Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:52:51 (545989): wrapper (7.7.26015): starting
13:52:51 (545989): wrapper: running run_atlas (--nthreads 2)
[2026-01-12 13:52:51] Arguments: --nthreads 2
[2026-01-12 13:52:51] Threads: 2
[2026-01-12 13:52:51] Checking for CVMFS
[2026-01-12 13:52:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 13:52:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 13:52:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 13:52:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 13:52:52] 2.9.2.0 546184 0 30048 155053 4 1 21870271 36864001 0 130560 0 0 0.000 1335 27244 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-12 13:52:52] CVMFS is ok
[2026-01-12 13:52:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 13:52:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 13:52:52] Further information can be found at the LHC@home message board.
[2026-01-12 13:52:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 13:52:52] Checking for apptainer binary...
[2026-01-12 13:52:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 13:52:52] Running /usr/bin/apptainer --version
[2026-01-12 13:52:52] apptainer version 1.4.1-1.1
[2026-01-12 13:52:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 13:52:52] thA389
[2026-01-12 13:52:52] apptainer works
[2026-01-12 13:52:52] Set ATHENA_PROC_NUMBER=2
[2026-01-12 13:52:52] Set ATHENA_CORE_NUMBER=2
[2026-01-12 13:52:52] Starting ATLAS job with PandaID=6966979416
[2026-01-12 13:52:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 15:46:22]  *** The last 200 lines of the pilot log: ***
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 15:46:22] 2026-01-12 14:45:29,152 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,153 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 15:46:22] 2026-01-12 14:45:29,153 | INFO     | job 6966979416 has completed (purged errors)
[2026-01-12 15:46:22] 2026-01-12 14:45:29,153 | INFO     | overall cleanup function is called
[2026-01-12 15:46:22] 2026-01-12 14:45:30,159 | INFO     | --- collectZombieJob: --- 10, [556672]
[2026-01-12 15:46:22] 2026-01-12 14:45:30,159 | INFO     | zombie collector waiting for pid 556672
[2026-01-12 15:46:22] 2026-01-12 14:45:30,161 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 15:46:22] 2026-01-12 14:45:30,161 | INFO     | collected zombie processes
[2026-01-12 15:46:22] 2026-01-12 14:45:30,161 | INFO     | will attempt to kill all subprocesses of pid=556672
[2026-01-12 15:46:22] 2026-01-12 14:45:30,193 | INFO     | process IDs to be killed: [556672] (in reverse order)
[2026-01-12 15:46:22] 2026-01-12 14:45:30,213 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 15:46:22] 2026-01-12 14:45:30,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 15:46:22] 2026-01-12 14:45:30,214 | INFO     | did not find any defunct processes belonging to 556672
[2026-01-12 15:46:22] 2026-01-12 14:45:30,214 | INFO     | did not find any defunct processes belonging to 556672
[2026-01-12 15:46:22] 2026-01-12 14:45:30,214 | INFO     | ready for new job
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | ***************************************
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | ***************************************
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | 
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | architecture information:
[2026-01-12 15:46:22] 2026-01-12 14:45:30,215 | INFO     | executing command: cat /etc/os-release
[2026-01-12 15:46:22] 2026-01-12 14:45:30,223 | INFO     | cat /etc/os-release:
[2026-01-12 15:46:22] NAME="CentOS Linux"
[2026-01-12 15:46:22] VERSION="7 (Core)"
[2026-01-12 15:46:22] ID="centos"
[2026-01-12 15:46:22] ID_LIKE="rhel fedora"
[2026-01-12 15:46:22] VERSION_ID="7"
[2026-01-12 15:46:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 15:46:22] ANSI_COLOR="0;31"
[2026-01-12 15:46:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 15:46:22] HOME_URL="https://www.centos.org/"
[2026-01-12 15:46:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 15:46:22] 
[2026-01-12 15:46:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 15:46:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 15:46:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 15:46:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 15:46:22] 
[2026-01-12 15:46:22] 2026-01-12 14:45:30,224 | INFO     | ***************************************
[2026-01-12 15:46:22] 2026-01-12 14:45:30,727 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | INFO     | sufficient remaining disk space (840707342336 B)
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | INFO     | update_server=False
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | INFO     | aborting loop
[2026-01-12 15:46:22] 2026-01-12 14:45:30,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 15:46:22] 2026-01-12 14:45:30,930 | INFO     | all data control threads have been joined
[2026-01-12 15:46:22] 2026-01-12 14:45:31,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 15:46:22] 2026-01-12 14:45:31,583 | INFO     | all job control threads have been joined
[2026-01-12 15:46:22] 2026-01-12 14:45:31,627 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 15:46:22] 2026-01-12 14:45:31,744 | INFO     | [job] queue monitor thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:31,744 | INFO     | [job] retrieve thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:31,745 | INFO     | [job] job monitor thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:31,783 | INFO     | all payload control threads have been joined
[2026-01-12 15:46:22] 2026-01-12 14:45:31,936 | INFO     | [data] control thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:31,980 | INFO     | [payload] failed_post thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:32,080 | INFO     | [data] copytool_in thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:32,518 | INFO     | [payload] validate_post thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:32,589 | INFO     | [job] control thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:32,789 | INFO     | [payload] control thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:33,126 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:33,162 | INFO     | [data] copytool_out thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:33,166 | INFO     | [job] validate thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:33,203 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:33,232 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:35,634 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:45:40,813 | INFO     | job.realtimelogging is not enabled
[2026-01-12 15:46:22] 2026-01-12 14:45:41,820 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 15:46:22] 2026-01-12 14:46:01,164 | INFO     | PID=550244 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 15:46:22] 2026-01-12 14:46:01,164 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 15:46:22] 2026-01-12 14:46:01,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 15:46:22] 2026-01-12 14:46:01,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 15:46:22] 2026-01-12 14:46:15,858 | INFO     | [monitor] cgroup control has ended
[2026-01-12 15:46:22] 2026-01-12 14:46:17,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139968126314304)>', '<ExcThread(monitor, started 139967766435584)>']
[2026-01-12 15:46:22] 2026-01-12 14:46:17,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 15:46:22] 2026-01-12 14:46:17,250 | INFO     | [monitor] control thread has ended
[2026-01-12 15:46:22] 2026-01-12 14:46:22,232 | INFO     | all workflow threads have been joined
[2026-01-12 15:46:22] 2026-01-12 14:46:22,232 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 15:46:22] 2026-01-12 14:46:22,233 | INFO     | traces error code: 0
[2026-01-12 15:46:22] 2026-01-12 14:46:22,233 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 15:46:22] 2026-01-12 14:46:22,274 [wrapper] ==== pilot stdout END ====
[2026-01-12 15:46:22] 2026-01-12 14:46:22,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 15:46:22] 2026-01-12 14:46:22,277 [wrapper] pilotpid: 550244
[2026-01-12 15:46:22] 2026-01-12 14:46:22,279 [wrapper] Pilot exit status: 0
[2026-01-12 15:46:22] 2026-01-12 14:46:22,284 [wrapper] pandaids: 6966979416
[2026-01-12 15:46:22] 2026-01-12 14:46:22,295 [wrapper] cleanup supervisor_pilot  571545 550245
[2026-01-12 15:46:22] 2026-01-12 14:46:22,296 [wrapper] Test setup, not cleaning
[2026-01-12 15:46:22] 2026-01-12 14:46:22,298 [wrapper] apfmon messages muted
[2026-01-12 15:46:22] 2026-01-12 14:46:22,299 [wrapper] ==== wrapper stdout END ====
[2026-01-12 15:46:22] 2026-01-12 14:46:22,301 [wrapper] ==== wrapper stderr END ====
[2026-01-12 15:46:22]  *** Error codes and diagnostics ***
[2026-01-12 15:46:22]     "exeErrorCode": 0,
[2026-01-12 15:46:22]     "exeErrorDiag": "",
[2026-01-12 15:46:22]     "pilotErrorCode": 0,
[2026-01-12 15:46:22]     "pilotErrorDiag": "",
[2026-01-12 15:46:22]  *** Listing of results directory ***
[2026-01-12 15:46:22] total 478080
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc    579449 Jan 12 13:21 pilot3.tar.gz
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc      5112 Jan 12 13:47 queuedata.json
[2026-01-12 15:46:22] -rwx------ 1 boinc boinc     36322 Jan 12 13:48 runpilot2-wrapper.sh
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc       100 Jan 12 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 15:46:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 13:52 run_atlas
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc       105 Jan 12 13:52 job.xml
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc 286406398 Jan 12 13:52 EVNT.48188454._000008.pool.root.1
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc    592402 Jan 12 13:52 input.tar.gz
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc     15847 Jan 12 13:52 start_atlas.sh
[2026-01-12 15:46:22] drwxrwx--x 2 boinc boinc      4096 Jan 12 13:52 shared
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc         0 Jan 12 13:52 boinc_setup_complete
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc      6281 Jan 12 13:52 init_data.xml
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc         0 Jan 12 13:52 boinc_lockfile
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc      2620 Jan 12 13:52 pandaJob.out
[2026-01-12 15:46:22] -rw------- 1 boinc boinc    987696 Jan 12 13:53 agis_schedconf.cvmfs.json
[2026-01-12 15:46:22] -rw------- 1 boinc boinc   1516240 Jan 12 13:53 agis_ddmendpoints.agis.ALL.json
[2026-01-12 15:46:22] drwx------ 5 boinc boinc      4096 Jan 12 13:53 pilot3
[2026-01-12 15:46:22] -rw------- 1 boinc boinc 196726579 Jan 12 15:45 HITS.48188456._000177.pool.root.1
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc       529 Jan 12 15:45 boinc_task_state.xml
[2026-01-12 15:46:22] -rw------- 1 boinc boinc      1015 Jan 12 15:45 memory_monitor_summary.json
[2026-01-12 15:46:22] -rw------- 1 boinc boinc    283090 Jan 12 15:45 log.48188456._000177.job.log.tgz.1
[2026-01-12 15:46:22] -rw------- 1 boinc boinc      7736 Jan 12 15:45 heartbeat.json
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc      8192 Jan 12 15:45 boinc_mmap_file
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc        27 Jan 12 15:45 wrapper_checkpoint.txt
[2026-01-12 15:46:22] -rw------- 1 boinc boinc        95 Jan 12 15:46 pilot_heartbeat.json
[2026-01-12 15:46:22] -rw------- 1 boinc boinc      4823 Jan 12 15:46 pilotlog.txt
[2026-01-12 15:46:22] -rw------- 1 boinc boinc    973854 Jan 12 15:46 log.48188456._000177.job.log.1
[2026-01-12 15:46:22] -rw------- 1 boinc boinc       357 Jan 12 15:46 output.list
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc       620 Jan 12 15:46 runtime_log
[2026-01-12 15:46:22] -rw------- 1 boinc boinc   1280000 Jan 12 15:46 result.tar.gz
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc      8897 Jan 12 15:46 runtime_log.err
[2026-01-12 15:46:22] -rw------- 1 boinc boinc       658 Jan 12 15:46 hhrMDmzWWz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEvhKDm98RlXo.diag
[2026-01-12 15:46:22] -rw-r--r-- 1 boinc boinc     11900 Jan 12 15:46 stderr.txt
[2026-01-12 15:46:22] HITS file was successfully produced:
[2026-01-12 15:46:22] -rw------- 1 boinc boinc 196726579 Jan 12 15:45 shared/HITS.pool.root.1
[2026-01-12 15:46:22]  *** Contents of shared directory: ***
[2026-01-12 15:46:22] total 473668
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc 286406398 Jan 12 13:52 ATLAS.root_0
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc    592402 Jan 12 13:52 input.tar.gz
[2026-01-12 15:46:22] -rw-r--r-- 2 boinc boinc     15847 Jan 12 13:52 start_atlas.sh
[2026-01-12 15:46:22] -rw------- 1 boinc boinc 196726579 Jan 12 15:45 HITS.pool.root.1
[2026-01-12 15:46:22] -rw------- 1 boinc boinc   1280000 Jan 12 15:46 result.tar.gz
15:46:23 (545989): run_atlas exited; CPU time 13075.827533
15:46:23 (545989): called boinc_finish(0)

</stderr_txt>
]]>

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