Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:53 (1406): wrapper (7.7.26015): starting
13:57:53 (1406): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 13:57:53] Arguments: --nthreads 8
[2026-01-12 13:57:53] Threads: 8
[2026-01-12 13:57:53] Checking for CVMFS
[2026-01-12 13:57:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:57:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:57:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:57:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:57:58] 2.11.2.0 1091 39764 127460 155053 2 11 22255129 25165824 96 130560 0 19212645 99.829 10422742 3351 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 13:57:58] CVMFS is ok
[2026-01-12 13:57:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:57:58] Checking for apptainer binary...
[2026-01-12 13:57:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:57:58] Running /usr/bin/apptainer --version
[2026-01-12 13:57:59] apptainer version 1.3.2-1.el7
[2026-01-12 13:57:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:58:30] cg-vwn498.simple-grid.lan
[2026-01-12 13:58:30] apptainer works
[2026-01-12 13:58:30] Set ATHENA_PROC_NUMBER=8
[2026-01-12 13:58:30] Set ATHENA_CORE_NUMBER=8
[2026-01-12 13:58:30] Starting ATLAS job with PandaID=6966979409
[2026-01-12 13:58:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 17:46:28]  *** The last 200 lines of the pilot log: ***
[2026-01-12 17:46:28] 2026-01-12 16:45:41,378 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 17:46:28] 2026-01-12 16:45:41,379 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-12 17:46:28] 2026-01-12 16:45:41,381 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6966979409/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,381 | INFO     | extracted standard info from prmon json
[2026-01-12 17:46:28] 2026-01-12 16:45:41,381 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 17:46:28] 2026-01-12 16:45:41,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 17:46:28] 2026-01-12 16:45:41,382 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 17:46:28] 2026-01-12 16:45:41,382 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 17:46:28] 2026-01-12 16:45:41,386 | INFO     | fitting pss+swap vs Time
[2026-01-12 17:46:28] 2026-01-12 16:45:41,387 | INFO     | sum of square deviations: 2830787960.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,388 | INFO     | sum of deviations: 64321472325.99999
[2026-01-12 17:46:28] 2026-01-12 16:45:41,389 | INFO     | mean x: 1768229849.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,389 | INFO     | mean y: 2484379.4066985645
[2026-01-12 17:46:28] 2026-01-12 16:45:41,389 | INFO     | intersect: -40175426826.087
[2026-01-12 17:46:28] 2026-01-12 16:45:41,389 | INFO     | chi2: 8.677771188898372
[2026-01-12 17:46:28] 2026-01-12 16:45:41,390 | INFO     | sum of square deviations: 2632440055.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,391 | INFO     | sum of deviations: 77109466057.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,391 | INFO     | mean x: 1768229696.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,392 | INFO     | mean y: 2494003.0147058824
[2026-01-12 17:46:28] 2026-01-12 16:45:41,392 | INFO     | intersect: -51792511738.9604
[2026-01-12 17:46:28] 2026-01-12 16:45:41,392 | INFO     | chi2: 8.000504019138496
[2026-01-12 17:46:28] 2026-01-12 16:45:41,392 | INFO     | current chi2=8.000504019138496 (change=7.804621198428416 %)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,392 | INFO     | right removable region: 203
[2026-01-12 17:46:28] 2026-01-12 16:45:41,393 | INFO     | sum of square deviations: 2632440055.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,394 | INFO     | sum of deviations: -10342707044.499989
[2026-01-12 17:46:28] 2026-01-12 16:45:41,394 | INFO     | mean x: 1768230001.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,394 | INFO     | mean y: 2541748.132352941
[2026-01-12 17:46:28] 2026-01-12 16:45:41,395 | INFO     | intersect: 6949816713.833433
[2026-01-12 17:46:28] 2026-01-12 16:45:41,395 | INFO     | chi2: 3.437973842968062
[2026-01-12 17:46:28] 2026-01-12 16:45:41,395 | INFO     | current chi2=3.437973842968062 (change=60.381833443980135 %)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,395 | INFO     | sum of square deviations: 2443580700.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,397 | INFO     | sum of deviations: -59975017366.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,397 | INFO     | mean x: 1768230154.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,397 | INFO     | mean y: 2581658.969849246
[2026-01-12 17:46:28] 2026-01-12 16:45:41,397 | INFO     | intersect: 43401858054.15289
[2026-01-12 17:46:28] 2026-01-12 16:45:41,398 | INFO     | chi2: 1.0567124823376142
[2026-01-12 17:46:28] 2026-01-12 16:45:41,398 | INFO     | current chi2=1.0567124823376142 (change=69.26351011951456 %)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,398 | INFO     | sum of square deviations: 2263977332.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,400 | INFO     | sum of deviations: -65979379827.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,400 | INFO     | mean x: 1768230306.5
[2026-01-12 17:46:28] 2026-01-12 16:45:41,400 | INFO     | mean y: 2586692.3041237113
[2026-01-12 17:46:28] 2026-01-12 16:45:41,400 | INFO     | intersect: 51534347783.847755
[2026-01-12 17:46:28] 2026-01-12 16:45:41,400 | INFO     | chi2: 0.9565071441711483
[2026-01-12 17:46:28] 2026-01-12 16:45:41,401 | INFO     | current chi2=0.9565071441711483 (change=9.482743872277902 %)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,401 | INFO     | left removable region: 30
[2026-01-12 17:46:28] 2026-01-12 16:45:41,401 | INFO     | sum of square deviations: 1605470102.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,402 | INFO     | sum of deviations: -37192654649.99999
[2026-01-12 17:46:28] 2026-01-12 16:45:41,402 | INFO     | mean x: 1768230581.0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,402 | INFO     | mean y: 2586407.4971098267
[2026-01-12 17:46:28] 2026-01-12 16:45:41,403 | INFO     | intersect: 40965784201.573395
[2026-01-12 17:46:28] 2026-01-12 16:45:41,403 | INFO     | chi2: 0.1576866983724441
[2026-01-12 17:46:28] 2026-01-12 16:45:41,403 | INFO     | current memory leak: -23.17 B/s (using 173 data points, chi2=0.16)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | ..............................
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . Timing measurements:
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . get job = 0 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . initial setup = 11 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . payload setup = 157 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . stage-in = 0 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,404 | INFO     | . payload execution = 12879 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,405 | INFO     | . stage-out = 3 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,405 | INFO     | . log creation = 1 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,405 | INFO     | ..............................
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | 
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | job summary report
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | --------------------------------------------------
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | PanDA job id: 6966979409
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | task id: 48188456
[2026-01-12 17:46:28] 2026-01-12 16:45:41,520 | INFO     | errors: (none)
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | pilot state: finished 
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | transexitcode: 0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | exeerrorcode: 0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | exeerrordiag: 
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | exitcode: 0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | exitmsg: OK
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | cpuconsumptiontime: 47090 s
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | nevents: 400
[2026-01-12 17:46:28] 2026-01-12 16:45:41,521 | INFO     | neventsw: 0
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | pid: 11927
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | pgrp: 11927
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | corecount: 8
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | event service: False
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | sizes: {0: 2283285, 1: 2283970, 2: 2284169, 13: 2284169, 23: 2284225, 34: 2284253, 45: 2284409, 56: 2284437, 66: 2284465, 77: 2284493, 88: 2284549, 98: 2284857, 10
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | --------------------------------------------------
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | 
[2026-01-12 17:46:28] 2026-01-12 16:45:41,522 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-12 17:46:28] 2026-01-12 16:45:41,917 | INFO     | time since job start (13367s) is within the limit (349056.0s)
[2026-01-12 17:46:28] 2026-01-12 16:45:42,126 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,129 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 17:46:28] 2026-01-12 16:45:42,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,129 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 17:46:28] 2026-01-12 16:45:42,129 | INFO     | job 6966979409 has completed (purged errors)
[2026-01-12 17:46:28] 2026-01-12 16:45:42,129 | INFO     | overall cleanup function is called
[2026-01-12 17:46:28] 2026-01-12 16:45:43,146 | INFO     | --- collectZombieJob: --- 10, [11927]
[2026-01-12 17:46:28] 2026-01-12 16:45:43,146 | INFO     | zombie collector waiting for pid 11927
[2026-01-12 17:46:28] 2026-01-12 16:45:43,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 17:46:28] 2026-01-12 16:45:43,147 | INFO     | collected zombie processes
[2026-01-12 17:46:28] 2026-01-12 16:45:43,147 | INFO     | will attempt to kill all subprocesses of pid=11927
[2026-01-12 17:46:28] 2026-01-12 16:45:43,222 | INFO     | process IDs to be killed: [11927] (in reverse order)
[2026-01-12 17:46:28] 2026-01-12 16:45:43,875 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 17:46:28] 2026-01-12 16:45:43,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 17:46:28] 2026-01-12 16:45:43,877 | INFO     | did not find any defunct processes belonging to 11927
[2026-01-12 17:46:28] 2026-01-12 16:45:43,878 | INFO     | did not find any defunct processes belonging to 11927
[2026-01-12 17:46:28] 2026-01-12 16:45:43,879 | INFO     | ready for new job
[2026-01-12 17:46:28] 2026-01-12 16:45:43,879 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 17:46:28] 2026-01-12 16:45:43,882 | INFO     | ***************************************
[2026-01-12 17:46:28] 2026-01-12 16:45:43,882 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 17:46:28] 2026-01-12 16:45:43,882 | INFO     | ***************************************
[2026-01-12 17:46:28] 2026-01-12 16:45:43,882 | INFO     | 
[2026-01-12 17:46:28] 2026-01-12 16:45:43,883 | INFO     | pilot is running in a VM
[2026-01-12 17:46:28] 2026-01-12 16:45:43,883 | INFO     | architecture information:
[2026-01-12 17:46:28] 2026-01-12 16:45:43,883 | INFO     | executing command: cat /etc/os-release
[2026-01-12 17:46:28] 2026-01-12 16:45:44,101 | INFO     | cat /etc/os-release:
[2026-01-12 17:46:28] NAME="CentOS Linux"
[2026-01-12 17:46:28] VERSION="7 (Core)"
[2026-01-12 17:46:28] ID="centos"
[2026-01-12 17:46:28] ID_LIKE="rhel fedora"
[2026-01-12 17:46:28] VERSION_ID="7"
[2026-01-12 17:46:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 17:46:28] ANSI_COLOR="0;31"
[2026-01-12 17:46:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 17:46:28] HOME_URL="https://www.centos.org/"
[2026-01-12 17:46:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 17:46:28] 
[2026-01-12 17:46:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 17:46:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 17:46:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 17:46:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 17:46:28] 
[2026-01-12 17:46:28] 2026-01-12 16:45:44,102 | INFO     | ***************************************
[2026-01-12 17:46:28] 2026-01-12 16:45:44,605 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-12 17:46:28] 2026-01-12 16:45:44,775 | INFO     | sufficient remaining disk space (497360568320 B)
[2026-01-12 17:46:28] 2026-01-12 16:45:44,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 17:46:28] 2026-01-12 16:45:44,775 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 17:46:28] 2026-01-12 16:45:44,775 | INFO     | update_server=False
[2026-01-12 17:46:28] 2026-01-12 16:45:44,775 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 17:46:28] 2026-01-12 16:45:44,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 17:46:28] 2026-01-12 16:45:44,776 | INFO     | aborting loop
[2026-01-12 17:46:28] 2026-01-12 16:45:44,851 | INFO     | all payload control threads have been joined
[2026-01-12 17:46:28] 2026-01-12 16:45:45,318 | INFO     | all data control threads have been joined
[2026-01-12 17:46:28] 2026-01-12 16:45:45,456 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 17:46:28] 2026-01-12 16:45:45,781 | INFO     | [job] retrieve thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:45,782 | INFO     | [job] job monitor thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:45,856 | INFO     | [payload] control thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:45,868 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:45,880 | INFO     | all job control threads have been joined
[2026-01-12 17:46:28] 2026-01-12 16:45:45,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 17:46:28] 2026-01-12 16:45:46,113 | INFO     | [data] copytool_in thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,324 | INFO     | [data] control thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,355 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,505 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 17:46:28] 2026-01-12 16:45:46,560 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,886 | INFO     | [job] control thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:46,949 | INFO     | [payload] validate_post thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:47,064 | INFO     | [payload] failed_post thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:47,151 | INFO     | [job] validate thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:47,463 | INFO     | [data] copytool_out thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:47,541 | INFO     | [job] queue monitor thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:45:49,954 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 17:46:28] 2026-01-12 16:46:15,037 | INFO     | PID=5474 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 17:46:28] 2026-01-12 16:46:15,037 | INFO     | .. there are 2 such processes running
[2026-01-12 17:46:28] 2026-01-12 16:46:15,038 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 17:46:28] 2026-01-12 16:46:15,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 17:46:28] 2026-01-12 16:46:15,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 17:46:28] 2026-01-12 16:46:16,951 | INFO     | [monitor] cgroup control has ended
[2026-01-12 17:46:28] 2026-01-12 16:46:18,174 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223619073856)>', '<ExcThread(monitor, started 140222922729216)>']
[2026-01-12 17:46:28] 2026-01-12 16:46:19,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 17:46:28] 2026-01-12 16:46:19,062 | INFO     | [monitor] control thread has ended
[2026-01-12 17:46:28] 2026-01-12 16:46:23,200 | INFO     | all workflow threads have been joined
[2026-01-12 17:46:28] 2026-01-12 16:46:23,200 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 17:46:28] 2026-01-12 16:46:23,201 | INFO     | traces error code: 0
[2026-01-12 17:46:28] 2026-01-12 16:46:23,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 17:46:28] 2026-01-12 16:46:23,578 [wrapper] ==== pilot stdout END ====
[2026-01-12 17:46:28] 2026-01-12 16:46:23,603 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 17:46:28] 2026-01-12 16:46:23,677 [wrapper] pilotpid: 5474
[2026-01-12 17:46:28] 2026-01-12 16:46:23,771 [wrapper] Pilot exit status: 0
[2026-01-12 17:46:28] 2026-01-12 16:46:24,040 [wrapper] pandaids: 6966979409
[2026-01-12 17:46:28] 2026-01-12 16:46:24,937 [wrapper] cleanup supervisor_pilot  1001 5475
[2026-01-12 17:46:28] 2026-01-12 16:46:25,043 [wrapper] Test setup, not cleaning
[2026-01-12 17:46:28] 2026-01-12 16:46:25,124 [wrapper] apfmon messages muted
[2026-01-12 17:46:28] 2026-01-12 16:46:25,204 [wrapper] ==== wrapper stdout END ====
[2026-01-12 17:46:28] 2026-01-12 16:46:25,304 [wrapper] ==== wrapper stderr END ====
[2026-01-12 17:46:28]  *** Error codes and diagnostics ***
[2026-01-12 17:46:28]     "exeErrorCode": 0,
[2026-01-12 17:46:28]     "exeErrorDiag": "",
[2026-01-12 17:46:28]     "pilotErrorCode": 0,
[2026-01-12 17:46:28]     "pilotErrorDiag": "",
[2026-01-12 17:46:28]  *** Listing of results directory ***
[2026-01-12 17:46:28] total 479860
[2026-01-12 17:46:28] -rwx------. 1 boinc boinc     36322 Jan 12 13:52 runpilot2-wrapper.sh
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc    579449 Jan 12 13:52 pilot3.tar.gz
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc      5112 Jan 12 13:52 queuedata.json
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc       100 Jan 12 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 17:46:28] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 13:57 run_atlas
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc       105 Jan 12 13:57 job.xml
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc      6391 Jan 12 13:57 init_data.xml
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc 286811103 Jan 12 13:57 EVNT.48188454._000007.pool.root.1
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:57 start_atlas.sh
[2026-01-12 17:46:28] drwxrwx--x. 2 boinc boinc        68 Jan 12 13:57 shared
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc    592399 Jan 12 13:57 input.tar.gz
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc         0 Jan 12 13:57 boinc_lockfile
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc      2621 Jan 12 13:58 pandaJob.out
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc    987696 Jan 12 14:02 agis_schedconf.cvmfs.json
[2026-01-12 17:46:28] drwx------. 5 boinc boinc      4096 Jan 12 14:02 pilot3
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc 196133090 Jan 12 17:42 HITS.48188456._000170.pool.root.1
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc       531 Jan 12 17:42 boinc_task_state.xml
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc      1016 Jan 12 17:43 memory_monitor_summary.json
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc   1516240 Jan 12 17:43 agis_ddmendpoints.agis.ALL.json
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc    476937 Jan 12 17:43 log.48188456._000170.job.log.tgz.1
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc      7783 Jan 12 17:45 heartbeat.json
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc        95 Jan 12 17:46 pilot_heartbeat.json
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc      4883 Jan 12 17:46 pilotlog.txt
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc   1789332 Jan 12 17:46 log.48188456._000170.job.log.1
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc        28 Jan 12 17:46 wrapper_checkpoint.txt
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc       357 Jan 12 17:46 output.list
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc      8192 Jan 12 17:46 boinc_mmap_file
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc       620 Jan 12 17:46 runtime_log
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc   2283520 Jan 12 17:46 result.tar.gz
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc      8817 Jan 12 17:46 runtime_log.err
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc       657 Jan 12 17:46 hwyKDm5ZWz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfvhKDmGUgJJo.diag
[2026-01-12 17:46:28] -rw-r--r--. 1 boinc boinc     20760 Jan 12 17:46 stderr.txt
[2026-01-12 17:46:28] HITS file was successfully produced:
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc 196133090 Jan 12 17:42 shared/HITS.pool.root.1
[2026-01-12 17:46:28]  *** Contents of shared directory: ***
[2026-01-12 17:46:28] total 474460
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc 286811103 Jan 12 13:57 ATLAS.root_0
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc     15847 Jan 12 13:57 start_atlas.sh
[2026-01-12 17:46:28] -rw-r--r--. 2 boinc boinc    592399 Jan 12 13:57 input.tar.gz
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc 196133090 Jan 12 17:42 HITS.pool.root.1
[2026-01-12 17:46:28] -rw-------. 1 boinc boinc   2283520 Jan 12 17:46 result.tar.gz
17:46:30 (1406): run_atlas exited; CPU time 47221.882566
17:46:30 (1406): called boinc_finish(0)

</stderr_txt>
]]>

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