Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:41:59 (2388): wrapper (7.7.26015): starting
17:41:59 (2388): wrapper: running run_atlas (--nthreads 8)
[2026-01-12 17:41:59] Arguments: --nthreads 8
[2026-01-12 17:41:59] Threads: 8
[2026-01-12 17:41:59] Checking for CVMFS
[2026-01-12 17:42:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 17:42:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 17:42:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 17:42:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 17:42:03] 2.11.2.0 15502 39971 125924 155059 0 60 13431583 25165825 96 130560 0 17563631 99.866 9966680 3511 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-12 17:42:03] CVMFS is ok
[2026-01-12 17:42:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 17:42:03] Checking for apptainer binary...
[2026-01-12 17:42:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 17:42:03] Running /usr/bin/apptainer --version
[2026-01-12 17:42:03] apptainer version 1.3.2-1.el7
[2026-01-12 17:42:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 17:42:10] cg-vwn488.simple-grid.lan
[2026-01-12 17:42:10] apptainer works
[2026-01-12 17:42:10] Set ATHENA_PROC_NUMBER=8
[2026-01-12 17:42:10] Set ATHENA_CORE_NUMBER=8
[2026-01-12 17:42:10] Starting ATLAS job with PandaID=6966979465
[2026-01-12 17:42:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 21:33:16]  *** The last 200 lines of the pilot log: ***
[2026-01-12 21:33:16] 2026-01-12 20:32:02,764 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 21:33:16] 2026-01-12 20:32:02,765 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-12 21:33:16] 2026-01-12 20:32:02,767 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6966979465/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,768 | INFO     | extracted standard info from prmon json
[2026-01-12 21:33:16] 2026-01-12 20:32:02,768 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 21:33:16] 2026-01-12 20:32:02,768 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 21:33:16] 2026-01-12 20:32:02,768 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 21:33:16] 2026-01-12 20:32:02,769 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 21:33:16] 2026-01-12 20:32:02,773 | INFO     | fitting pss+swap vs Time
[2026-01-12 21:33:16] 2026-01-12 20:32:02,774 | INFO     | sum of square deviations: 2912836010.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,776 | INFO     | sum of deviations: 113286668683.00002
[2026-01-12 21:33:16] 2026-01-12 20:32:02,776 | INFO     | mean x: 1768243341.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,776 | INFO     | mean y: 2424910.8720379146
[2026-01-12 21:33:16] 2026-01-12 20:32:02,776 | INFO     | intersect: -68768490044.5456
[2026-01-12 21:33:16] 2026-01-12 20:32:02,776 | INFO     | chi2: 7.225698440208231
[2026-01-12 21:33:16] 2026-01-12 20:32:02,777 | INFO     | sum of square deviations: 2710627567.5
[2026-01-12 21:33:16] 2026-01-12 20:32:02,781 | INFO     | sum of deviations: 124345477541.50002
[2026-01-12 21:33:16] 2026-01-12 20:32:02,782 | INFO     | mean x: 1768243188.5
[2026-01-12 21:33:16] 2026-01-12 20:32:02,782 | INFO     | mean y: 2433046.1893203883
[2026-01-12 21:33:16] 2026-01-12 20:32:02,782 | INFO     | intersect: -81112747187.26677
[2026-01-12 21:33:16] 2026-01-12 20:32:02,782 | INFO     | chi2: 6.506640608405634
[2026-01-12 21:33:16] 2026-01-12 20:32:02,782 | INFO     | current chi2=6.506640608405634 (change=9.951395532939996 %)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,783 | INFO     | right removable region: 205
[2026-01-12 21:33:16] 2026-01-12 20:32:02,783 | INFO     | sum of square deviations: 2710627567.5
[2026-01-12 21:33:16] 2026-01-12 20:32:02,784 | INFO     | sum of deviations: 41966215750.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,785 | INFO     | mean x: 1768243493.5
[2026-01-12 21:33:16] 2026-01-12 20:32:02,785 | INFO     | mean y: 2478648.669902913
[2026-01-12 21:33:16] 2026-01-12 20:32:02,785 | INFO     | intersect: -27373649609.036503
[2026-01-12 21:33:16] 2026-01-12 20:32:02,785 | INFO     | chi2: 2.5568544492611265
[2026-01-12 21:33:16] 2026-01-12 20:32:02,785 | INFO     | current chi2=2.5568544492611265 (change=64.61443180311518 %)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,786 | INFO     | sum of square deviations: 2518000700.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,790 | INFO     | sum of deviations: -790983766.9999981
[2026-01-12 21:33:16] 2026-01-12 20:32:02,791 | INFO     | mean x: 1768243646.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,791 | INFO     | mean y: 2512351.8258706466
[2026-01-12 21:33:16] 2026-01-12 20:32:02,791 | INFO     | intersect: 557973682.7488092
[2026-01-12 21:33:16] 2026-01-12 20:32:02,794 | INFO     | chi2: 0.8571874166805875
[2026-01-12 21:33:16] 2026-01-12 20:32:02,794 | INFO     | current chi2=0.8571874166805875 (change=66.4749232429599 %)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,795 | INFO     | sum of square deviations: 2334722845.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,796 | INFO     | sum of deviations: -8204876156.500001
[2026-01-12 21:33:16] 2026-01-12 20:32:02,796 | INFO     | mean x: 1768243798.5
[2026-01-12 21:33:16] 2026-01-12 20:32:02,797 | INFO     | mean y: 2518511.81122449
[2026-01-12 21:33:16] 2026-01-12 20:32:02,797 | INFO     | intersect: 6216627142.419002
[2026-01-12 21:33:16] 2026-01-12 20:32:02,797 | INFO     | chi2: 0.7960389376264408
[2026-01-12 21:33:16] 2026-01-12 20:32:02,797 | INFO     | current chi2=0.7960389376264408 (change=7.133618373790516 %)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,797 | INFO     | left removable region: 30
[2026-01-12 21:33:16] 2026-01-12 20:32:02,798 | INFO     | sum of square deviations: 1661798600.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,799 | INFO     | sum of deviations: 2148920261.0000005
[2026-01-12 21:33:16] 2026-01-12 20:32:02,799 | INFO     | mean x: 1768244073.0
[2026-01-12 21:33:16] 2026-01-12 20:32:02,799 | INFO     | mean y: 2532327.754285714
[2026-01-12 21:33:16] 2026-01-12 20:32:02,799 | INFO     | intersect: -2284035680.4645586
[2026-01-12 21:33:16] 2026-01-12 20:32:02,800 | INFO     | chi2: 0.00020869451645299803
[2026-01-12 21:33:16] 2026-01-12 20:32:02,800 | INFO     | current memory leak: 1.29 B/s (using 175 data points, chi2=0.00)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,800 | INFO     | could have reported an average CPU frequency of 2249 MHz (10 samples)
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | ..............................
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . Timing measurements:
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . get job = 0 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . initial setup = 11 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . payload setup = 144 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . stage-in = 0 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . payload execution = 13030 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . stage-out = 3 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | . log creation = 1 s
[2026-01-12 21:33:16] 2026-01-12 20:32:02,801 | INFO     | ..............................
[2026-01-12 21:33:16] 2026-01-12 20:32:02,970 | INFO     | time since job start (13519s) is within the limit (349056.0s)
[2026-01-12 21:33:16] 2026-01-12 20:32:03,086 | INFO     | 
[2026-01-12 21:33:16] 2026-01-12 20:32:03,086 | INFO     | job summary report
[2026-01-12 21:33:16] 2026-01-12 20:32:03,086 | INFO     | --------------------------------------------------
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | PanDA job id: 6966979465
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | task id: 48188456
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | errors: (none)
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | pilot state: finished 
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | transexitcode: 0
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | exeerrorcode: 0
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | exeerrordiag: 
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | exitcode: 0
[2026-01-12 21:33:16] 2026-01-12 20:32:03,087 | INFO     | exitmsg: OK
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | cpuconsumptiontime: 47739 s
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | nevents: 400
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | neventsw: 0
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | pid: 12565
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | pgrp: 12565
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | corecount: 8
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | event service: False
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | sizes: {0: 2283278, 1: 2283963, 2: 2284162, 13: 2284162, 23: 2284218, 34: 2284246, 45: 2284402, 55: 2284430, 66: 2284458, 77: 2284486, 88: 2284542, 98: 2284850, 10
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | --------------------------------------------------
[2026-01-12 21:33:16] 2026-01-12 20:32:03,088 | INFO     | 
[2026-01-12 21:33:16] 2026-01-12 20:32:03,089 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-12 21:33:16] 2026-01-12 20:32:03,428 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 21:33:16] 2026-01-12 20:32:03,430 | INFO     | job 6966979465 has completed (purged errors)
[2026-01-12 21:33:16] 2026-01-12 20:32:03,431 | INFO     | overall cleanup function is called
[2026-01-12 21:33:16] 2026-01-12 20:32:04,439 | INFO     | --- collectZombieJob: --- 10, [12565]
[2026-01-12 21:33:16] 2026-01-12 20:32:04,439 | INFO     | zombie collector waiting for pid 12565
[2026-01-12 21:33:16] 2026-01-12 20:32:04,439 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 21:33:16] 2026-01-12 20:32:04,439 | INFO     | collected zombie processes
[2026-01-12 21:33:16] 2026-01-12 20:32:04,439 | INFO     | will attempt to kill all subprocesses of pid=12565
[2026-01-12 21:33:16] 2026-01-12 20:32:04,483 | INFO     | process IDs to be killed: [12565] (in reverse order)
[2026-01-12 21:33:16] 2026-01-12 20:32:05,289 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 21:33:16] 2026-01-12 20:32:05,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 21:33:16] 2026-01-12 20:32:05,290 | INFO     | did not find any defunct processes belonging to 12565
[2026-01-12 21:33:16] 2026-01-12 20:32:05,296 | INFO     | did not find any defunct processes belonging to 12565
[2026-01-12 21:33:16] 2026-01-12 20:32:05,297 | INFO     | ready for new job
[2026-01-12 21:33:16] 2026-01-12 20:32:05,297 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 21:33:16] 2026-01-12 20:32:05,298 | INFO     | ***************************************
[2026-01-12 21:33:16] 2026-01-12 20:32:05,298 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 21:33:16] 2026-01-12 20:32:05,298 | INFO     | ***************************************
[2026-01-12 21:33:16] 2026-01-12 20:32:05,298 | INFO     | 
[2026-01-12 21:33:16] 2026-01-12 20:32:05,299 | INFO     | pilot is running in a VM
[2026-01-12 21:33:16] 2026-01-12 20:32:05,299 | INFO     | architecture information:
[2026-01-12 21:33:16] 2026-01-12 20:32:05,309 | INFO     | executing command: cat /etc/os-release
[2026-01-12 21:33:16] 2026-01-12 20:32:05,579 | INFO     | cat /etc/os-release:
[2026-01-12 21:33:16] NAME="CentOS Linux"
[2026-01-12 21:33:16] VERSION="7 (Core)"
[2026-01-12 21:33:16] ID="centos"
[2026-01-12 21:33:16] ID_LIKE="rhel fedora"
[2026-01-12 21:33:16] VERSION_ID="7"
[2026-01-12 21:33:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 21:33:16] ANSI_COLOR="0;31"
[2026-01-12 21:33:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 21:33:16] HOME_URL="https://www.centos.org/"
[2026-01-12 21:33:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 21:33:16] 
[2026-01-12 21:33:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 21:33:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 21:33:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 21:33:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 21:33:16] 
[2026-01-12 21:33:16] 2026-01-12 20:32:05,579 | INFO     | ***************************************
[2026-01-12 21:33:16] 2026-01-12 20:32:06,082 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-12 21:33:16] 2026-01-12 20:32:06,346 | INFO     | sufficient remaining disk space (496291020800 B)
[2026-01-12 21:33:16] 2026-01-12 20:32:06,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 21:33:16] 2026-01-12 20:32:06,346 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 21:33:16] 2026-01-12 20:32:06,346 | INFO     | update_server=False
[2026-01-12 21:33:16] 2026-01-12 20:32:06,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 21:33:16] 2026-01-12 20:32:06,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:33:16] 2026-01-12 20:32:06,364 | INFO     | aborting loop
[2026-01-12 21:33:16] 2026-01-12 20:32:06,379 | INFO     | all payload control threads have been joined
[2026-01-12 21:33:16] 2026-01-12 20:32:06,443 | INFO     | all job control threads have been joined
[2026-01-12 21:33:16] 2026-01-12 20:32:07,242 | INFO     | all data control threads have been joined
[2026-01-12 21:33:16] 2026-01-12 20:32:07,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 21:33:16] 2026-01-12 20:32:07,352 | INFO     | [job] retrieve thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,370 | INFO     | [job] job monitor thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,385 | INFO     | [payload] control thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,449 | INFO     | [job] control thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,809 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,885 | INFO     | [data] copytool_in thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:07,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 21:33:16] 2026-01-12 20:32:08,021 | INFO     | [payload] validate_post thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,222 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,248 | INFO     | [data] control thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,345 | INFO     | [payload] failed_post thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,803 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,809 | INFO     | [job] validate thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,829 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:08,950 | INFO     | [job] queue monitor thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:09,290 | INFO     | [data] copytool_out thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:09,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 21:33:16] 2026-01-12 20:32:13,590 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 21:33:16] 2026-01-12 20:32:36,091 | INFO     | PID=6110 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-12 21:33:16] 2026-01-12 20:32:36,091 | INFO     | .. there are 2 such processes running
[2026-01-12 21:33:16] 2026-01-12 20:32:36,091 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 21:33:16] 2026-01-12 20:32:36,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 21:33:16] 2026-01-12 20:32:36,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 21:33:16] 2026-01-12 20:33:06,173 | INFO     | [monitor] cgroup control has ended
[2026-01-12 21:33:16] 2026-01-12 20:33:06,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032865593152)>', '<ExcThread(monitor, started 140032283232000)>']
[2026-01-12 21:33:16] 2026-01-12 20:33:07,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 21:33:16] 2026-01-12 20:33:07,276 | INFO     | [monitor] control thread has ended
[2026-01-12 21:33:16] 2026-01-12 20:33:11,312 | INFO     | all workflow threads have been joined
[2026-01-12 21:33:16] 2026-01-12 20:33:11,312 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 21:33:16] 2026-01-12 20:33:11,313 | INFO     | traces error code: 0
[2026-01-12 21:33:16] 2026-01-12 20:33:11,313 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 21:33:16] 2026-01-12 20:33:11,629 [wrapper] ==== pilot stdout END ====
[2026-01-12 21:33:16] 2026-01-12 20:33:11,697 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 21:33:16] 2026-01-12 20:33:11,811 [wrapper] pilotpid: 6110
[2026-01-12 21:33:16] 2026-01-12 20:33:11,921 [wrapper] Pilot exit status: 0
[2026-01-12 21:33:16] 2026-01-12 20:33:12,347 [wrapper] pandaids: 6966979465
[2026-01-12 21:33:16] 2026-01-12 20:33:12,903 [wrapper] cleanup supervisor_pilot  3744 6111
[2026-01-12 21:33:16] 2026-01-12 20:33:12,992 [wrapper] Test setup, not cleaning
[2026-01-12 21:33:16] 2026-01-12 20:33:13,125 [wrapper] apfmon messages muted
[2026-01-12 21:33:16] 2026-01-12 20:33:13,219 [wrapper] ==== wrapper stdout END ====
[2026-01-12 21:33:16] 2026-01-12 20:33:13,338 [wrapper] ==== wrapper stderr END ====
[2026-01-12 21:33:16]  *** Error codes and diagnostics ***
[2026-01-12 21:33:16]     "exeErrorCode": 0,
[2026-01-12 21:33:16]     "exeErrorDiag": "",
[2026-01-12 21:33:16]     "pilotErrorCode": 0,
[2026-01-12 21:33:16]     "pilotErrorDiag": "",
[2026-01-12 21:33:16]  *** Listing of results directory ***
[2026-01-12 21:33:16] total 482688
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc    579449 Jan 12 13:21 pilot3.tar.gz
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc      5112 Jan 12 13:47 queuedata.json
[2026-01-12 21:33:16] -rwx------. 1 boinc boinc     36322 Jan 12 13:49 runpilot2-wrapper.sh
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc       100 Jan 12 17:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 21:33:16] -rwxr-xr-x. 1 boinc boinc      7986 Jan 12 17:41 run_atlas
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc       105 Jan 12 17:41 job.xml
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc      6390 Jan 12 17:41 init_data.xml
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc 288214797 Jan 12 17:41 EVNT.48188454._000010.pool.root.1
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc     15847 Jan 12 17:41 start_atlas.sh
[2026-01-12 21:33:16] drwxrwx--x. 2 boinc boinc        68 Jan 12 17:41 shared
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc    592403 Jan 12 17:41 input.tar.gz
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc         0 Jan 12 17:41 boinc_lockfile
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc      2617 Jan 12 17:42 pandaJob.out
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc    988542 Jan 12 17:46 agis_schedconf.cvmfs.json
[2026-01-12 21:33:16] drwx------. 5 boinc boinc      4096 Jan 12 17:46 pilot3
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc 197629586 Jan 12 21:28 HITS.48188456._000226.pool.root.1
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc       531 Jan 12 21:28 boinc_task_state.xml
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc      1011 Jan 12 21:29 memory_monitor_summary.json
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc   1516240 Jan 12 21:30 agis_ddmendpoints.agis.ALL.json
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc    457095 Jan 12 21:30 log.48188456._000226.job.log.tgz.1
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc        95 Jan 12 21:31 pilot_heartbeat.json
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc      7765 Jan 12 21:32 heartbeat.json
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc      8192 Jan 12 21:33 boinc_mmap_file
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc        28 Jan 12 21:33 wrapper_checkpoint.txt
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc      4883 Jan 12 21:33 pilotlog.txt
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc   1810224 Jan 12 21:33 log.48188456._000226.job.log.1
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc       357 Jan 12 21:33 output.list
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc       620 Jan 12 21:33 runtime_log
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc   2283520 Jan 12 21:33 result.tar.gz
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc       657 Jan 12 21:33 STPNDmZXWz8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcvhKDmrkVIWn.diag
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc      8817 Jan 12 21:33 runtime_log.err
[2026-01-12 21:33:16] -rw-r--r--. 1 boinc boinc     20772 Jan 12 21:33 stderr.txt
[2026-01-12 21:33:16] HITS file was successfully produced:
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc 197629586 Jan 12 21:28 shared/HITS.pool.root.1
[2026-01-12 21:33:16]  *** Contents of shared directory: ***
[2026-01-12 21:33:16] total 477288
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc 288214797 Jan 12 17:41 ATLAS.root_0
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc     15847 Jan 12 17:41 start_atlas.sh
[2026-01-12 21:33:16] -rw-r--r--. 2 boinc boinc    592403 Jan 12 17:41 input.tar.gz
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc 197629586 Jan 12 21:28 HITS.pool.root.1
[2026-01-12 21:33:16] -rw-------. 1 boinc boinc   2283520 Jan 12 21:33 result.tar.gz
21:33:17 (2388): run_atlas exited; CPU time 47866.443442
21:33:17 (2388): called boinc_finish(0)

</stderr_txt>
]]>

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