 17:53:59] 2026-01-12 16:53:56,727 [wrapper] cleanup supervisor_pilot  5381 9843
[2026-01-12 17:53:59] 2026-01-12 16:53:56,798 [wrapper] Test setup, not cleaning
[2026-01-12 17:53:59] 2026-01-12 16:53:56,896 [wrapper] apfmon messages muted
[2026-01-12 17:53:59] 2026-01-12 16:53:56,998 [wrapper] ==== wrapper stdout END ====
[2026-01-12 17:53:59] 2026-01-12 16:53:57,104 [wrapper] ==== wrapper stderr END ====
[2026-01-12 17:53:59]  *** Error codes and diagnostics ***
[2026-01-12 17:53:59]     "exeErrorCode": 0,
[2026-01-12 17:53:59]     "exeErrorDiag": "",
[2026-01-12 17:53:59]     "pilotErrorCode": 0,
[2026-01-12 17:53:59]     "pilotErrorDiag": "",
[2026-01-12 17:53:59]  *** Listing of results directory ***
[2026-01-12 17:53:59] total 473940
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-12 17:53:59] -rwx------. 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc       100 Jan 12 13:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 17:53:59] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 13:55 run_atlas
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc       105 Jan 12 13:55 job.xml
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc 286789784 Jan 12 13:55 EVNT.48188454._000005.pool.root.1
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:55 start_atlas.sh
[2026-01-12 17:53:59] drwxrwx--x. 2 boinc boinc        68 Jan 12 13:55 shared
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc    592405 Jan 12 13:55 input.tar.gz
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc      6391 Jan 12 13:55 init_data.xml
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc         0 Jan 12 13:55 boinc_lockfile
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc      2621 Jan 12 13:56 pandaJob.out
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc    987696 Jan 12 14:00 agis_schedconf.cvmfs.json
[2026-01-12 17:53:59] drwx------. 5 boinc boinc      4096 Jan 12 14:00 pilot3
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc 189950011 Jan 12 17:49 HITS.48188456._000111.pool.root.1
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc       531 Jan 12 17:49 boinc_task_state.xml
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc      1011 Jan 12 17:50 memory_monitor_summary.json
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc   1516240 Jan 12 17:50 agis_ddmendpoints.agis.ALL.json
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc    473375 Jan 12 17:51 log.48188456._000111.job.log.tgz.1
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc      7771 Jan 12 17:52 heartbeat.json
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc        95 Jan 12 17:53 pilot_heartbeat.json
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc      8192 Jan 12 17:53 boinc_mmap_file
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc        28 Jan 12 17:53 wrapper_checkpoint.txt
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc      4884 Jan 12 17:53 pilotlog.txt
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc   1864477 Jan 12 17:53 log.48188456._000111.job.log.1
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc       357 Jan 12 17:53 output.list
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc       620 Jan 12 17:53 runtime_log
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc   2355200 Jan 12 17:53 result.tar.gz
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc      8833 Jan 12 17:53 runtime_log.err
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc       657 Jan 12 17:53 gDxNDmeaWz8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMenKDmoErK9m.diag
[2026-01-12 17:53:59] -rw-r--r--. 1 boinc boinc     20772 Jan 12 17:53 stderr.txt
[2026-01-12 17:53:59] HITS file was successfully produced:
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc 189950011 Jan 12 17:49 shared/HITS.pool.root.1
[2026-01-12 17:53:59]  *** Contents of shared directory: ***
[2026-01-12 17:53:59] total 468468
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc 286789784 Jan 12 13:55 ATLAS.root_0
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:55 start_atlas.sh
[2026-01-12 17:53:59] -rw-r--r--. 2 boinc boinc    592405 Jan 12 13:55 input.tar.gz
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc 189950011 Jan 12 17:49 HITS.pool.root.1
[2026-01-12 17:53:59] -rw-------. 1 boinc boinc   2355200 Jan 12 17:53 result.tar.gz
17:54:01 (5806): run_atlas exited; CPU time 49760.430425
17:54:01 (5806): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN