Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:21 (3841381): wrapper (7.7.26015): starting
14:02:21 (3841381): wrapper: running run_atlas (--nthreads 3)
[2026-01-12 14:02:21] Arguments: --nthreads 3
[2026-01-12 14:02:21] Threads: 3
[2026-01-12 14:02:21] Checking for CVMFS
[2026-01-12 14:02:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 14:02:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 14:02:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 14:02:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 14:02:24] 2.9.2.0 3841579 0 29708 155053 4 1 22252507 36864001 0 130560 0 0 0.000 1335 531 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 14:02:24] CVMFS is ok
[2026-01-12 14:02:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 14:02:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 14:02:24] Further information can be found at the LHC@home message board.
[2026-01-12 14:02:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 14:02:24] Checking for apptainer binary...
[2026-01-12 14:02:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 14:02:24] Running /usr/bin/apptainer --version
[2026-01-12 14:02:24] apptainer version 1.4.1-1.1
[2026-01-12 14:02:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 14:02:24] atlasA228b
[2026-01-12 14:02:24] apptainer works
[2026-01-12 14:02:24] Set ATHENA_PROC_NUMBER=3
[2026-01-12 14:02:24] Set ATHENA_CORE_NUMBER=3
[2026-01-12 14:02:24] Starting ATLAS job with PandaID=6966979427
[2026-01-12 14:02:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 15:17:43]  *** The last 200 lines of the pilot log: ***
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | job 6966979427 has completed (purged errors)
[2026-01-12 15:17:43] 2026-01-12 14:17:05,052 | INFO     | overall cleanup function is called
[2026-01-12 15:17:43] 2026-01-12 14:17:06,054 | INFO     | --- collectZombieJob: --- 10, [3852128]
[2026-01-12 15:17:43] 2026-01-12 14:17:06,054 | INFO     | zombie collector waiting for pid 3852128
[2026-01-12 15:17:43] 2026-01-12 14:17:06,054 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 15:17:43] 2026-01-12 14:17:06,054 | INFO     | collected zombie processes
[2026-01-12 15:17:43] 2026-01-12 14:17:06,054 | INFO     | will attempt to kill all subprocesses of pid=3852128
[2026-01-12 15:17:43] 2026-01-12 14:17:06,097 | INFO     | process IDs to be killed: [3852128] (in reverse order)
[2026-01-12 15:17:43] 2026-01-12 14:17:06,123 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 15:17:43] 2026-01-12 14:17:06,123 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 15:17:43] 2026-01-12 14:17:06,125 | INFO     | did not find any defunct processes belonging to 3852128
[2026-01-12 15:17:43] 2026-01-12 14:17:06,127 | INFO     | did not find any defunct processes belonging to 3852128
[2026-01-12 15:17:43] 2026-01-12 14:17:06,127 | INFO     | ready for new job
[2026-01-12 15:17:43] 2026-01-12 14:17:06,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 15:17:43] 2026-01-12 14:17:06,128 | INFO     | ***************************************
[2026-01-12 15:17:43] 2026-01-12 14:17:06,128 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 15:17:43] 2026-01-12 14:17:06,128 | INFO     | ***************************************
[2026-01-12 15:17:43] 2026-01-12 14:17:06,128 | INFO     | 
[2026-01-12 15:17:43] 2026-01-12 14:17:06,129 | INFO     | architecture information:
[2026-01-12 15:17:43] 2026-01-12 14:17:06,129 | INFO     | executing command: cat /etc/os-release
[2026-01-12 15:17:43] 2026-01-12 14:17:06,138 | INFO     | cat /etc/os-release:
[2026-01-12 15:17:43] NAME="CentOS Linux"
[2026-01-12 15:17:43] VERSION="7 (Core)"
[2026-01-12 15:17:43] ID="centos"
[2026-01-12 15:17:43] ID_LIKE="rhel fedora"
[2026-01-12 15:17:43] VERSION_ID="7"
[2026-01-12 15:17:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 15:17:43] ANSI_COLOR="0;31"
[2026-01-12 15:17:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 15:17:43] HOME_URL="https://www.centos.org/"
[2026-01-12 15:17:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 15:17:43] 
[2026-01-12 15:17:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 15:17:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 15:17:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 15:17:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 15:17:43] 
[2026-01-12 15:17:43] 2026-01-12 14:17:06,138 | INFO     | ***************************************
[2026-01-12 15:17:43] 2026-01-12 14:17:06,641 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | INFO     | sufficient remaining disk space (283603107840 B)
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | INFO     | update_server=False
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 15:17:43] 2026-01-12 14:17:06,654 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 15:17:43] 2026-01-12 14:17:06,767 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-12 15:17:43] 2026-01-12 14:17:06,767 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-12 15:17:43] 2026-01-12 14:17:06,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 15:17:43] 2026-01-12 14:17:06,767 | INFO     | will abort loop
[2026-01-12 15:17:43] 2026-01-12 14:17:07,222 | INFO     | all data control threads have been joined
[2026-01-12 15:17:43] 2026-01-12 14:17:07,239 | INFO     | all payload control threads have been joined
[2026-01-12 15:17:43] 2026-01-12 14:17:07,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 15:17:43] 2026-01-12 14:17:07,524 | INFO     | all job control threads have been joined
[2026-01-12 15:17:43] 2026-01-12 14:17:07,660 | INFO     | [job] retrieve thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:07,660 | INFO     | [job] queue monitor thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:07,680 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:07,773 | INFO     | [job] job monitor thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:07,990 | INFO     | [data] copytool_in thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,227 | INFO     | [data] control thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,244 | INFO     | [payload] control thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,278 | INFO     | [job] validate thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,310 | INFO     | [payload] validate_post thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,345 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,426 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,457 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,529 | INFO     | [job] control thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,660 | INFO     | [data] copytool_out thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:08,864 | INFO     | [payload] failed_post thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:11,343 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 15:17:43] 2026-01-12 14:17:30,921 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-12 15:17:43] 2026-01-12 14:17:36,958 | INFO     | PID=3845659 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 15:17:43] 2026-01-12 14:17:36,958 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 15:17:43] 2026-01-12 14:17:36,958 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 15:17:43] 2026-01-12 14:17:36,958 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 15:17:43] 2026-01-12 14:17:36,996 | INFO     | [monitor] cgroup control has ended
[2026-01-12 15:17:43] 2026-01-12 14:17:38,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325314737984)>', '<ExcThread(monitor, started 140324827555584)>']
[2026-01-12 15:17:43] 2026-01-12 14:17:38,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 15:17:43] 2026-01-12 14:17:38,969 | INFO     | [monitor] control thread has ended
[2026-01-12 15:17:43] 2026-01-12 14:17:43,099 | INFO     | all workflow threads have been joined
[2026-01-12 15:17:43] 2026-01-12 14:17:43,100 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 15:17:43] 2026-01-12 14:17:43,100 | INFO     | traces error code: 0
[2026-01-12 15:17:43] 2026-01-12 14:17:43,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 15:17:43] 2026-01-12 14:17:43,150 [wrapper] ==== pilot stdout END ====
[2026-01-12 15:17:43] 2026-01-12 14:17:43,153 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 15:17:43] 2026-01-12 14:17:43,155 [wrapper] pilotpid: 3845659
[2026-01-12 15:17:43] 2026-01-12 14:17:43,158 [wrapper] Pilot exit status: 0
[2026-01-12 15:17:43] 2026-01-12 14:17:43,166 [wrapper] pandaids: 6966979427
[2026-01-12 15:17:43] 2026-01-12 14:17:43,183 [wrapper] cleanup supervisor_pilot 3866554 3845660
[2026-01-12 15:17:43] 2026-01-12 14:17:43,186 [wrapper] Test setup, not cleaning
[2026-01-12 15:17:43] 2026-01-12 14:17:43,188 [wrapper] apfmon messages muted
[2026-01-12 15:17:43] 2026-01-12 14:17:43,191 [wrapper] ==== wrapper stdout END ====
[2026-01-12 15:17:43] 2026-01-12 14:17:43,193 [wrapper] ==== wrapper stderr END ====
[2026-01-12 15:17:43]  *** Error codes and diagnostics ***
[2026-01-12 15:17:43]     "exeErrorCode": 0,
[2026-01-12 15:17:43]     "exeErrorDiag": "",
[2026-01-12 15:17:43]     "pilotErrorCode": 0,
[2026-01-12 15:17:43]     "pilotErrorDiag": "",
[2026-01-12 15:17:43]  *** Listing of results directory ***
[2026-01-12 15:17:43] total 476372
[2026-01-12 15:17:43] -rwx------ 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc       100 Jan 12 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 15:17:43] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 14:02 run_atlas
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc       105 Jan 12 14:02 job.xml
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc 286406398 Jan 12 14:02 EVNT.48188454._000008.pool.root.1
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc    592397 Jan 12 14:02 input.tar.gz
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc     15847 Jan 12 14:02 start_atlas.sh
[2026-01-12 15:17:43] drwxrwx--x 2 boinc boinc      4096 Jan 12 14:02 shared
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc         0 Jan 12 14:02 boinc_setup_complete
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc      6449 Jan 12 14:02 init_data.xml
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc         0 Jan 12 14:02 boinc_lockfile
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc      2621 Jan 12 14:02 pandaJob.out
[2026-01-12 15:17:43] -rw------- 1 boinc boinc    987696 Jan 12 14:02 agis_schedconf.cvmfs.json
[2026-01-12 15:17:43] -rw------- 1 boinc boinc   1516240 Jan 12 14:02 agis_ddmendpoints.agis.ALL.json
[2026-01-12 15:17:43] drwx------ 5 boinc boinc      4096 Jan 12 14:02 pilot3
[2026-01-12 15:17:43] -rw------- 1 boinc boinc 195613162 Jan 12 15:16 HITS.48188456._000188.pool.root.1
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc       529 Jan 12 15:16 boinc_task_state.xml
[2026-01-12 15:17:43] -rw------- 1 boinc boinc      1012 Jan 12 15:16 memory_monitor_summary.json
[2026-01-12 15:17:43] -rw------- 1 boinc boinc        95 Jan 12 15:16 pilot_heartbeat.json
[2026-01-12 15:17:43] -rw------- 1 boinc boinc    276717 Jan 12 15:16 log.48188456._000188.job.log.tgz.1
[2026-01-12 15:17:43] -rw------- 1 boinc boinc      7740 Jan 12 15:17 heartbeat.json
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc      8192 Jan 12 15:17 boinc_mmap_file
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc        27 Jan 12 15:17 wrapper_checkpoint.txt
[2026-01-12 15:17:43] -rw------- 1 boinc boinc      4938 Jan 12 15:17 pilotlog.txt
[2026-01-12 15:17:43] -rw------- 1 boinc boinc    662574 Jan 12 15:17 log.48188456._000188.job.log.1
[2026-01-12 15:17:43] -rw------- 1 boinc boinc       357 Jan 12 15:17 output.list
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc       620 Jan 12 15:17 runtime_log
[2026-01-12 15:17:43] -rw------- 1 boinc boinc    962560 Jan 12 15:17 result.tar.gz
[2026-01-12 15:17:43] -rw------- 1 boinc boinc       662 Jan 12 15:17 vx9KDm5ZWz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmvhKDmBSwjOo.diag
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc      8917 Jan 12 15:17 runtime_log.err
[2026-01-12 15:17:43] -rw-r--r-- 1 boinc boinc     11940 Jan 12 15:17 stderr.txt
[2026-01-12 15:17:43] HITS file was successfully produced:
[2026-01-12 15:17:43] -rw------- 1 boinc boinc 195613162 Jan 12 15:16 shared/HITS.pool.root.1
[2026-01-12 15:17:43]  *** Contents of shared directory: ***
[2026-01-12 15:17:43] total 472272
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc 286406398 Jan 12 14:02 ATLAS.root_0
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc    592397 Jan 12 14:02 input.tar.gz
[2026-01-12 15:17:43] -rw-r--r-- 2 boinc boinc     15847 Jan 12 14:02 start_atlas.sh
[2026-01-12 15:17:43] -rw------- 1 boinc boinc 195613162 Jan 12 15:16 HITS.pool.root.1
[2026-01-12 15:17:43] -rw------- 1 boinc boinc    962560 Jan 12 15:17 result.tar.gz
15:17:44 (3841381): run_atlas exited; CPU time 12693.637105
15:17:44 (3841381): called boinc_finish(0)

</stderr_txt>
]]>

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