Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:45:43 (226370): wrapper (7.7.26015): starting
07:45:43 (226370): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 07:45:43] Arguments: --nthreads 12
[2026-01-12 07:45:43] Threads: 12
[2026-01-12 07:45:43] Checking for CVMFS
[2026-01-12 07:45:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 07:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 07:45:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 07:45:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 07:45:46] 2.13.3.0 4282 18171 202132 155053 1 93 32592143 39288832 8359 16776704 0 8434291 99.807 11750046 38013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-12 07:45:46] CVMFS is ok
[2026-01-12 07:45:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-12 07:45:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-12 07:45:46] Further information can be found at the LHC@home message board.
[2026-01-12 07:45:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 07:45:46] Checking for apptainer binary...
[2026-01-12 07:45:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-12 07:45:46] Running /usr/bin/apptainer --version
[2026-01-12 07:45:46] apptainer version 1.4.5-2.el9
[2026-01-12 07:45:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 07:45:46] c-211-32.aglt2.org
[2026-01-12 07:45:46] apptainer works
[2026-01-12 07:45:46] Set ATHENA_PROC_NUMBER=12
[2026-01-12 07:45:46] Set ATHENA_CORE_NUMBER=12
[2026-01-12 07:45:47] Starting ATLAS job with PandaID=6963193767
[2026-01-12 07:45:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 19:55:17]  *** The last 200 lines of the pilot log: ***
[2026-01-12 19:55:17] 2026-01-13 00:54:34,501 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.991325
[2026-01-12 19:55:17] 2026-01-13 00:54:34,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963193767/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 19:55:17] 2026-01-13 00:54:34,573 | INFO     | extracted standard info from prmon json
[2026-01-12 19:55:17] 2026-01-13 00:54:34,573 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 19:55:17] 2026-01-13 00:54:34,574 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 19:55:17] 2026-01-13 00:54:34,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 19:55:17] 2026-01-13 00:54:34,574 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 19:55:17] 2026-01-13 00:54:34,830 | INFO     | fitting pss+swap vs Time
[2026-01-12 19:55:17] 2026-01-13 00:54:34,831 | INFO     | sum of square deviations: 112392150911.02104
[2026-01-12 19:55:17] 2026-01-13 00:54:34,925 | INFO     | sum of deviations: 16107766569.110893
[2026-01-12 19:55:17] 2026-01-13 00:54:34,926 | INFO     | mean x: 1768243833.2117813
[2026-01-12 19:55:17] 2026-01-13 00:54:34,926 | INFO     | mean y: 2701906.582047686
[2026-01-12 19:55:17] 2026-01-13 00:54:34,926 | INFO     | intersect: -250718449.48173392
[2026-01-12 19:55:17] 2026-01-13 00:54:34,958 | INFO     | chi2: 4.602125793365317
[2026-01-12 19:55:17] 2026-01-13 00:54:34,960 | INFO     | sum of square deviations: 110044321111.50238
[2026-01-12 19:55:17] 2026-01-13 00:54:35,082 | INFO     | sum of deviations: 167772632696.02814
[2026-01-12 19:55:17] 2026-01-13 00:54:35,082 | INFO     | mean x: 1768243680.717514
[2026-01-12 19:55:17] 2026-01-13 00:54:35,082 | INFO     | mean y: 2711730.425141243
[2026-01-12 19:55:17] 2026-01-13 00:54:35,083 | INFO     | intersect: -2693137492.557467
[2026-01-12 19:55:17] 2026-01-13 00:54:35,091 | INFO     | chi2: 2.341940043202223
[2026-01-12 19:55:17] 2026-01-13 00:54:35,091 | INFO     | current chi2=2.341940043202223 (change=49.111776853677156 %)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,092 | INFO     | sum of square deviations: 107729421553.93779
[2026-01-12 19:55:17] 2026-01-13 00:54:35,275 | INFO     | sum of deviations: 165905015407.8746
[2026-01-12 19:55:17] 2026-01-13 00:54:35,275 | INFO     | mean x: 1768243528.2233286
[2026-01-12 19:55:17] 2026-01-13 00:54:35,275 | INFO     | mean y: 2711607.4466571836
[2026-01-12 19:55:17] 2026-01-13 00:54:35,276 | INFO     | intersect: -2720411431.396419
[2026-01-12 19:55:17] 2026-01-13 00:54:35,277 | INFO     | chi2: 2.3421422386285005
[2026-01-12 19:55:17] 2026-01-13 00:54:35,277 | INFO     | current chi2=2.3421422386285005 (change=-0.008633672192613906 %)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,277 | INFO     | right removable region: 702
[2026-01-12 19:55:17] 2026-01-13 00:54:35,309 | INFO     | sum of square deviations: 110043880568.62697
[2026-01-12 19:55:17] 2026-01-13 00:54:35,461 | INFO     | sum of deviations: -147899181004.483
[2026-01-12 19:55:17] 2026-01-13 00:54:35,462 | INFO     | mean x: 1768243985.720339
[2026-01-12 19:55:17] 2026-01-13 00:54:35,462 | INFO     | mean y: 2712534.5127118644
[2026-01-12 19:55:17] 2026-01-13 00:54:35,462 | INFO     | intersect: 2379235753.730225
[2026-01-12 19:55:17] 2026-01-13 00:54:35,497 | INFO     | chi2: 2.5332243006377952
[2026-01-12 19:55:17] 2026-01-13 00:54:35,498 | INFO     | current chi2=2.5332243006377952 (change=44.95534423918108 %)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,499 | INFO     | sum of square deviations: 107728584021.58463
[2026-01-12 19:55:17] 2026-01-13 00:54:35,580 | INFO     | time since job start (43690s) is within the limit (349056.0s)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,633 | INFO     | sum of deviations: -164254543851.47662
[2026-01-12 19:55:17] 2026-01-13 00:54:35,634 | INFO     | mean x: 1768244138.227596
[2026-01-12 19:55:17] 2026-01-13 00:54:35,634 | INFO     | mean y: 2713610.096728307
[2026-01-12 19:55:17] 2026-01-13 00:54:35,634 | INFO     | intersect: 2698768115.78324
[2026-01-12 19:55:17] 2026-01-13 00:54:35,635 | INFO     | chi2: 2.5097150503000205
[2026-01-12 19:55:17] 2026-01-13 00:54:35,635 | INFO     | current chi2=2.5097150503000205 (change=0.9280366658355426 %)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,635 | INFO     | left removable region: 20
[2026-01-12 19:55:17] 2026-01-13 00:54:35,636 | INFO     | sum of square deviations: 98360051043.06306
[2026-01-12 19:55:17] 2026-01-13 00:54:35,726 | INFO     | sum of deviations: 23371822524.914948
[2026-01-12 19:55:17] 2026-01-13 00:54:35,726 | INFO     | mean x: 1768244107.7404692
[2026-01-12 19:55:17] 2026-01-13 00:54:35,726 | INFO     | mean y: 2720989.140762463
[2026-01-12 19:55:17] 2026-01-13 00:54:35,727 | INFO     | intersect: -417440316.4765293
[2026-01-12 19:55:17] 2026-01-13 00:54:35,728 | INFO     | chi2: 0.13195382122061136
[2026-01-12 19:55:17] 2026-01-13 00:54:35,781 | INFO     | current memory leak: 0.24 B/s (using 682 data points, chi2=0.13)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,782 | INFO     | could have reported an average CPU frequency of 2899 MHz (27 samples)
[2026-01-12 19:55:17] 2026-01-13 00:54:35,783 | INFO     | ..............................
[2026-01-12 19:55:17] 2026-01-13 00:54:35,783 | INFO     | . Timing measurements:
[2026-01-12 19:55:17] 2026-01-13 00:54:35,783 | INFO     | . get job = 0 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,783 | INFO     | . initial setup = 6 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,783 | INFO     | . payload setup = 36 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,800 | INFO     | . stage-in = 0 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,800 | INFO     | . payload execution = 43510 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,801 | INFO     | . stage-out = 7 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,801 | INFO     | . log creation = 1 s
[2026-01-12 19:55:17] 2026-01-13 00:54:35,801 | INFO     | ..............................
[2026-01-12 19:55:17] 2026-01-13 00:54:36,750 | INFO     | 
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | job summary report
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | --------------------------------------------------
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | PanDA job id: 6963193767
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | task id: 47898826
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | errors: (none)
[2026-01-12 19:55:17] 2026-01-13 00:54:36,751 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | pilot state: finished 
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | transexitcode: 0
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | exeerrorcode: 0
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | exeerrordiag: 
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | exitcode: 0
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | exitmsg: OK
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | cpuconsumptiontime: 115286 s
[2026-01-12 19:55:17] 2026-01-13 00:54:36,752 | INFO     | nevents: 400
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | neventsw: 0
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | pid: 237645
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | pgrp: 237645
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | corecount: 12
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | event service: False
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | sizes: {0: 2283143, 1: 2283744, 2: 2283828, 3: 2284055, 4: 2284055, 5: 2284083, 16: 2284267, 27: 2284295, 36: 2284585, 38: 2284613, 43552: 2328910, 43554: 2329189,
[2026-01-12 19:55:17] 2026-01-13 00:54:36,753 | INFO     | --------------------------------------------------
[2026-01-12 19:55:17] 2026-01-13 00:54:36,754 | INFO     | 
[2026-01-12 19:55:17] 2026-01-13 00:54:36,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-12 19:55:17] 2026-01-13 00:54:37,103 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,103 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,103 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,103 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,106 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 19:55:17] 2026-01-13 00:54:37,106 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,106 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 19:55:17] 2026-01-13 00:54:37,139 | INFO     | job 6963193767 has completed (purged errors)
[2026-01-12 19:55:17] 2026-01-13 00:54:37,140 | INFO     | overall cleanup function is called
[2026-01-12 19:55:17] 2026-01-13 00:54:38,235 | INFO     | --- collectZombieJob: --- 10, [237645]
[2026-01-12 19:55:17] 2026-01-13 00:54:38,236 | INFO     | zombie collector waiting for pid 237645
[2026-01-12 19:55:17] 2026-01-13 00:54:38,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 19:55:17] 2026-01-13 00:54:38,236 | INFO     | collected zombie processes
[2026-01-12 19:55:17] 2026-01-13 00:54:38,236 | INFO     | will attempt to kill all subprocesses of pid=237645
[2026-01-12 19:55:17] 2026-01-13 00:54:42,083 | INFO     | PID=230429 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 19:55:17] 2026-01-13 00:54:42,083 | INFO     | .. there are 7 such processes running
[2026-01-12 19:55:17] 2026-01-13 00:54:42,404 | INFO     | process IDs to be killed: [237645] (in reverse order)
[2026-01-12 19:55:17] 2026-01-13 00:54:43,346 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 19:55:17] 2026-01-13 00:54:43,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 19:55:17] 2026-01-13 00:54:43,481 | INFO     | did not find any defunct processes belonging to 237645
[2026-01-12 19:55:17] 2026-01-13 00:54:43,647 | INFO     | did not find any defunct processes belonging to 237645
[2026-01-12 19:55:17] 2026-01-13 00:54:43,647 | INFO     | ready for new job
[2026-01-12 19:55:17] 2026-01-13 00:54:43,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 19:55:17] 2026-01-13 00:54:43,686 | INFO     | ***************************************
[2026-01-12 19:55:17] 2026-01-13 00:54:43,686 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 19:55:17] 2026-01-13 00:54:43,687 | INFO     | ***************************************
[2026-01-12 19:55:17] 2026-01-13 00:54:43,687 | INFO     | 
[2026-01-12 19:55:17] 2026-01-13 00:54:43,772 | INFO     | architecture information:
[2026-01-12 19:55:17] 2026-01-13 00:54:43,817 | INFO     | executing command: cat /etc/os-release
[2026-01-12 19:55:17] 2026-01-13 00:54:44,015 | INFO     | cat /etc/os-release:
[2026-01-12 19:55:17] NAME="CentOS Linux"
[2026-01-12 19:55:17] VERSION="7 (Core)"
[2026-01-12 19:55:17] ID="centos"
[2026-01-12 19:55:17] ID_LIKE="rhel fedora"
[2026-01-12 19:55:17] VERSION_ID="7"
[2026-01-12 19:55:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 19:55:17] ANSI_COLOR="0;31"
[2026-01-12 19:55:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 19:55:17] HOME_URL="https://www.centos.org/"
[2026-01-12 19:55:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 19:55:17] 
[2026-01-12 19:55:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 19:55:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 19:55:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 19:55:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 19:55:17] 
[2026-01-12 19:55:17] 2026-01-13 00:54:44,016 | INFO     | ***************************************
[2026-01-12 19:55:17] 2026-01-13 00:54:44,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-12 19:55:17] 2026-01-13 00:54:44,691 | INFO     | sufficient remaining disk space (52640612352 B)
[2026-01-12 19:55:17] 2026-01-13 00:54:44,691 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 19:55:17] 2026-01-13 00:54:44,691 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 19:55:17] 2026-01-13 00:54:44,692 | INFO     | update_server=False
[2026-01-12 19:55:17] 2026-01-13 00:54:44,692 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 19:55:17] 2026-01-13 00:54:44,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 19:55:17] 2026-01-13 00:54:44,864 | INFO     | all job control threads have been joined
[2026-01-12 19:55:17] 2026-01-13 00:54:45,028 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 19:55:17] 2026-01-13 00:54:45,129 | INFO     | all payload control threads have been joined
[2026-01-12 19:55:17] 2026-01-13 00:54:45,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:55:17] 2026-01-13 00:54:45,652 | INFO     | aborting loop
[2026-01-12 19:55:17] 2026-01-13 00:54:45,660 | INFO     | all data control threads have been joined
[2026-01-12 19:55:17] 2026-01-13 00:54:45,698 | INFO     | [job] retrieve thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:45,768 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:45,870 | INFO     | [job] control thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:45,911 | INFO     | [job] validate thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,059 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 19:55:17] 2026-01-13 00:54:46,159 | INFO     | [payload] control thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,662 | INFO     | [job] job monitor thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,666 | INFO     | [data] control thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,706 | INFO     | [monitor] cgroup control has ended
[2026-01-12 19:55:17] 2026-01-13 00:54:46,713 | INFO     | [data] copytool_out thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,717 | INFO     | [payload] failed_post thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,871 | INFO     | [payload] validate_post thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,910 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,932 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:46,933 | INFO     | [data] copytool_in thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:47,060 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:47,064 | INFO     | [job] queue monitor thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:49,040 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 19:55:17] 2026-01-13 00:54:49,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140134797625152)>', '<ExcThread(monitor, started 140134525671168)>']
[2026-01-12 19:55:17] 2026-01-13 00:54:54,120 | INFO     | all workflow threads have been joined
[2026-01-12 19:55:17] 2026-01-13 00:54:54,120 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 19:55:17] 2026-01-13 00:54:54,121 | INFO     | traces error code: 0
[2026-01-12 19:55:17] 2026-01-13 00:54:54,121 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 19:55:17] 2026-01-13 00:55:15,780 | INFO     | PID=230429 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-12 19:55:17] 2026-01-13 00:55:15,781 | INFO     | .. there are 7 such processes running
[2026-01-12 19:55:17] 2026-01-13 00:55:15,782 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 19:55:17] 2026-01-13 00:55:15,782 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 19:55:17] 2026-01-13 00:55:15,782 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 19:55:17] 2026-01-13 00:55:15,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 19:55:17] 2026-01-13 00:55:15,782 | INFO     | [monitor] control thread has ended
[2026-01-12 19:55:17] 2026-01-13 00:55:16,160 [wrapper] ==== pilot stdout END ====
[2026-01-12 19:55:17] 2026-01-13 00:55:16,196 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 19:55:17] 2026-01-13 00:55:16,251 [wrapper] pilotpid: 230429
[2026-01-12 19:55:17] 2026-01-13 00:55:16,299 [wrapper] Pilot exit status: 0
[2026-01-12 19:55:17] 2026-01-13 00:55:16,486 [wrapper] pandaids: 6963193767
[2026-01-12 19:55:17] 2026-01-13 00:55:16,902 [wrapper] cleanup supervisor_pilot 1284312 230430
[2026-01-12 19:55:17] 2026-01-13 00:55:16,905 [wrapper] Test setup, not cleaning
[2026-01-12 19:55:17] 2026-01-13 00:55:16,908 [wrapper] apfmon messages muted
[2026-01-12 19:55:17] 2026-01-13 00:55:16,927 [wrapper] ==== wrapper stdout END ====
[2026-01-12 19:55:17] 2026-01-13 00:55:16,943 [wrapper] ==== wrapper stderr END ====
[2026-01-12 19:55:17]  *** Error codes and diagnostics ***
[2026-01-12 19:55:17]     "exeErrorCode": 0,
[2026-01-12 19:55:17]     "exeErrorDiag": "",
[2026-01-12 19:55:17]     "pilotErrorCode": 0,
[2026-01-12 19:55:17]     "pilotErrorDiag": "",
[2026-01-12 19:55:17]  *** Listing of results directory ***
[2026-01-12 19:55:17] total 453852
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-12 19:55:17] -rwx------. 1 boincer umatlas     36322 Jan  8 23:23 runpilot2-wrapper.sh
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:24 queuedata.json
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas       100 Jan 12 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 19:55:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 12 07:45 run_atlas
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas       105 Jan 12 07:45 job.xml
[2026-01-12 19:55:17] -rw-r--r--. 2 boincer umatlas 225483579 Jan 12 07:45 EVNT.47898824._001508.pool.root.1
[2026-01-12 19:55:17] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 07:45 start_atlas.sh
[2026-01-12 19:55:17] drwxrwx--x. 2 boincer umatlas      4096 Jan 12 07:45 shared
[2026-01-12 19:55:17] -rw-r--r--. 2 boincer umatlas    592398 Jan 12 07:45 input.tar.gz
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas         0 Jan 12 07:45 boinc_lockfile
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas      2520 Jan 12 07:45 pandaJob.out
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas        57 Jan 12 07:45 setup.sh.local
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas    987696 Jan 12 07:46 agis_schedconf.cvmfs.json
[2026-01-12 19:55:17] drwx------. 5 boincer umatlas      4096 Jan 12 07:46 pilot3
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas      6525 Jan 12 19:49 init_data.xml
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas 223291573 Jan 12 19:50 HITS.47898826._039240.pool.root.1
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas       532 Jan 12 19:50 boinc_task_state.xml
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas      1041 Jan 12 19:53 memory_monitor_summary.json
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas   1516240 Jan 12 19:53 agis_ddmendpoints.agis.ALL.json
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas    871692 Jan 12 19:53 log.47898826._039240.job.log.tgz.1
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas      7825 Jan 12 19:54 heartbeat.json
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas      8192 Jan 12 19:54 boinc_mmap_file
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas        29 Jan 12 19:54 wrapper_checkpoint.txt
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas        95 Jan 12 19:55 pilot_heartbeat.json
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas       821 Jan 12 19:55 pilotlog.txt
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas   5156666 Jan 12 19:55 log.47898826._039240.job.log.1
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas       357 Jan 12 19:55 output.list
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas       620 Jan 12 19:55 runtime_log
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas   6051840 Jan 12 19:55 result.tar.gz
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas      9345 Jan 12 19:55 runtime_log.err
[2026-01-12 19:55:17] -rw-------. 1 boincer umatlas       659 Jan 12 19:55 By4MDm4CJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlEmKDmbi1Bzn.diag
[2026-01-12 19:55:17] -rw-r--r--. 1 boincer umatlas     21071 Jan 12 19:55 stderr.txt
[2026-01-12 19:55:18] HITS file was successfully produced:
[2026-01-12 19:55:18] -rw-------. 1 boincer umatlas 223291573 Jan 12 19:50 shared/HITS.pool.root.1
[2026-01-12 19:55:18]  *** Contents of shared directory: ***
[2026-01-12 19:55:18] total 444772
[2026-01-12 19:55:18] -rw-r--r--. 2 boincer umatlas 225483579 Jan 12 07:45 ATLAS.root_0
[2026-01-12 19:55:18] -rw-r--r--. 2 boincer umatlas     15847 Jan 12 07:45 start_atlas.sh
[2026-01-12 19:55:18] -rw-r--r--. 2 boincer umatlas    592398 Jan 12 07:45 input.tar.gz
[2026-01-12 19:55:18] -rw-------. 1 boincer umatlas 223291573 Jan 12 19:50 HITS.pool.root.1
[2026-01-12 19:55:18] -rw-------. 1 boincer umatlas   6051840 Jan 12 19:55 result.tar.gz
19:55:40 (226370): run_atlas exited; CPU time 116593.436979
19:55:40 (226370): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN